BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023803
         (504 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16054.3| unnamed protein product [Vitis vinifera]              175   4e-42
ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containi...   175   4e-42
ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|2...   166   1e-39
ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containi...   166   2e-39
ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containi...   165   4e-39

>emb|CBI16054.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  175 bits (443), Expect = 4e-42
 Identities = 94/173 (54%), Positives = 112/173 (64%), Gaps = 8/173 (4%)
 Frame = -1

Query: 501 HKPTTLYPTK-----M*KRIANTSIDKNNNNNRLIQFLCKRNNLKQALKILSNEPNPTQQ 337
           HKPT + P       +       S   +NNNN LIQ LCK+ NL QAL++LS EPNPTQ 
Sbjct: 20  HKPTAISPKPQCCLALRPSTTTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQH 79

Query: 336 TYEHLILSCT---SLSDGVLVHHHVIDNGFDQDSFLATKLINMYTEFDSIDNARYVFDKI 166
           TYE LILSCT   SL  G+ +H H+I +G DQD FLATKLINMY+E DSIDNAR VFDK 
Sbjct: 80  TYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKT 139

Query: 165 NDKTVFVWNAIXXXXXXXXXXXXXXXXXRKMNEMGVESDRFTYTYVLKACVVA 7
             +T++VWNA+                 R+MN +GV SDRFTYTYVLKACV +
Sbjct: 140 RKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVAS 192


>ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  175 bits (443), Expect = 4e-42
 Identities = 94/173 (54%), Positives = 112/173 (64%), Gaps = 8/173 (4%)
 Frame = -1

Query: 501 HKPTTLYPTK-----M*KRIANTSIDKNNNNNRLIQFLCKRNNLKQALKILSNEPNPTQQ 337
           HKPT + P       +       S   +NNNN LIQ LCK+ NL QAL++LS EPNPTQ 
Sbjct: 20  HKPTAISPKPQCCLALRPSTTTRSNGDSNNNNPLIQSLCKQGNLNQALQVLSQEPNPTQH 79

Query: 336 TYEHLILSCT---SLSDGVLVHHHVIDNGFDQDSFLATKLINMYTEFDSIDNARYVFDKI 166
           TYE LILSCT   SL  G+ +H H+I +G DQD FLATKLINMY+E DSIDNAR VFDK 
Sbjct: 80  TYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKT 139

Query: 165 NDKTVFVWNAIXXXXXXXXXXXXXXXXXRKMNEMGVESDRFTYTYVLKACVVA 7
             +T++VWNA+                 R+MN +GV SDRFTYTYVLKACV +
Sbjct: 140 RKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVAS 192


>ref|XP_002313416.1| predicted protein [Populus trichocarpa] gi|222849824|gb|EEE87371.1|
           predicted protein [Populus trichocarpa]
          Length = 650

 Score =  166 bits (421), Expect = 1e-39
 Identities = 85/144 (59%), Positives = 104/144 (72%), Gaps = 3/144 (2%)
 Frame = -1

Query: 429 NNNRLIQFLCKRNNLKQALKILSNEPNPTQQTYEHLILSCT---SLSDGVLVHHHVIDNG 259
           +NN+LIQ LCK+ NL QAL++LS EPNP Q TYE LILSCT   SL D   VH H+++NG
Sbjct: 41  DNNKLIQSLCKQGNLTQALELLSLEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENG 100

Query: 258 FDQDSFLATKLINMYTEFDSIDNARYVFDKINDKTVFVWNAIXXXXXXXXXXXXXXXXXR 79
           FDQD FLATKLINMY+ FDSIDNAR VFDK  ++T++V+NA+                 R
Sbjct: 101 FDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYR 160

Query: 78  KMNEMGVESDRFTYTYVLKACVVA 7
           +MN +G+ SDRFTYTYVLKACV +
Sbjct: 161 RMNSIGIPSDRFTYTYVLKACVAS 184


>ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449474033|ref|XP_004154055.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449510921|ref|XP_004163811.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  166 bits (420), Expect = 2e-39
 Identities = 86/152 (56%), Positives = 104/152 (68%), Gaps = 3/152 (1%)
 Frame = -1

Query: 453 NTSIDKNNNNNRLIQFLCKRNNLKQALKILSNEPNPTQQTYEHLILSCT---SLSDGVLV 283
           N S   N+NNN LIQ LCK+ NLKQAL +LS+E NPTQQT E LILS     SLSD + V
Sbjct: 32  NPSTPPNSNNNHLIQSLCKQGNLKQALYLLSHESNPTQQTCELLILSAARRNSLSDALDV 91

Query: 282 HHHVIDNGFDQDSFLATKLINMYTEFDSIDNARYVFDKINDKTVFVWNAIXXXXXXXXXX 103
           H  ++D GFDQD FLATKLINM++E D++DNAR VFDK   +T++VWNA+          
Sbjct: 92  HQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRG 151

Query: 102 XXXXXXXRKMNEMGVESDRFTYTYVLKACVVA 7
                   +MN MGV SDRFTYTY+LKACV +
Sbjct: 152 NDVLELYPRMNMMGVSSDRFTYTYLLKACVAS 183


>ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  165 bits (417), Expect = 4e-39
 Identities = 84/153 (54%), Positives = 104/153 (67%), Gaps = 3/153 (1%)
 Frame = -1

Query: 456 ANTSIDKNNNNNRLIQFLCKRNNLKQALKILSNEPNPTQQTYEHLILSCT---SLSDGVL 286
           AN   D   NNN+LIQ LCK  NLKQA+ +L  EPNPTQ+T+EHLI SC    SLSDG+ 
Sbjct: 40  ANLMNDIKGNNNQLIQSLCKGGNLKQAIHLLCCEPNPTQRTFEHLICSCAQQNSLSDGLD 99

Query: 285 VHHHVIDNGFDQDSFLATKLINMYTEFDSIDNARYVFDKINDKTVFVWNAIXXXXXXXXX 106
           VH  ++ +GFDQD FLATKLINMY E  SID AR VFD+  ++T++VWNA+         
Sbjct: 100 VHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAMVGC 159

Query: 105 XXXXXXXXRKMNEMGVESDRFTYTYVLKACVVA 7
                    +MN +G+ SDRFTYT+VLKACVV+
Sbjct: 160 GKELLDLYVQMNWIGIPSDRFTYTFVLKACVVS 192