BLASTX nr result

ID: Coptis25_contig00023910 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023910
         (1262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306907.1| predicted protein [Populus trichocarpa] gi|2...   115   2e-25
ref|XP_002313154.1| predicted protein [Populus trichocarpa] gi|2...   119   1e-24
ref|XP_003634377.1| PREDICTED: uncharacterized protein LOC100259...   119   2e-24
ref|XP_002298754.1| predicted protein [Populus trichocarpa] gi|2...   119   2e-24
dbj|BAF85832.1| alpha-1,2-fucosidase [Lilium longiflorum]             117   5e-24

>ref|XP_002306907.1| predicted protein [Populus trichocarpa] gi|222856356|gb|EEE93903.1|
           predicted protein [Populus trichocarpa]
          Length = 120

 Score =  115 bits (288), Expect(2) = 2e-25
 Identities = 59/90 (65%), Positives = 66/90 (73%)
 Frame = -2

Query: 595 KFFSSQFVKYGLVIVFNVMMWGCYVNSLKALSSLQATVTNFATNXXXXXXXXXXXFDEII 416
           KFFS Q +KYGLV++FNV MWGCYVNSLKALSSLQATVTNFA N           F E +
Sbjct: 27  KFFSYQVIKYGLVVLFNVTMWGCYVNSLKALSSLQATVTNFAANFLSSGLAGFFLFKETL 86

Query: 415 STKWFVGALLIVLGVFILSKSSVETKTHSD 326
           S +WF GALLIV+GV ILSKSS+E K   D
Sbjct: 87  SVQWFAGALLIVIGVVILSKSSIERKESID 116



 Score = 27.7 bits (60), Expect(2) = 2e-25
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 674 MDSSNKRGYAWVISAGCKRCISCHCCKVLLFSV 576
           MD + + GY W ISAG     +    K   + V
Sbjct: 1   MDGTKRTGYVWAISAGLNAAFAAIAAKFFSYQV 33


>ref|XP_002313154.1| predicted protein [Populus trichocarpa] gi|222849562|gb|EEE87109.1|
            predicted protein [Populus trichocarpa]
          Length = 803

 Score =  119 bits (299), Expect = 1e-24
 Identities = 68/148 (45%), Positives = 96/148 (64%), Gaps = 2/148 (1%)
 Frame = -1

Query: 1187 LNKGKYPEGTQSCFKLWDKPSNVSQPLGDHRLDFDDSHVAHDVKPYRIELDLDTATVKLI 1008
            ++ G+Y + T +  KL   PS+V Q LGD +L+FD+SH+ +  K Y  ELDLDTAT ++ 
Sbjct: 79   VDNGQYADATTAAEKLSHDPSDVYQLLGDIKLEFDNSHLKYVEKSYHRELDLDTATARVK 138

Query: 1007 YSVEDVVFTGGRYPSNPHEVR*L*QRFPEANRALLSFT-SIYRKLQHQSRVTAENQIILE 831
            YSV DV +T   + SNP++V  +  +   +    +SFT  +  K+ H S V  ENQII+E
Sbjct: 139  YSVGDVEYTREYFASNPNQV--IATKISGSKSGSVSFTVYLDSKMHHYSYVKGENQIIME 196

Query: 830  -LCPNKRVSPKGNLNDNPKGVQFTAILS 750
              CP KR+ PK N +DNPKG+QFTAIL+
Sbjct: 197  GSCPGKRIPPKLNADDNPKGIQFTAILN 224


>ref|XP_003634377.1| PREDICTED: uncharacterized protein LOC100259103 isoform 2 [Vitis
           vinifera] gi|359492197|ref|XP_002280550.2| PREDICTED:
           uncharacterized protein LOC100259103 isoform 1 [Vitis
           vinifera] gi|302142607|emb|CBI19810.3| unnamed protein
           product [Vitis vinifera]
          Length = 116

 Score =  119 bits (298), Expect = 2e-24
 Identities = 60/90 (66%), Positives = 68/90 (75%)
 Frame = -2

Query: 595 KFFSSQFVKYGLVIVFNVMMWGCYVNSLKALSSLQATVTNFATNXXXXXXXXXXXFDEII 416
           K FSSQ +KYGLVI+FNV MWGCYVNSLKALSSLQATVTNFA N           F+E +
Sbjct: 27  KLFSSQVIKYGLVIIFNVTMWGCYVNSLKALSSLQATVTNFAANFLSSGLAGFFLFEEAL 86

Query: 415 STKWFVGALLIVLGVFILSKSSVETKTHSD 326
             +WF GALLIV+GVFILSKSS+E K  +D
Sbjct: 87  PFQWFAGALLIVIGVFILSKSSIERKASTD 116


>ref|XP_002298754.1| predicted protein [Populus trichocarpa] gi|222846012|gb|EEE83559.1|
            predicted protein [Populus trichocarpa]
          Length = 808

 Score =  119 bits (297), Expect = 2e-24
 Identities = 67/147 (45%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
 Frame = -1

Query: 1187 LNKGKYPEGTQSCFKLWDKPSNVSQPLGDHRLDFDDSHVAHDVKPYRIELDLDTATVKLI 1008
            ++ G+Y E T +  KL    S+V Q LGD +L+FDDSH+ +D K Y+ ELDLDTAT ++ 
Sbjct: 78   VDNGQYAEATTAAEKLSGNQSDVYQLLGDIKLEFDDSHLKYDEKTYKRELDLDTATARVK 137

Query: 1007 YSVEDVVFTGGRYPSNPHEVR*L*QRFPEANRALLSFT-SIYRKLQHQSRVTAENQIILE 831
            YSV D+ +T   + SNP++V  +  +   +    +SFT S+  K+ H S V  ENQII+E
Sbjct: 138  YSVADIEYTREHFASNPNQV--IVTKISGSKPGSVSFTVSLDSKMSHHSYVKGENQIIIE 195

Query: 830  -LCPNKRVSPKGNLNDNPKGVQFTAIL 753
              CP  R + K N ND+P+G+QFTAIL
Sbjct: 196  GSCPGNRYAQKLNENDSPQGIQFTAIL 222


>dbj|BAF85832.1| alpha-1,2-fucosidase [Lilium longiflorum]
          Length = 854

 Score =  117 bits (294), Expect = 5e-24
 Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
 Frame = -1

Query: 1187 LNKGKYPEGTQSCFKLWDKPSNVSQPLGDHRLDFDDSHVAHDVKPYRIELDLDTATVKLI 1008
            ++ GKY E + + F L   PS+V QPLG   L+F DSHVA+    Y+ ELDL TAT K+ 
Sbjct: 99   VDDGKYAEASLAAFDLSGHPSDVYQPLGTMNLEFGDSHVAY--SNYQRELDLTTATAKVT 156

Query: 1007 YSVEDVVFTGGRYPSNPHEVR*L*QRFPEANRALLSF-TSIYRKLQHQSRVTAENQIILE 831
            YS+ DV FT   + SNPH+V  L  +        LSF  S+  KL HQS     N+II+E
Sbjct: 157  YSLGDVEFTREHFSSNPHQV--LVTKISANKSGSLSFIVSLDSKLHHQSSADGVNRIIME 214

Query: 830  -LCPNKRVSPKGNLNDNPKGVQFTAIL 753
              CP +R++PKGNL +N KG+QF+A+L
Sbjct: 215  GSCPGRRIAPKGNLFENNKGIQFSAVL 241


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