BLASTX nr result
ID: Coptis25_contig00023883
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00023883 (434 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002883344.1| pentatricopeptide repeat-containing protein ... 173 1e-41 ref|NP_188854.1| pentatricopeptide repeat-containing protein [Ar... 173 1e-41 ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi... 170 1e-40 emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera] 170 1e-40 ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|2... 165 4e-39 >ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 824 Score = 173 bits (439), Expect = 1e-41 Identities = 85/151 (56%), Positives = 111/151 (73%), Gaps = 9/151 (5%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTA---NKSDSYTYS 264 G P +AR+LFD +P+PT T+LWNTIIIGFICN +PH+AL FY+RM K D+YTYS Sbjct: 53 GNPQLARQLFDAIPKPT-TVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYS 111 Query: 263 SLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN--GTE----RFDLV 102 S LKACA+T+ LK GK +HC ++R + +V NSL+NMY SCLN G+E +D+V Sbjct: 112 STLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPGSELDCFEYDVV 171 Query: 101 GNVFDRMSKRNVVAWNTIIAWYVKMGRYSKA 9 VFD M ++NVVAWNT+I+WYVK GR ++A Sbjct: 172 RKVFDNMRRKNVVAWNTLISWYVKTGRNAEA 202 Score = 63.2 bits (152), Expect = 2e-08 Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 2/146 (1%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANK--SDSYTYSS 261 G + +RR+FD+ + +WNT+I ++ N +++ + + + + SD T+ Sbjct: 269 GDLESSRRVFDSCVE-RNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLL 327 Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81 A + +Q++LG+ H V ++ +L ++ NSL+ MY+ C + F VF M Sbjct: 328 AASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSF----GVFHSM 383 Query: 80 SKRNVVAWNTIIAWYVKMGRYSKALM 3 +R+VV+WNT+I+ +V+ G + LM Sbjct: 384 RERDVVSWNTMISAFVQNGLDDEGLM 409 Score = 57.0 bits (136), Expect = 2e-06 Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 1/123 (0%) Frame = -1 Query: 371 WNTIIIGFICNGMPHDALRFYARMVTAN-KSDSYTYSSLLKACADTRQLKLGKIMHCRVL 195 WN++I G+ NG + + +M+ N + ++ T +S+L AC+ + LGK +H + Sbjct: 493 WNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSI 552 Query: 194 RSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRMSKRNVVAWNTIIAWYVKMGRYS 15 R + V ++L++MY+ G ++ N+F + +RN V + T+I Y + G Sbjct: 553 RQYLDQNVFVASALVDMYSKA--GAIKY--AENMFSQTKERNSVTYTTMILGYGQHGMGE 608 Query: 14 KAL 6 +A+ Sbjct: 609 RAI 611 >ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22150, chloroplastic; Flags: Precursor gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana] gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana] gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 820 Score = 173 bits (438), Expect = 1e-41 Identities = 82/147 (55%), Positives = 108/147 (73%), Gaps = 5/147 (3%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTA---NKSDSYTYS 264 G P +AR+LFD +P+PT T+LWNTIIIGFICN +PH+AL FY+RM D+YTYS Sbjct: 53 GNPQLARQLFDAIPKPT-TVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYS 111 Query: 263 SLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTE--RFDLVGNVF 90 S LKACA+T+ LK GK +HC ++R + +V NSL+NMY SCLN + +D+V VF Sbjct: 112 STLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVF 171 Query: 89 DRMSKRNVVAWNTIIAWYVKMGRYSKA 9 D M ++NVVAWNT+I+WYVK GR ++A Sbjct: 172 DNMRRKNVVAWNTLISWYVKTGRNAEA 198 Score = 64.7 bits (156), Expect = 7e-09 Identities = 42/146 (28%), Positives = 80/146 (54%), Gaps = 2/146 (1%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANK--SDSYTYSS 261 G + +RR+FD+ + +WNT+I ++ N +++ + + + + SD TY Sbjct: 265 GDIESSRRVFDSCVE-RNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLL 323 Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81 A + +Q++LG+ H V ++ +L ++ NSL+ MY+ C + + F VF M Sbjct: 324 AASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSF----GVFLSM 379 Query: 80 SKRNVVAWNTIIAWYVKMGRYSKALM 3 +R+VV+WNT+I+ +V+ G + LM Sbjct: 380 RERDVVSWNTMISAFVQNGLDDEGLM 405 >ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150, chloroplastic [Vitis vinifera] Length = 825 Score = 170 bits (430), Expect = 1e-40 Identities = 94/153 (61%), Positives = 106/153 (69%), Gaps = 11/153 (7%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN--KSDSYTYSS 261 G P A LFD++PRPT T+LWNTIIIGFICN MP DAL FYARM + K DSYT+SS Sbjct: 51 GHPHQALHLFDSIPRPT-TVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSS 109 Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN-----GT----ERFD 108 LKACA R LKLGK +HC VLRSH + IV NSLLNMY++CL GT D Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCD 169 Query: 107 LVGNVFDRMSKRNVVAWNTIIAWYVKMGRYSKA 9 LV VFD M KRNVVAWNT+I+WYVK R +A Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEA 202 Score = 77.4 bits (189), Expect = 1e-12 Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 2/146 (1%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 261 G D AR +FD +T +WNT+I G++ N P +A+ + +++ + + D T+ S Sbjct: 269 GCVDFAREIFDCCLE-RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLS 327 Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81 L A + + L+LG+ +H +L+S + L ++ N+++ MY+ C + F VF M Sbjct: 328 ALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSF----KVFSNM 383 Query: 80 SKRNVVAWNTIIAWYVKMGRYSKALM 3 +R+VV WNT+++ +V+ G + LM Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLM 409 Score = 58.5 bits (140), Expect = 5e-07 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Frame = -1 Query: 371 WNTIIIGFICNGMPHDALRFYARMVTAN-KSDSYTYSSLLKACADTRQLKLGKIMHCRVL 195 WN +I G+ NG+ + + +M+ N + ++ T +S+L AC + LGK +H + Sbjct: 493 WNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI 552 Query: 194 RSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRMSKRNVVAWNTIIAWYVKMGRYS 15 R VG +LL+MY+ + NVF ++N V + T+I+ Y + G Sbjct: 553 RCFLNRNVFVGTALLDMYSK----SGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGE 608 Query: 14 KAL 6 +AL Sbjct: 609 RAL 611 >emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera] Length = 825 Score = 170 bits (430), Expect = 1e-40 Identities = 94/153 (61%), Positives = 106/153 (69%), Gaps = 11/153 (7%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN--KSDSYTYSS 261 G P A LFD++PRPT T+LWNTIIIGFICN MP DAL FYARM + K DSYT+SS Sbjct: 51 GHPHQALHLFDSIPRPT-TVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSS 109 Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLN-----GT----ERFD 108 LKACA R LKLGK +HC VLRSH + IV NSLLNMY++CL GT D Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCD 169 Query: 107 LVGNVFDRMSKRNVVAWNTIIAWYVKMGRYSKA 9 LV VFD M KRNVVAWNT+I+WYVK R +A Sbjct: 170 LVRRVFDTMRKRNVVAWNTMISWYVKTERLIEA 202 Score = 76.6 bits (187), Expect = 2e-12 Identities = 45/146 (30%), Positives = 82/146 (56%), Gaps = 2/146 (1%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 261 G D AR +FD +T +WNT+I G++ N P +A+ + +++ + + D T+ S Sbjct: 269 GCVDFAREIFDCCLE-RNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLS 327 Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81 L A + + L LG+ +H +L+S + L ++ N+++ MY+ C + F VF M Sbjct: 328 ALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSF----KVFSNM 383 Query: 80 SKRNVVAWNTIIAWYVKMGRYSKALM 3 +R+VV WNT+++ +V+ G + LM Sbjct: 384 LERDVVTWNTMVSAFVQNGLDDEGLM 409 Score = 57.8 bits (138), Expect = 9e-07 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 1/123 (0%) Frame = -1 Query: 371 WNTIIIGFICNGMPHDALRFYARMVTAN-KSDSYTYSSLLKACADTRQLKLGKIMHCRVL 195 WN +I G+ NG+ + + +M+ N + ++ T +S+L AC + LGK +H + Sbjct: 493 WNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAI 552 Query: 194 RSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRMSKRNVVAWNTIIAWYVKMGRYS 15 R VG +LL+MY+ + NVF ++N V + T+I Y + G Sbjct: 553 RCFLNQNVFVGTALLDMYSK----SGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGE 608 Query: 14 KAL 6 +AL Sbjct: 609 RAL 611 >ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|222854749|gb|EEE92296.1| predicted protein [Populus trichocarpa] Length = 465 Score = 165 bits (417), Expect = 4e-39 Identities = 83/154 (53%), Positives = 113/154 (73%), Gaps = 11/154 (7%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTAN---KSDSYTYS 264 GQP +A +LFDT PRPT T++ NTIIIGFICN +P +A+ FY+++ +++ K DSYTYS Sbjct: 56 GQPHIALQLFDTFPRPT-TVICNTIIIGFICNNLPLEAILFYSKLKSSSLGTKFDSYTYS 114 Query: 263 SLLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGT--------ERFD 108 S LKACA+TR LK+G+ +HC ++R S + IV NSLLNMY+SCL+ ++D Sbjct: 115 STLKACAETRSLKIGRAIHCHLIRCLSNPSRIVYNSLLNMYSSCLSNVGCLSYLDYSKYD 174 Query: 107 LVGNVFDRMSKRNVVAWNTIIAWYVKMGRYSKAL 6 LV VFD M KR+VVAWNT+++WYVK RY +A+ Sbjct: 175 LVHKVFDTMRKRDVVAWNTMVSWYVKTERYVEAI 208 Score = 72.0 bits (175), Expect = 5e-11 Identities = 42/146 (28%), Positives = 83/146 (56%), Gaps = 2/146 (1%) Frame = -1 Query: 434 GQPDMARRLFDTLPRPTSTLLWNTIIIGFICNGMPHDALRFYARMVTANKS--DSYTYSS 261 G D AR++FD +T +WNT+I G++ N + + + + + V ++ D T+ S Sbjct: 274 GHIDFARKVFDHCLEK-NTEIWNTMIGGYVQNNLLIEGIDLFLKAVETEQTVLDDVTFLS 332 Query: 260 LLKACADTRQLKLGKIMHCRVLRSHSKLTTIVGNSLLNMYTSCLNGTERFDLVGNVFDRM 81 +L A + + L L + H V+++ + ++ N+++ MY+ C + F+ VF++M Sbjct: 333 VLTAVSQLQCLDLAQQQHAFVIKNLAVFPVMITNAIIVMYSRCNSVHTSFE----VFEKM 388 Query: 80 SKRNVVAWNTIIAWYVKMGRYSKALM 3 +R+VV+WNT+I+ +V+ G + LM Sbjct: 389 VERDVVSWNTMISAFVQNGMDDEGLM 414