BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023827
         (794 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528032.1| pentatricopeptide repeat-containing protein,...   212   7e-53
emb|CBI31329.3| unnamed protein product [Vitis vinifera]              211   1e-52
ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containi...   211   1e-52
emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]   211   1e-52
ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|2...   210   2e-52

>ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532562|gb|EEF34350.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 730

 Score =  212 bits (540), Expect = 7e-53
 Identities = 109/181 (60%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
 Frame = +3

Query: 3    KDHXXXXXXXXXXYSKSGKMLEAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDE 182
            KD+          Y++SGK+LEA+R+FDS+S +D+VTYTSLIAGYG+QG G  ALKLFDE
Sbjct: 464  KDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDE 523

Query: 183  MNMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMINVYRINPRIEHFSCMVDLFGNAG 362
            M    I+ DH+TMVAVLSACSHSGLV EG  +F  M + Y I PR+EHF+CMVDLFG AG
Sbjct: 524  MKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAG 583

Query: 363  LLRKAVQIITEMPYRPSHAMLATLVSASRIYGNTTIMDWAT-KMLEVRPED*IHHLLIAK 539
            LL KA ++IT MPYRPS AM ATL+ A RI+GN  I +WA  K+LE+RPE+  +++LIA 
Sbjct: 584  LLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIAN 643

Query: 540  L 542
            +
Sbjct: 644  M 644


>emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  211 bits (537), Expect = 1e-52
 Identities = 103/181 (56%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
 Frame = +3

Query: 3   KDHXXXXXXXXXXYSKSGKMLEAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDE 182
           KDH          Y++SGK+LEA+R+FD +  +DK+TYTS+IAGYGMQG G  ALKLF+E
Sbjct: 426 KDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEE 485

Query: 183 MNMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMINVYRINPRIEHFSCMVDLFGNAG 362
           MN   I+ DHITM+AVLSACSHSGLV +GQ++F KM ++Y + P +EHF+CM DLFG AG
Sbjct: 486 MNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAG 545

Query: 363 LLRKAVQIITEMPYRPSHAMLATLVSASRIYGNTTIMDWAT-KMLEVRPED*IHHLLIAK 539
           LL KA +II  MPY+P+ AM ATL+ A RI+ NT I +WA  K+LE++PE+  +++LIA 
Sbjct: 546 LLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIAN 605

Query: 540 L 542
           +
Sbjct: 606 M 606


>ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like
            [Vitis vinifera]
          Length = 748

 Score =  211 bits (537), Expect = 1e-52
 Identities = 103/181 (56%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
 Frame = +3

Query: 3    KDHXXXXXXXXXXYSKSGKMLEAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDE 182
            KDH          Y++SGK+LEA+R+FD +  +DK+TYTS+IAGYGMQG G  ALKLF+E
Sbjct: 471  KDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEE 530

Query: 183  MNMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMINVYRINPRIEHFSCMVDLFGNAG 362
            MN   I+ DHITM+AVLSACSHSGLV +GQ++F KM ++Y + P +EHF+CM DLFG AG
Sbjct: 531  MNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAG 590

Query: 363  LLRKAVQIITEMPYRPSHAMLATLVSASRIYGNTTIMDWAT-KMLEVRPED*IHHLLIAK 539
            LL KA +II  MPY+P+ AM ATL+ A RI+ NT I +WA  K+LE++PE+  +++LIA 
Sbjct: 591  LLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIAN 650

Query: 540  L 542
            +
Sbjct: 651  M 651


>emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  211 bits (537), Expect = 1e-52
 Identities = 103/181 (56%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
 Frame = +3

Query: 3    KDHXXXXXXXXXXYSKSGKMLEAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDE 182
            KDH          Y++SGK+LEA+R+FD +  +DK+TYTS+IAGYGMQG G  ALKLF+E
Sbjct: 545  KDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEE 604

Query: 183  MNMSGIEADHITMVAVLSACSHSGLVDEGQMMFAKMINVYRINPRIEHFSCMVDLFGNAG 362
            MN   I+ DHITM+AVLSACSHSGLV +GQ++F KM ++Y + P +EHF+CM DLFG AG
Sbjct: 605  MNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAG 664

Query: 363  LLRKAVQIITEMPYRPSHAMLATLVSASRIYGNTTIMDWAT-KMLEVRPED*IHHLLIAK 539
            LL KA +II  MPY+P+ AM ATL+ A RI+ NT I +WA  K+LE++PE+  +++LIA 
Sbjct: 665  LLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIAN 724

Query: 540  L 542
            +
Sbjct: 725  M 725


>ref|XP_002325515.1| predicted protein [Populus trichocarpa] gi|222862390|gb|EEE99896.1|
           predicted protein [Populus trichocarpa]
          Length = 683

 Score =  210 bits (535), Expect = 2e-52
 Identities = 106/168 (63%), Positives = 133/168 (79%), Gaps = 1/168 (0%)
 Frame = +3

Query: 42  YSKSGKMLEAQRIFDSMSVKDKVTYTSLIAGYGMQGRGHWALKLFDEMNMSGIEADHITM 221
           Y++SGK+L A+R+FDS+  +DKVTYTSLIAGYG+QG G  ALKLFDEM    I+ D +TM
Sbjct: 426 YARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTM 485

Query: 222 VAVLSACSHSGLVDEGQMMFAKMINVYRINPRIEHFSCMVDLFGNAGLLRKAVQIITEMP 401
           VAVLSACSHSGLV EG ++F KM  +Y I P +EHFSCMVDLFG AGLL KA ++IT MP
Sbjct: 486 VAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMP 545

Query: 402 YRPSHAMLATLVSASRIYGNTTIMDWAT-KMLEVRPED*IHHLLIAKL 542
           YRP+ AM ATLV A RI+GNT I +WA  K+LE++PE+  +++LIA +
Sbjct: 546 YRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANM 593