BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023883
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002883344.1| pentatricopeptide repeat-containing protein ...   173   1e-41
ref|NP_188854.1| pentatricopeptide repeat-containing protein [Ar...   173   1e-41
ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40
emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]   170   1e-40
ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|2...   165   4e-39

>ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329184|gb|EFH59603.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 824

 Score =  173 bits (439), Expect = 1e-41
 Identities = 85/151 (56%), Positives = 111/151 (73%), Gaps = 9/151 (5%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTA---NKSDSYTYS 264
           G P +AR+LFD +P+PT T+LWNTIIIGFICN +PH+AL FY+RM       K D+YTYS
Sbjct: 53  GNPQLARQLFDAIPKPT-TVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYS 111

Query: 263 SLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN--GTE----RFDLV 102
           S LKACA+T+ LK GK +HC ++R     + +V NSL+NMY SCLN  G+E     +D+V
Sbjct: 112 STLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVV 171

Query: 101 GNVFDRMSKRNVVAWNTIIAWYVKMGRYSKA 9
             VFD M ++NVVAWNT+I+WYVK GR ++A
Sbjct: 172 RKVFDNMRRKNVVAWNTLISWYVKTGRNAEA 202



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANK--SDSYTYSS 261
           G  + +RR+FD+     +  +WNT+I  ++ N    +++  +   + + +  SD  T+  
Sbjct: 269 GDLESSRRVFDSCVE-RNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLL 327

Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81
              A +  +Q++LG+  H  V ++  +L  ++ NSL+ MY+ C    + F     VF  M
Sbjct: 328 AASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSF----GVFHSM 383

Query: 80  SKRNVVAWNTIIAWYVKMGRYSKALM 3
            +R+VV+WNT+I+ +V+ G   + LM
Sbjct: 384 RERDVVSWNTMISAFVQNGLDDEGLM 409



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
 Frame = -1

Query: 371 WNTIIIGFICNGMPHDALRFYARMVTAN-KSDSYTYSSLLKACADTRQLKLGKIMHCRVL 195
           WN++I G+  NG   +    + +M+  N + ++ T +S+L AC+    + LGK +H   +
Sbjct: 493 WNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSI 552

Query: 194 RSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRMSKRNVVAWNTIIAWYVKMGRYS 15
           R +      V ++L++MY+    G  ++    N+F +  +RN V + T+I  Y + G   
Sbjct: 553 RQYLDQNVFVASALVDMYSKA--GAIKY--AENMFSQTKERNSVTYTTMILGYGQHGMGE 608

Query: 14  KAL 6
           +A+
Sbjct: 609 RAI 611


>ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
           gi|11994734|dbj|BAB03063.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|110739449|dbj|BAF01634.1| hypothetical protein
           [Arabidopsis thaliana] gi|332643073|gb|AEE76594.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 820

 Score =  173 bits (438), Expect = 1e-41
 Identities = 82/147 (55%), Positives = 108/147 (73%), Gaps = 5/147 (3%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTA---NKSDSYTYS 264
           G P +AR+LFD +P+PT T+LWNTIIIGFICN +PH+AL FY+RM         D+YTYS
Sbjct: 53  GNPQLARQLFDAIPKPT-TVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYS 111

Query: 263 SLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTE--RFDLVGNVF 90
           S LKACA+T+ LK GK +HC ++R     + +V NSL+NMY SCLN  +   +D+V  VF
Sbjct: 112 STLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVF 171

Query: 89  DRMSKRNVVAWNTIIAWYVKMGRYSKA 9
           D M ++NVVAWNT+I+WYVK GR ++A
Sbjct: 172 DNMRRKNVVAWNTLISWYVKTGRNAEA 198



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 42/146 (28%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANK--SDSYTYSS 261
           G  + +RR+FD+     +  +WNT+I  ++ N    +++  +   + + +  SD  TY  
Sbjct: 265 GDIESSRRVFDSCVE-RNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLL 323

Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81
              A +  +Q++LG+  H  V ++  +L  ++ NSL+ MY+ C +  + F     VF  M
Sbjct: 324 AASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSF----GVFLSM 379

Query: 80  SKRNVVAWNTIIAWYVKMGRYSKALM 3
            +R+VV+WNT+I+ +V+ G   + LM
Sbjct: 380 RERDVVSWNTMISAFVQNGLDDEGLM 405


>ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  170 bits (430), Expect = 1e-40
 Identities = 94/153 (61%), Positives = 106/153 (69%), Gaps = 11/153 (7%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN--KSDSYTYSS 261
           G P  A  LFD++PRPT T+LWNTIIIGFICN MP DAL FYARM  +   K DSYT+SS
Sbjct: 51  GHPHQALHLFDSIPRPT-TVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSS 109

Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN-----GT----ERFD 108
            LKACA  R LKLGK +HC VLRSH   + IV NSLLNMY++CL      GT       D
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCD 169

Query: 107 LVGNVFDRMSKRNVVAWNTIIAWYVKMGRYSKA 9
           LV  VFD M KRNVVAWNT+I+WYVK  R  +A
Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEA 202



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 261
           G  D AR +FD      +T +WNT+I G++ N  P +A+  + +++ + +   D  T+ S
Sbjct: 269 GCVDFAREIFDCCLE-RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLS 327

Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81
            L A +  + L+LG+ +H  +L+S + L  ++ N+++ MY+ C +    F     VF  M
Sbjct: 328 ALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSF----KVFSNM 383

Query: 80  SKRNVVAWNTIIAWYVKMGRYSKALM 3
            +R+VV WNT+++ +V+ G   + LM
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLM 409



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
 Frame = -1

Query: 371 WNTIIIGFICNGMPHDALRFYARMVTAN-KSDSYTYSSLLKACADTRQLKLGKIMHCRVL 195
           WN +I G+  NG+  +    + +M+  N + ++ T +S+L AC     + LGK +H   +
Sbjct: 493 WNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI 552

Query: 194 RSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRMSKRNVVAWNTIIAWYVKMGRYS 15
           R        VG +LL+MY+     +       NVF    ++N V + T+I+ Y + G   
Sbjct: 553 RCFLNRNVFVGTALLDMYSK----SGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGE 608

Query: 14  KAL 6
           +AL
Sbjct: 609 RAL 611


>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  170 bits (430), Expect = 1e-40
 Identities = 94/153 (61%), Positives = 106/153 (69%), Gaps = 11/153 (7%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN--KSDSYTYSS 261
           G P  A  LFD++PRPT T+LWNTIIIGFICN MP DAL FYARM  +   K DSYT+SS
Sbjct: 51  GHPHQALHLFDSIPRPT-TVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSS 109

Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN-----GT----ERFD 108
            LKACA  R LKLGK +HC VLRSH   + IV NSLLNMY++CL      GT       D
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCD 169

Query: 107 LVGNVFDRMSKRNVVAWNTIIAWYVKMGRYSKA 9
           LV  VFD M KRNVVAWNT+I+WYVK  R  +A
Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEA 202



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 261
           G  D AR +FD      +T +WNT+I G++ N  P +A+  + +++ + +   D  T+ S
Sbjct: 269 GCVDFAREIFDCCLE-RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLS 327

Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81
            L A +  + L LG+ +H  +L+S + L  ++ N+++ MY+ C +    F     VF  M
Sbjct: 328 ALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSF----KVFSNM 383

Query: 80  SKRNVVAWNTIIAWYVKMGRYSKALM 3
            +R+VV WNT+++ +V+ G   + LM
Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLM 409



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
 Frame = -1

Query: 371 WNTIIIGFICNGMPHDALRFYARMVTAN-KSDSYTYSSLLKACADTRQLKLGKIMHCRVL 195
           WN +I G+  NG+  +    + +M+  N + ++ T +S+L AC     + LGK +H   +
Sbjct: 493 WNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI 552

Query: 194 RSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRMSKRNVVAWNTIIAWYVKMGRYS 15
           R        VG +LL+MY+     +       NVF    ++N V + T+I  Y + G   
Sbjct: 553 RCFLNQNVFVGTALLDMYSK----SGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGE 608

Query: 14  KAL 6
           +AL
Sbjct: 609 RAL 611


>ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|222854749|gb|EEE92296.1|
           predicted protein [Populus trichocarpa]
          Length = 465

 Score =  165 bits (417), Expect = 4e-39
 Identities = 83/154 (53%), Positives = 113/154 (73%), Gaps = 11/154 (7%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN---KSDSYTYS 264
           GQP +A +LFDT PRPT T++ NTIIIGFICN +P +A+ FY+++ +++   K DSYTYS
Sbjct: 56  GQPHIALQLFDTFPRPT-TVICNTIIIGFICNNLPLEAILFYSKLKSSSLGTKFDSYTYS 114

Query: 263 SLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGT--------ERFD 108
           S LKACA+TR LK+G+ +HC ++R  S  + IV NSLLNMY+SCL+           ++D
Sbjct: 115 STLKACAETRSLKIGRAIHCHLIRCLSNPSRIVYNSLLNMYSSCLSNVGCLSYLDYSKYD 174

Query: 107 LVGNVFDRMSKRNVVAWNTIIAWYVKMGRYSKAL 6
           LV  VFD M KR+VVAWNT+++WYVK  RY +A+
Sbjct: 175 LVHKVFDTMRKRDVVAWNTMVSWYVKTERYVEAI 208



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 42/146 (28%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
 Frame = -1

Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 261
           G  D AR++FD      +T +WNT+I G++ N +  + +  + + V   ++  D  T+ S
Sbjct: 274 GHIDFARKVFDHCLEK-NTEIWNTMIGGYVQNNLLIEGIDLFLKAVETEQTVLDDVTFLS 332

Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81
           +L A +  + L L +  H  V+++ +    ++ N+++ MY+ C +    F+    VF++M
Sbjct: 333 VLTAVSQLQCLDLAQQQHAFVIKNLAVFPVMITNAIIVMYSRCNSVHTSFE----VFEKM 388

Query: 80  SKRNVVAWNTIIAWYVKMGRYSKALM 3
            +R+VV+WNT+I+ +V+ G   + LM
Sbjct: 389 VERDVVSWNTMISAFVQNGMDDEGLM 414