BLASTX nr result

ID: Coptis25_contig00023861 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023861
         (1605 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002464455.1| hypothetical protein SORBIDRAFT_01g018700 [S...   643   0.0  
ref|XP_003571920.1| PREDICTED: DNA ligase 1-like [Brachypodium d...   639   0.0  
tpg|DAA49534.1| TPA: putative DNA ligase family protein [Zea mays]    637   e-180
gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa Japo...   632   e-179
ref|NP_001064917.1| Os10g0489200 [Oryza sativa Japonica Group] g...   632   e-179

>ref|XP_002464455.1| hypothetical protein SORBIDRAFT_01g018700 [Sorghum bicolor]
            gi|241918309|gb|EER91453.1| hypothetical protein
            SORBIDRAFT_01g018700 [Sorghum bicolor]
          Length = 905

 Score =  643 bits (1659), Expect = 0.0
 Identities = 320/440 (72%), Positives = 376/440 (85%)
 Frame = +2

Query: 284  IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
            ++ K S+  P  +AYWK GE VPFLFLA+A D+I+NES RI ITEIL NVF TV+ TTP 
Sbjct: 296  LKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMATTPD 355

Query: 464  DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
            DL++ VYLSAN+IAP H+GIELGIGDAS+I+ALAEAYGR+  H+K  L+ LGDLGLVAKA
Sbjct: 356  DLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGDLGLVAKA 415

Query: 644  SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
            SRSSQ++MFKP PLT+ +VL TFRAIAKESG +SQ+KK+NH+KGLLVAATDCEPQY+ RL
Sbjct: 416  SRSSQKMMFKPKPLTIARVLSTFRAIAKESGKDSQDKKRNHMKGLLVAATDCEPQYITRL 475

Query: 824  LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
            LQSK+RIGLAE+T+ +ALG AAVYS+K S+P  + QS  EEAAK +KQ YSVLP YD I+
Sbjct: 476  LQSKMRIGLAEKTVQMALGQAAVYSDKNSSPP-KVQSPFEEAAKIIKQAYSVLPIYDKIV 534

Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
             A+L+ GV KL ETC F++GVP+GPMLAK TK VSEI+DKFQ  E+TCEYKYDGERAQIH
Sbjct: 535  PAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 594

Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
             +EDGSVEIYSRNAERNTGK+PDVV +V RF+  +V+SFVLDCE+VAYDREKQKILPFQ+
Sbjct: 595  CMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKQKILPFQI 654

Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
            LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLK+RRE LYNSF+EVPG F  AT
Sbjct: 655  LSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKIRREHLYNSFEEVPGVFQLAT 714

Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
            AITSNDLEEIQKFLD AVNS
Sbjct: 715  AITSNDLEEIQKFLDTAVNS 734


>ref|XP_003571920.1| PREDICTED: DNA ligase 1-like [Brachypodium distachyon]
          Length = 918

 Score =  639 bits (1649), Expect = 0.0
 Identities = 319/440 (72%), Positives = 376/440 (85%)
 Frame = +2

Query: 284  IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
            ++ K S+  P  +AYWK  E VPFLFLA+A D+I+NES RI ITEIL NVF T+I TTP+
Sbjct: 281  LKKKGSEFDPMAAAYWKPTEPVPFLFLAQALDLISNESGRIVITEILSNVFRTIIATTPE 340

Query: 464  DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
            DL++ VYLSAN+IAP H+GIELGIGDASII+ALAEAYGR+  H+K  L+ LGDLGLVAKA
Sbjct: 341  DLLATVYLSANRIAPPHEGIELGIGDASIIRALAEAYGRKEEHVKKNLKELGDLGLVAKA 400

Query: 644  SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
            SR SQ++M+KP PLT+ +VLDTFR IAKESG +SQ+KK++HIKGLLVAATDCEPQY+IRL
Sbjct: 401  SRLSQKMMYKPKPLTIARVLDTFRTIAKESGKDSQDKKRSHIKGLLVAATDCEPQYIIRL 460

Query: 824  LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
            LQSK+RIGLAE+T+ +ALG AAVYSE E +P ++ QS  EEAAK +KQ YSVLP YD I+
Sbjct: 461  LQSKMRIGLAEKTVQMALGQAAVYSE-EGSPPAKVQSPFEEAAKIIKQAYSVLPIYDRIV 519

Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
              LL+ GV KL ETC+F++GVP+GPMLAK TK VSEI+DKFQ  E+TCEYKYDGERAQIH
Sbjct: 520  PTLLEAGVWKLPETCNFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 579

Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
             +EDGSVEIYSRNAERNTGK+PDVV +V RF+  +V+SFVLDCE+VAYDREK+KILPFQ+
Sbjct: 580  CMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPAVKSFVLDCEIVAYDREKKKILPFQI 639

Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
            LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLKVRRE LYNSF+EVPG F  AT
Sbjct: 640  LSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKVRREHLYNSFEEVPGIFQLAT 699

Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
            AITSNDLEEIQKFLD AVNS
Sbjct: 700  AITSNDLEEIQKFLDVAVNS 719


>tpg|DAA49534.1| TPA: putative DNA ligase family protein [Zea mays]
          Length = 909

 Score =  637 bits (1643), Expect = e-180
 Identities = 317/440 (72%), Positives = 373/440 (84%)
 Frame = +2

Query: 284  IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
            ++ K S+  P   AYWK GE VPFLFLA+A D+I+NES RI ITEIL NVF TV+ TTP 
Sbjct: 274  LKKKGSEFDPMAVAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMATTPD 333

Query: 464  DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
            DL++ VYLSAN+IAP H+GIELGIGDAS+I+ALAEAYGR+  H+K  L+ LGDLGLVAKA
Sbjct: 334  DLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGDLGLVAKA 393

Query: 644  SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
            SRSSQ++MFKP PLT+ +VL TFR IAKESG +SQ+KK+NH+KGLLVAATDCEPQY+ RL
Sbjct: 394  SRSSQKMMFKPKPLTIARVLSTFRTIAKESGKDSQDKKRNHMKGLLVAATDCEPQYITRL 453

Query: 824  LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
            LQSK+RIGLAE+T+ +ALG AAVY++K   P  + QS  EEAAK +KQ YSVLP YD I+
Sbjct: 454  LQSKMRIGLAEKTVQMALGQAAVYADKNPLPP-KVQSPFEEAAKIIKQAYSVLPIYDKIV 512

Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
             A+L+ GV KL ETC F++GVP+GPMLAK TK VSEI+DKFQ  E+TCEYKYDGERAQIH
Sbjct: 513  PAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 572

Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
             +EDGSVEIYSRNAERNTGK+PDVV +V RF+ ++V+SFVLDCE+VAYDREKQKILPFQ+
Sbjct: 573  CMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKATVKSFVLDCEIVAYDREKQKILPFQI 632

Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
            LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLK+RRE LYNSF+EVPG F  AT
Sbjct: 633  LSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKIRREHLYNSFEEVPGVFKLAT 692

Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
            AITSNDLEEIQKFLD AVNS
Sbjct: 693  AITSNDLEEIQKFLDTAVNS 712


>gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa Japonica Group]
            gi|31432783|gb|AAP54376.1| DNA ligase, putative,
            expressed [Oryza sativa Japonica Group]
            gi|40539108|gb|AAR87364.1| putative DNA ligase [Oryza
            sativa Japonica Group]
          Length = 810

 Score =  632 bits (1630), Expect = e-179
 Identities = 320/440 (72%), Positives = 370/440 (84%)
 Frame = +2

Query: 284  IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
            ++ K S+  P  +AYW   E VPFLFLA+A D+I+NES RI ITEIL NVF TVI TTP+
Sbjct: 174  LKKKGSEFNPMAAAYWSPEEPVPFLFLARALDLISNESGRIVITEILSNVFRTVIATTPE 233

Query: 464  DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
            DL++ VYLSAN+IAP H+G ELGIGDASII+ALAEAYGR   H+K  L+ LGDLGLVAKA
Sbjct: 234  DLLATVYLSANRIAPPHEGTELGIGDASIIRALAEAYGRREEHVKKNLKELGDLGLVAKA 293

Query: 644  SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
            SR SQ++M+KP PLT+  VL  FR IAKESG +SQ+KK+NHIKGLLVAATDCEPQY+ RL
Sbjct: 294  SRLSQKMMYKPKPLTISHVLAKFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQYITRL 353

Query: 824  LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
            LQSK+RIGLAE+T+ +ALG AAVYSEK S PS + QS  EEAAK +KQVYSVLP YD I+
Sbjct: 354  LQSKMRIGLAEKTVQMALGQAAVYSEKHSPPS-KIQSPFEEAAKIIKQVYSVLPIYDKIV 412

Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
             A+L+ GV KL E CSF++GVP+GPMLAK TK VSEI+DKFQ  E+TCEYKYDGERAQIH
Sbjct: 413  PAILEVGVWKLPEICSFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 472

Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
             LEDGSVEIYSRNAERNTGK+PDVV +V RF+  +V+SFVLDCE+VAYDREK+KILPFQ+
Sbjct: 473  CLEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPFQI 532

Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
            LSTRARKGV +SDI V VC F FDILY+NG+ LLQEQLKVRRE LYNSF+EVPG F  AT
Sbjct: 533  LSTRARKGVTISDIKVSVCTFGFDILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLAT 592

Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
            +ITSNDLEEIQKFLD AVNS
Sbjct: 593  SITSNDLEEIQKFLDTAVNS 612


>ref|NP_001064917.1| Os10g0489200 [Oryza sativa Japonica Group]
            gi|113639526|dbj|BAF26831.1| Os10g0489200 [Oryza sativa
            Japonica Group]
          Length = 828

 Score =  632 bits (1630), Expect = e-179
 Identities = 320/440 (72%), Positives = 370/440 (84%)
 Frame = +2

Query: 284  IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
            ++ K S+  P  +AYW   E VPFLFLA+A D+I+NES RI ITEIL NVF TVI TTP+
Sbjct: 280  LKKKGSEFNPMAAAYWSPEEPVPFLFLARALDLISNESGRIVITEILSNVFRTVIATTPE 339

Query: 464  DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
            DL++ VYLSAN+IAP H+G ELGIGDASII+ALAEAYGR   H+K  L+ LGDLGLVAKA
Sbjct: 340  DLLATVYLSANRIAPPHEGTELGIGDASIIRALAEAYGRREEHVKKNLKELGDLGLVAKA 399

Query: 644  SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
            SR SQ++M+KP PLT+  VL  FR IAKESG +SQ+KK+NHIKGLLVAATDCEPQY+ RL
Sbjct: 400  SRLSQKMMYKPKPLTISHVLAKFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQYITRL 459

Query: 824  LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
            LQSK+RIGLAE+T+ +ALG AAVYSEK S PS + QS  EEAAK +KQVYSVLP YD I+
Sbjct: 460  LQSKMRIGLAEKTVQMALGQAAVYSEKHSPPS-KIQSPFEEAAKIIKQVYSVLPIYDKIV 518

Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
             A+L+ GV KL E CSF++GVP+GPMLAK TK VSEI+DKFQ  E+TCEYKYDGERAQIH
Sbjct: 519  PAILEVGVWKLPEICSFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 578

Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
             LEDGSVEIYSRNAERNTGK+PDVV +V RF+  +V+SFVLDCE+VAYDREK+KILPFQ+
Sbjct: 579  CLEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPFQI 638

Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
            LSTRARKGV +SDI V VC F FDILY+NG+ LLQEQLKVRRE LYNSF+EVPG F  AT
Sbjct: 639  LSTRARKGVTISDIKVSVCTFGFDILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLAT 698

Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
            +ITSNDLEEIQKFLD AVNS
Sbjct: 699  SITSNDLEEIQKFLDTAVNS 718


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