BLASTX nr result
ID: Coptis25_contig00023824
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00023824
(331 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI19925.3| unnamed protein product [Vitis vinifera] 131 5e-29
ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat... 131 5e-29
emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera] 131 5e-29
ref|XP_002302206.1| predicted protein [Populus trichocarpa] gi|2... 115 4e-24
ref|NP_177827.1| pentatricopeptide repeat-containing protein [Ar... 109 3e-22
>emb|CBI19925.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 131 bits (330), Expect = 5e-29
Identities = 62/110 (56%), Positives = 87/110 (79%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 DLDSASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDC-SIPCIGLWNSMIAGYVA 179
D+DSA+ VL+ +++PD FSLSALISGYA CG++ +AR++F S C+ LWNSMI+GYVA
Sbjct: 259 DIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVA 318
Query: 180 NNQVSQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYAY 329
NN+ +AL+LF+ M+ +G+Q D STFAS+LSAC++LG + G QVH + Y
Sbjct: 319 NNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVY 368
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +3
Query: 48 DNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL-WNSMIAGYVANNQVSQALDLFSRMQ 224
D ++L+ Y KCG + RKLFD + + WNSM+ GY N +AL++F +M+
Sbjct: 486 DQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMR 545
Query: 225 NRGIQADLSTFASILSACASLGDLGNGKQVHCYAY 329
+ G+Q TF +LSAC G + G++ + Y
Sbjct: 546 SVGVQPTDITFVGVLSACDHCGLVEEGRKCYFIKY 580
Score = 62.8 bits (151), Expect = 3e-08
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +3
Query: 24 VLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL-WNSMIAGYVANNQVSQA 200
+ ++ D FS + +ISG+AK G L AR+LF+ G+ WNSMI GY N + +A
Sbjct: 131 LFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEA 190
Query: 201 LDLFSRMQNRGIQ---ADLSTFASILSACASLGDLGNGKQVH 317
+ LF + ++ D A+++ AC +LG L GKQ+H
Sbjct: 191 VGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIH 232
Score = 60.1 bits (144), Expect = 2e-07
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Frame = +3
Query: 63 SALISGYAKCGKLVEARKLF-----------DCSIPCIGLWNSMIAGYVANNQVSQALDL 209
SAL+ Y+KC + +A KLF + I + WNSMI G+ N +ALDL
Sbjct: 380 SALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVLISWNSMIVGFSQNACPIEALDL 439
Query: 210 FSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYA 326
F M G++ D + A ++SACAS+ L G+Q+ A
Sbjct: 440 FCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARA 478
>ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 131 bits (330), Expect = 5e-29
Identities = 62/110 (56%), Positives = 87/110 (79%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 DLDSASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDC-SIPCIGLWNSMIAGYVA 179
D+DSA+ VL+ +++PD FSLSALISGYA CG++ +AR++F S C+ LWNSMI+GYVA
Sbjct: 223 DIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVA 282
Query: 180 NNQVSQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYAY 329
NN+ +AL+LF+ M+ +G+Q D STFAS+LSAC++LG + G QVH + Y
Sbjct: 283 NNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVY 332
Score = 78.2 bits (191), Expect = 7e-13
Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Frame = +3
Query: 9 DSASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL--WNSMIAGYVAN 182
D A ++ S LQ D L+++I+ Y+ CG++ +AR++FD ++P L WNSMI G+ N
Sbjct: 357 DDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFD-TMPSKSLISWNSMIVGFSQN 415
Query: 183 NQVSQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYA 326
+ALDLF M G++ D + A ++SACAS+ L G+Q+ A
Sbjct: 416 ACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARA 463
Score = 62.8 bits (151), Expect = 3e-08
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +3
Query: 24 VLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL-WNSMIAGYVANNQVSQA 200
+ ++ D FS + +ISG+AK G L AR+LF+ G+ WNSMI GY N + +A
Sbjct: 95 LFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEA 154
Query: 201 LDLFSRMQNRGIQ---ADLSTFASILSACASLGDLGNGKQVH 317
+ LF + ++ D A+++ AC +LG L GKQ+H
Sbjct: 155 VGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIH 196
Score = 61.6 bits (148), Expect = 6e-08
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 48 DNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL-WNSMIAGYVANNQVSQALDLFSRMQ 224
D ++L+ Y KCG + RKLFD + + WNSM+ GY N +AL++F +M+
Sbjct: 471 DQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMR 530
Query: 225 NRGIQADLSTFASILSACASLGDLGNGKQ 311
+ G+Q TF +LSAC G + G++
Sbjct: 531 SVGVQPTDITFVGVLSACDHCGLVEEGRK 559
>emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 131 bits (330), Expect = 5e-29
Identities = 62/110 (56%), Positives = 87/110 (79%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 DLDSASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDC-SIPCIGLWNSMIAGYVA 179
D+DSA+ VL+ +++PD FSLSALISGYA CG++ +AR++F S C+ LWNSMI+GYVA
Sbjct: 223 DIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVA 282
Query: 180 NNQVSQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYAY 329
NN+ +AL+LF+ M+ +G+Q D STFAS+LSAC++LG + G QVH + Y
Sbjct: 283 NNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVY 332
Score = 78.2 bits (191), Expect = 7e-13
Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Frame = +3
Query: 9 DSASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL--WNSMIAGYVAN 182
D A ++ S LQ D L+++I+ Y+ CG++ +AR++FD ++P L WNSMI G+ N
Sbjct: 357 DDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFD-TMPSKSLISWNSMIVGFSQN 415
Query: 183 NQVSQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYA 326
+ALDLF M G++ D + A ++SACAS+ L G+Q+ A
Sbjct: 416 ACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARA 463
Score = 62.8 bits (151), Expect = 3e-08
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +3
Query: 24 VLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL-WNSMIAGYVANNQVSQA 200
+ ++ D FS + +ISG+AK G L AR+LF+ G+ WNSMI GY N + +A
Sbjct: 95 LFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEA 154
Query: 201 LDLFSRMQNRGIQ---ADLSTFASILSACASLGDLGNGKQVH 317
+ LF + ++ D A+++ AC +LG L GKQ+H
Sbjct: 155 VGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIH 196
Score = 61.6 bits (148), Expect = 6e-08
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +3
Query: 48 DNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL-WNSMIAGYVANNQVSQALDLFSRMQ 224
D ++L+ Y KCG + RKLFD + + WNSM+ GY N +AL++F +M+
Sbjct: 471 DQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMR 530
Query: 225 NRGIQADLSTFASILSACASLGDLGNGKQ 311
+ G+Q TF +LSAC G + G++
Sbjct: 531 SVGVQPTDITFVGVLSACDHCGLVEEGRK 559
>ref|XP_002302206.1| predicted protein [Populus trichocarpa] gi|222843932|gb|EEE81479.1|
predicted protein [Populus trichocarpa]
Length = 681
Score = 115 bits (288), Expect = 4e-24
Identities = 58/109 (53%), Positives = 83/109 (76%), Gaps = 1/109 (0%)
Frame = +3
Query: 3 DLDSASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLF-DCSIPCIGLWNSMIAGYVA 179
DLDSA VL+T+++PD+FSLSALI+GYA G++ +AR+ F S C+ +WNS+I+GYV
Sbjct: 222 DLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVT 281
Query: 180 NNQVSQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYA 326
NN+ +A LF+ MQ +G++ D ST A+ILSAC+SL + +GKQ+H YA
Sbjct: 282 NNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSLCNSQHGKQMHAYA 330
Score = 64.7 bits (156), Expect = 7e-09
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +3
Query: 6 LDSASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL--WNSMIAGYVA 179
L+ A ++ S L+ D L+++I+ Y+ GK+ +A+++F+ ++P L WNSMI G
Sbjct: 355 LNDACKLFSELKTYDTILLNSMITVYSNSGKIEDAKQIFN-TMPSKSLISWNSMIVGLSQ 413
Query: 180 NNQVSQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYA 326
N +ALDLF M ++ + S++SACAS+ L G+Q+ A
Sbjct: 414 NGCPVEALDLFCMMNKLDLRMNRFNLTSVISACASISSLELGEQIFARA 462
Score = 60.1 bits (144), Expect = 2e-07
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +3
Query: 48 DNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL-WNSMIAGYVANNQVSQALDLFSRMQ 224
D ++L+ Y KCG + RKLFD + + WNSM+ GY N +AL LF+ M+
Sbjct: 470 DEVISTSLVDFYCKCGFIEIGRKLFDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMR 529
Query: 225 NRGIQADLSTFASILSACASLGDLGNG 305
+ G++ TF +LSAC G + G
Sbjct: 530 HAGVRPTEITFTGVLSACDHCGLVKEG 556
Score = 58.2 bits (139), Expect = 7e-07
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Frame = +3
Query: 21 RVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDCSIPCIG-LWNSMIAGYVANNQVSQ 197
R+ + +++S + + SG+AK G++ AR+LF+ G +WNSMI Y N +
Sbjct: 93 RLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNSMIHSYARNGSPRE 152
Query: 198 ALDLFSRMQNRGIQ---ADLSTFASILSACASLGDLGNGKQVH 317
A+ LF + + D A+++ AC LG++ GKQ+H
Sbjct: 153 AVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCGKQIH 195
>ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098688|sp|O49287.1|PP127_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At1g77010, mitochondrial; Flags: Precursor
gi|2829915|gb|AAC00623.1| Hypothetical protein
[Arabidopsis thaliana] gi|332197804|gb|AEE35925.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 695
Score = 109 bits (272), Expect = 3e-22
Identities = 57/109 (52%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Frame = +3
Query: 3 DLDSASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFD-CSIPCIGLWNSMIAGYVA 179
DL AS +L +++PD+ SLSALISGYA CG++ E+R LFD S C+ LWNSMI+GY+A
Sbjct: 237 DLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIA 296
Query: 180 NNQVSQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYA 326
NN +AL LF+ M+N + D T A++++AC LG L GKQ+HC+A
Sbjct: 297 NNMKMEALVLFNEMRNE-TREDSRTLAAVINACIGLGFLETGKQMHCHA 344
Score = 63.5 bits (153), Expect = 2e-08
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +3
Query: 48 DNFSLSALISGYAKCGKLVEARKLFDCSIPCIGL-WNSMIAGYVANNQVSQALDLFSRMQ 224
D S+LI Y KCG + R++FD + + WNSMI+GY N Q +A+DLF +M
Sbjct: 484 DQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMS 543
Query: 225 NRGIQADLSTFASILSACASLGDLGNGKQV 314
GI+ TF +L+AC G + G+++
Sbjct: 544 VAGIRPTQITFMVVLTACNYCGLVEEGRKL 573
Score = 62.0 bits (149), Expect = 5e-08
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Frame = +3
Query: 21 RVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFDCSIP--CIGLWNSMIAGYVANNQVS 194
R + + D +S + ++SG+AK G+L AR+LF+ ++P + NS++ GY+ N
Sbjct: 114 RFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFN-AMPEKDVVTLNSLLHGYILNGYAE 172
Query: 195 QALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVH 317
+AL LF + AD T ++L ACA L L GKQ+H
Sbjct: 173 EALRLFKEL---NFSADAITLTTVLKACAELEALKCGKQIH 210
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +3
Query: 15 ASRVLSTLQKPDNFSLSALISGYAKCGKLVEARKLFD-CSIPCIGLWNSMIAGYVANNQV 191
A ++ S ++ D L+++I Y CG++ +A+++F+ + WNSM G+ N
Sbjct: 372 ACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCT 431
Query: 192 SQALDLFSRMQNRGIQADLSTFASILSACASLGDLGNGKQVHCYA 326
+ L+ F +M + D + +S++SACAS+ L G+QV A
Sbjct: 432 VETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARA 476