BLASTX nr result
ID: Coptis25_contig00023861
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00023861
(1605 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002464455.1| hypothetical protein SORBIDRAFT_01g018700 [S... 643 0.0
ref|XP_003571920.1| PREDICTED: DNA ligase 1-like [Brachypodium d... 639 0.0
tpg|DAA49534.1| TPA: putative DNA ligase family protein [Zea mays] 637 e-180
gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa Japo... 632 e-179
ref|NP_001064917.1| Os10g0489200 [Oryza sativa Japonica Group] g... 632 e-179
>ref|XP_002464455.1| hypothetical protein SORBIDRAFT_01g018700 [Sorghum bicolor]
gi|241918309|gb|EER91453.1| hypothetical protein
SORBIDRAFT_01g018700 [Sorghum bicolor]
Length = 905
Score = 643 bits (1659), Expect = 0.0
Identities = 320/440 (72%), Positives = 376/440 (85%)
Frame = +2
Query: 284 IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
++ K S+ P +AYWK GE VPFLFLA+A D+I+NES RI ITEIL NVF TV+ TTP
Sbjct: 296 LKKKGSEFDPMAAAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMATTPD 355
Query: 464 DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
DL++ VYLSAN+IAP H+GIELGIGDAS+I+ALAEAYGR+ H+K L+ LGDLGLVAKA
Sbjct: 356 DLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGDLGLVAKA 415
Query: 644 SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
SRSSQ++MFKP PLT+ +VL TFRAIAKESG +SQ+KK+NH+KGLLVAATDCEPQY+ RL
Sbjct: 416 SRSSQKMMFKPKPLTIARVLSTFRAIAKESGKDSQDKKRNHMKGLLVAATDCEPQYITRL 475
Query: 824 LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
LQSK+RIGLAE+T+ +ALG AAVYS+K S+P + QS EEAAK +KQ YSVLP YD I+
Sbjct: 476 LQSKMRIGLAEKTVQMALGQAAVYSDKNSSPP-KVQSPFEEAAKIIKQAYSVLPIYDKIV 534
Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
A+L+ GV KL ETC F++GVP+GPMLAK TK VSEI+DKFQ E+TCEYKYDGERAQIH
Sbjct: 535 PAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 594
Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
+EDGSVEIYSRNAERNTGK+PDVV +V RF+ +V+SFVLDCE+VAYDREKQKILPFQ+
Sbjct: 595 CMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKQKILPFQI 654
Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLK+RRE LYNSF+EVPG F AT
Sbjct: 655 LSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKIRREHLYNSFEEVPGVFQLAT 714
Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
AITSNDLEEIQKFLD AVNS
Sbjct: 715 AITSNDLEEIQKFLDTAVNS 734
>ref|XP_003571920.1| PREDICTED: DNA ligase 1-like [Brachypodium distachyon]
Length = 918
Score = 639 bits (1649), Expect = 0.0
Identities = 319/440 (72%), Positives = 376/440 (85%)
Frame = +2
Query: 284 IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
++ K S+ P +AYWK E VPFLFLA+A D+I+NES RI ITEIL NVF T+I TTP+
Sbjct: 281 LKKKGSEFDPMAAAYWKPTEPVPFLFLAQALDLISNESGRIVITEILSNVFRTIIATTPE 340
Query: 464 DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
DL++ VYLSAN+IAP H+GIELGIGDASII+ALAEAYGR+ H+K L+ LGDLGLVAKA
Sbjct: 341 DLLATVYLSANRIAPPHEGIELGIGDASIIRALAEAYGRKEEHVKKNLKELGDLGLVAKA 400
Query: 644 SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
SR SQ++M+KP PLT+ +VLDTFR IAKESG +SQ+KK++HIKGLLVAATDCEPQY+IRL
Sbjct: 401 SRLSQKMMYKPKPLTIARVLDTFRTIAKESGKDSQDKKRSHIKGLLVAATDCEPQYIIRL 460
Query: 824 LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
LQSK+RIGLAE+T+ +ALG AAVYSE E +P ++ QS EEAAK +KQ YSVLP YD I+
Sbjct: 461 LQSKMRIGLAEKTVQMALGQAAVYSE-EGSPPAKVQSPFEEAAKIIKQAYSVLPIYDRIV 519
Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
LL+ GV KL ETC+F++GVP+GPMLAK TK VSEI+DKFQ E+TCEYKYDGERAQIH
Sbjct: 520 PTLLEAGVWKLPETCNFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 579
Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
+EDGSVEIYSRNAERNTGK+PDVV +V RF+ +V+SFVLDCE+VAYDREK+KILPFQ+
Sbjct: 580 CMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPAVKSFVLDCEIVAYDREKKKILPFQI 639
Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLKVRRE LYNSF+EVPG F AT
Sbjct: 640 LSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKVRREHLYNSFEEVPGIFQLAT 699
Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
AITSNDLEEIQKFLD AVNS
Sbjct: 700 AITSNDLEEIQKFLDVAVNS 719
>tpg|DAA49534.1| TPA: putative DNA ligase family protein [Zea mays]
Length = 909
Score = 637 bits (1643), Expect = e-180
Identities = 317/440 (72%), Positives = 373/440 (84%)
Frame = +2
Query: 284 IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
++ K S+ P AYWK GE VPFLFLA+A D+I+NES RI ITEIL NVF TV+ TTP
Sbjct: 274 LKKKGSEFDPMAVAYWKPGEPVPFLFLARALDLISNESGRIVITEILSNVFRTVMATTPD 333
Query: 464 DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
DL++ VYLSAN+IAP H+GIELGIGDAS+I+ALAEAYGR+ H+K L+ LGDLGLVAKA
Sbjct: 334 DLLATVYLSANRIAPPHEGIELGIGDASVIRALAEAYGRKEEHVKKDLKELGDLGLVAKA 393
Query: 644 SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
SRSSQ++MFKP PLT+ +VL TFR IAKESG +SQ+KK+NH+KGLLVAATDCEPQY+ RL
Sbjct: 394 SRSSQKMMFKPKPLTIARVLSTFRTIAKESGKDSQDKKRNHMKGLLVAATDCEPQYITRL 453
Query: 824 LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
LQSK+RIGLAE+T+ +ALG AAVY++K P + QS EEAAK +KQ YSVLP YD I+
Sbjct: 454 LQSKMRIGLAEKTVQMALGQAAVYADKNPLPP-KVQSPFEEAAKIIKQAYSVLPIYDKIV 512
Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
A+L+ GV KL ETC F++GVP+GPMLAK TK VSEI+DKFQ E+TCEYKYDGERAQIH
Sbjct: 513 PAILEVGVWKLPETCKFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 572
Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
+EDGSVEIYSRNAERNTGK+PDVV +V RF+ ++V+SFVLDCE+VAYDREKQKILPFQ+
Sbjct: 573 CMEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKATVKSFVLDCEIVAYDREKQKILPFQI 632
Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
LSTRARKGV ++DI V VC F FDILY+NG+ LLQEQLK+RRE LYNSF+EVPG F AT
Sbjct: 633 LSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKIRREHLYNSFEEVPGVFKLAT 692
Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
AITSNDLEEIQKFLD AVNS
Sbjct: 693 AITSNDLEEIQKFLDTAVNS 712
>gb|AAL31067.1|AC090120_13 putative DNA ligase [Oryza sativa Japonica Group]
gi|31432783|gb|AAP54376.1| DNA ligase, putative,
expressed [Oryza sativa Japonica Group]
gi|40539108|gb|AAR87364.1| putative DNA ligase [Oryza
sativa Japonica Group]
Length = 810
Score = 632 bits (1630), Expect = e-179
Identities = 320/440 (72%), Positives = 370/440 (84%)
Frame = +2
Query: 284 IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
++ K S+ P +AYW E VPFLFLA+A D+I+NES RI ITEIL NVF TVI TTP+
Sbjct: 174 LKKKGSEFNPMAAAYWSPEEPVPFLFLARALDLISNESGRIVITEILSNVFRTVIATTPE 233
Query: 464 DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
DL++ VYLSAN+IAP H+G ELGIGDASII+ALAEAYGR H+K L+ LGDLGLVAKA
Sbjct: 234 DLLATVYLSANRIAPPHEGTELGIGDASIIRALAEAYGRREEHVKKNLKELGDLGLVAKA 293
Query: 644 SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
SR SQ++M+KP PLT+ VL FR IAKESG +SQ+KK+NHIKGLLVAATDCEPQY+ RL
Sbjct: 294 SRLSQKMMYKPKPLTISHVLAKFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQYITRL 353
Query: 824 LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
LQSK+RIGLAE+T+ +ALG AAVYSEK S PS + QS EEAAK +KQVYSVLP YD I+
Sbjct: 354 LQSKMRIGLAEKTVQMALGQAAVYSEKHSPPS-KIQSPFEEAAKIIKQVYSVLPIYDKIV 412
Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
A+L+ GV KL E CSF++GVP+GPMLAK TK VSEI+DKFQ E+TCEYKYDGERAQIH
Sbjct: 413 PAILEVGVWKLPEICSFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 472
Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
LEDGSVEIYSRNAERNTGK+PDVV +V RF+ +V+SFVLDCE+VAYDREK+KILPFQ+
Sbjct: 473 CLEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPFQI 532
Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
LSTRARKGV +SDI V VC F FDILY+NG+ LLQEQLKVRRE LYNSF+EVPG F AT
Sbjct: 533 LSTRARKGVTISDIKVSVCTFGFDILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLAT 592
Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
+ITSNDLEEIQKFLD AVNS
Sbjct: 593 SITSNDLEEIQKFLDTAVNS 612
>ref|NP_001064917.1| Os10g0489200 [Oryza sativa Japonica Group]
gi|113639526|dbj|BAF26831.1| Os10g0489200 [Oryza sativa
Japonica Group]
Length = 828
Score = 632 bits (1630), Expect = e-179
Identities = 320/440 (72%), Positives = 370/440 (84%)
Frame = +2
Query: 284 IETKISQLKPKLSAYWKQGESVPFLFLAKAFDMIANESSRITITEILCNVFTTVIHTTPK 463
++ K S+ P +AYW E VPFLFLA+A D+I+NES RI ITEIL NVF TVI TTP+
Sbjct: 280 LKKKGSEFNPMAAAYWSPEEPVPFLFLARALDLISNESGRIVITEILSNVFRTVIATTPE 339
Query: 464 DLISVVYLSANKIAPAHQGIELGIGDASIIKALAEAYGREVVHIKSQLETLGDLGLVAKA 643
DL++ VYLSAN+IAP H+G ELGIGDASII+ALAEAYGR H+K L+ LGDLGLVAKA
Sbjct: 340 DLLATVYLSANRIAPPHEGTELGIGDASIIRALAEAYGRREEHVKKNLKELGDLGLVAKA 399
Query: 644 SRSSQRVMFKPAPLTVVKVLDTFRAIAKESGNNSQEKKKNHIKGLLVAATDCEPQYLIRL 823
SR SQ++M+KP PLT+ VL FR IAKESG +SQ+KK+NHIKGLLVAATDCEPQY+ RL
Sbjct: 400 SRLSQKMMYKPKPLTISHVLAKFRTIAKESGKDSQDKKRNHIKGLLVAATDCEPQYITRL 459
Query: 824 LQSKLRIGLAEQTLLVALGHAAVYSEKESAPSSQTQSSLEEAAKAVKQVYSVLPNYDLII 1003
LQSK+RIGLAE+T+ +ALG AAVYSEK S PS + QS EEAAK +KQVYSVLP YD I+
Sbjct: 460 LQSKMRIGLAEKTVQMALGQAAVYSEKHSPPS-KIQSPFEEAAKIIKQVYSVLPIYDKIV 518
Query: 1004 AALLDGGVCKLSETCSFTLGVPIGPMLAKPTKGVSEILDKFQDTEFTCEYKYDGERAQIH 1183
A+L+ GV KL E CSF++GVP+GPMLAK TK VSEI+DKFQ E+TCEYKYDGERAQIH
Sbjct: 519 PAILEVGVWKLPEICSFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 578
Query: 1184 YLEDGSVEIYSRNAERNTGKFPDVVSSVERFKHSSVRSFVLDCEVVAYDREKQKILPFQV 1363
LEDGSVEIYSRNAERNTGK+PDVV +V RF+ +V+SFVLDCE+VAYDREK+KILPFQ+
Sbjct: 579 CLEDGSVEIYSRNAERNTGKYPDVVDAVSRFRKPTVKSFVLDCEIVAYDREKKKILPFQI 638
Query: 1364 LSTRARKGVVMSDITVKVCIFAFDILYLNGQSLLQEQLKVRRELLYNSFQEVPGEFYFAT 1543
LSTRARKGV +SDI V VC F FDILY+NG+ LLQEQLKVRRE LYNSF+EVPG F AT
Sbjct: 639 LSTRARKGVTISDIKVSVCTFGFDILYINGKPLLQEQLKVRREHLYNSFEEVPGVFQLAT 698
Query: 1544 AITSNDLEEIQKFLDAAVNS 1603
+ITSNDLEEIQKFLD AVNS
Sbjct: 699 SITSNDLEEIQKFLDTAVNS 718