BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023854
         (567 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    87   2e-15
ref|XP_002520999.1| pentatricopeptide repeat-containing protein,...    77   2e-12
ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containi...    70   3e-10
ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containi...    70   3e-10
ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containi...    62   7e-08

>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 44/67 (65%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
 Frame = -1

Query: 567 GVAPNVVTFNTLMRGFL-NEEPQKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREY 391
           G APN+VTFNTLMRGF  N+E QKVV+ L +M +K+  PDAST +IV++LLSKDEK REY
Sbjct: 548 GCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREY 607

Query: 390 LNSFPTF 370
           L+  PTF
Sbjct: 608 LHLLPTF 614


>ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539836|gb|EEF41416.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 628

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 41/67 (61%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = -1

Query: 567 GVAPNVVTFNTLMRGF-LNEEPQKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREY 391
           G APNVVTFNTLMRG  LN E  K+V+ LHKM  + L PDAST  IV+++L KDE   E 
Sbjct: 556 GCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHEC 615

Query: 390 LNSFPTF 370
           LN  PTF
Sbjct: 616 LNLLPTF 622


>ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
 Frame = -1

Query: 567 GVAPNVVTFNTLMRGFLNEEP-QKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREY 391
           G  P+++T+NTLMRGF      ++VVQ LH+M  K++ PDA T +IV+++LSKDEK +E 
Sbjct: 525 GCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQEC 584

Query: 390 LNSFPTF 370
           L+  P F
Sbjct: 585 LHLLPRF 591


>ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 33/67 (49%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
 Frame = -1

Query: 567 GVAPNVVTFNTLMRGFLNEEP-QKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREY 391
           G  P+++T+NTLMRGF      ++VVQ LH+M  K++ PDA T +IV+++LSKDEK +E 
Sbjct: 500 GCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQEC 559

Query: 390 LNSFPTF 370
           L+  P F
Sbjct: 560 LHLLPRF 566


>ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 225

 Score = 62.0 bits (149), Expect = 7e-08
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -1

Query: 567 GVAPNVVTFNTLMRGFL-NEEPQKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREY 391
           G  P+++T+NTL+ GF  + +  +VV+ LHKM  +++ PDA +  IVI++L KDEK +E 
Sbjct: 151 GCTPDIITYNTLLCGFCQSNKSDEVVKLLHKMIQRDMSPDAISCNIVIDMLRKDEKYQEC 210

Query: 390 LNSFPTFLPEHKQ 352
           L+  P FL + ++
Sbjct: 211 LDLLPRFLVQERR 223