BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023777
         (1388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]   359   8e-97
ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2...   358   2e-96
ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ...   350   5e-94
ref|XP_002515077.1| pentatricopeptide repeat-containing protein,...   339   9e-91
ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi...   328   2e-87

>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
          Length = 422

 Score =  359 bits (922), Expect = 8e-97
 Identities = 174/237 (73%), Positives = 195/237 (82%)
 Frame = -2

Query: 1384 PDTLSYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKL 1205
            PD  SYRILMQGLCRKSQVN AV LLEDMLNKGYVPD LSYTTLLNSLCRKKKL+EAYKL
Sbjct: 186  PDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKL 245

Query: 1204 LCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCS 1025
            LCRMKVKGCNPDIVHYNTVILGFCRE R  DA KV+EDMP NGC PNL+SY TLV+GLC 
Sbjct: 246  LCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCD 305

Query: 1024 QGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTET 845
            QG+ DEAK Y+EEM+ KGF PHFS FH L+ GFCNVG++EEAC VL EMLRHGE  HTET
Sbjct: 306  QGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTET 365

Query: 844  WVTIVQRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQAKSWKA 674
            WV I+ RIC   + + ME I    LK+EIT + ++V+ G GLEE++IRKV+ KS KA
Sbjct: 366  WVAIIPRICEVDKLVRMENIFDEXLKLEITPNTRLVEAGIGLEEYVIRKVRDKSRKA 422



 Score =  112 bits (279), Expect = 3e-22
 Identities = 61/190 (32%), Positives = 101/190 (53%)
 Frame = -2

Query: 1339 KSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVH 1160
            ++ +  A  L +     G  PDT SY  L+++ C    L  AY L  +M  +   PD+  
Sbjct: 131  RNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVES 190

Query: 1159 YNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMI 980
            Y  ++ G CR+ +   A+ ++EDM   G +P+ +SY TL+N LC +  L EA   L  M 
Sbjct: 191  YRILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMK 250

Query: 979  LKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESM 800
            +KG  P    ++ ++ GFC  GR  +AC VLE+M  +G  P+  ++ T+V  +C +G   
Sbjct: 251  VKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYD 310

Query: 799  EMERILQNVL 770
            E +  ++ +L
Sbjct: 311  EAKNYVEEML 320


>ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1|
            predicted protein [Populus trichocarpa]
          Length = 475

 Score =  358 bits (919), Expect = 2e-96
 Identities = 169/237 (71%), Positives = 197/237 (83%)
 Frame = -2

Query: 1387 VPDTLSYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYK 1208
            +PD  SYRILMQ LCRKSQVN AV LLEDMLNKGYVPD LSYTTLLNSLCRKKKLREAYK
Sbjct: 238  MPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYK 297

Query: 1207 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 1028
            LLCRMKVKGCNPDI+HYNTVILGFCRE RA DA KV+EDM  NGC+PNLVSYRTLV GLC
Sbjct: 298  LLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLC 357

Query: 1027 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTE 848
             QGM DEAK++LEEM++KGF PHF+  + L+KGFCNVG++EEAC V+EE+L+HGE PHTE
Sbjct: 358  DQGMFDEAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTE 417

Query: 847  TWVTIVQRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQAKSWK 677
            TWV +V RIC   +   +  IL  V K+E+  D +IV+ G GLEE+LI++ Q K+W+
Sbjct: 418  TWVMMVSRICEVDDLQRIGEILDKVKKVELKGDTRIVEAGIGLEEYLIKRTQQKAWR 474



 Score =  108 bits (270), Expect = 3e-21
 Identities = 58/190 (30%), Positives = 101/190 (53%)
 Frame = -2

Query: 1339 KSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVH 1160
            ++ +  A  L +D       P+T SY  L+ + C   ++  AY L  +M  +   PD+  
Sbjct: 184  QNYIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVES 243

Query: 1159 YNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMI 980
            Y  ++   CR+ +   A+ ++EDM   G +P+ +SY TL+N LC +  L EA   L  M 
Sbjct: 244  YRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMK 303

Query: 979  LKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESM 800
            +KG  P    ++ ++ GFC  GR  +AC VLE+M  +G +P+  ++ T+V  +C +G   
Sbjct: 304  VKGCNPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFD 363

Query: 799  EMERILQNVL 770
            E +  L+ ++
Sbjct: 364  EAKSHLEEMM 373



 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 1/198 (0%)
 Frame = -2

Query: 1372 SYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRM 1193
            SY IL+  L R    +    LL D+ +K Y      ++ ++N         +A K+   +
Sbjct: 102  SYLILILKLGRAKYFSFIDDLLTDLKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTI 161

Query: 1192 KVKGCNPDIVHYNTVI-LGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGM 1016
                CNP   H N ++ +    +     A  + +D       PN  SY  L+   C  G 
Sbjct: 162  LKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQ 221

Query: 1015 LDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVT 836
            +  A +   +M  +  +P   ++  L++  C   ++  A  +LE+ML  G VP   ++ T
Sbjct: 222  ISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTT 281

Query: 835  IVQRICCEGESMEMERIL 782
            ++  +C + +  E  ++L
Sbjct: 282  LLNSLCRKKKLREAYKLL 299


>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical
            [Medicago truncatula] gi|355501623|gb|AES82826.1|
            Pentatricopeptide repeat-containing protein [Medicago
            truncatula]
          Length = 451

 Score =  350 bits (898), Expect = 5e-94
 Identities = 169/235 (71%), Positives = 194/235 (82%)
 Frame = -2

Query: 1387 VPDTLSYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYK 1208
            VPD  SYRILMQ LCRKSQVN AV L EDMLNKG+VPD+ +YTTLLNSLCRKKKLREAYK
Sbjct: 214  VPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYK 273

Query: 1207 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 1028
            LLCRMKVKGCNPDIVHYNTVILGFCRE RA DA KVI+DM  NGC+PNLVSYRTLVNGLC
Sbjct: 274  LLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLC 333

Query: 1027 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTE 848
              GMLDEA  Y+EEM+ KGF PHF+  H LVKGFCNVGR+EEAC VL + L H E PH +
Sbjct: 334  HLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGFCNVGRIEEACGVLTKSLEHREAPHKD 393

Query: 847  TWVTIVQRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQAKS 683
            TW+ IV +IC   + ++++ +L+ VLKIEI  D +IVD G GLE++LIRK++AKS
Sbjct: 394  TWMIIVPQICEVDDGVKIDGVLEEVLKIEIKGDTRIVDAGIGLEDYLIRKIRAKS 448



 Score =  108 bits (271), Expect = 3e-21
 Identities = 61/199 (30%), Positives = 102/199 (51%)
 Frame = -2

Query: 1366 RILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKV 1187
            RIL   +  ++ +  A  L +D    G  PDT SY  L+ + C    +  AY L  +M  
Sbjct: 151  RILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFK 210

Query: 1186 KGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDE 1007
            +   PDI  Y  ++   CR+ +   A+ + EDM   G +P+  +Y TL+N LC +  L E
Sbjct: 211  RDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLRE 270

Query: 1006 AKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQ 827
            A   L  M +KG  P    ++ ++ GFC  GR  +AC V+++M  +G +P+  ++ T+V 
Sbjct: 271  AYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVN 330

Query: 826  RICCEGESMEMERILQNVL 770
             +C  G   E  + ++ +L
Sbjct: 331  GLCHLGMLDEATKYVEEML 349


>ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545557|gb|EEF47061.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 262

 Score =  339 bits (870), Expect = 9e-91
 Identities = 165/238 (69%), Positives = 193/238 (81%)
 Frame = -2

Query: 1387 VPDTLSYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYK 1208
            +PD  SYRILMQGLCR+SQVN AV LLEDMLNKG+VPD L+YTTLLNSLCRKKKLREAYK
Sbjct: 26   LPDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGFVPDCLTYTTLLNSLCRKKKLREAYK 85

Query: 1207 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 1028
            LLCRMKVKGCNPDIVHYNT+I GFCRE RA DA KV+ DM  NGC+PNLVSYRTLV G+C
Sbjct: 86   LLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGIC 145

Query: 1027 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTE 848
             QGM DEAK+YLEEMILKGF PHFS  H LVKGFC VG++EEAC V+E +L+HGEVPH +
Sbjct: 146  DQGMFDEAKSYLEEMILKGFSPHFSVSHALVKGFCIVGKIEEACGVVEVLLKHGEVPHAD 205

Query: 847  TWVTIVQRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQAKSWKA 674
            TW+ I+ RIC   +   + + L   + +EI  D +IV+ G GLE++LI+K Q K W+A
Sbjct: 206  TWIIILPRICEVDDLEGIRQSLDKAMMVEIMGDTRIVEAGIGLEDYLIKKAQPK-WRA 262


>ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
            mitochondrial-like [Cucumis sativus]
            gi|449499186|ref|XP_004160743.1| PREDICTED:
            pentatricopeptide repeat-containing protein At4g01400,
            mitochondrial-like [Cucumis sativus]
          Length = 482

 Score =  328 bits (842), Expect = 2e-87
 Identities = 153/233 (65%), Positives = 186/233 (79%)
 Frame = -2

Query: 1387 VPDTLSYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYK 1208
            +PD  +YR LMQGLCRK+QVN AV LLEDMLNKGY+PDTLSY TLLNSLCRKKKLREAYK
Sbjct: 244  IPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYK 303

Query: 1207 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 1028
            LLCRMKVKGCNPDI HYNTVI+GFCRE RA DA K++EDM  NGC+PNLVSY +L NGLC
Sbjct: 304  LLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363

Query: 1027 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTE 848
             QGM + AK Y+EEM LKGF PHFS  H LVKGF ++GR+ E+C VLE+ML+ G+ PH++
Sbjct: 364  DQGMFELAKGYVEEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAPHSD 423

Query: 847  TWVTIVQRICCEGESMEMERILQNVLKIEITRDAKIVDLGQGLEEFLIRKVQA 689
            TW  I+  IC   ++ +   + + +LK ++ RD +IV+ G GL E+LIRK+QA
Sbjct: 424  TWEIIISGICEVEDTAKFCEVWEKILKKDVRRDTRIVEAGTGLGEYLIRKLQA 476



 Score =  114 bits (285), Expect = 6e-23
 Identities = 59/186 (31%), Positives = 103/186 (55%)
 Frame = -2

Query: 1366 RILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKV 1187
            RIL   +  ++ +  A  L ++  + G +P+T SY  L+ + C    +  AY L  +M  
Sbjct: 181  RILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFE 240

Query: 1186 KGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDE 1007
            +   PD+  Y T++ G CR+ +   A+ ++EDM   G IP+ +SY TL+N LC +  L E
Sbjct: 241  RNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLRE 300

Query: 1006 AKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQ 827
            A   L  M +KG  P  + ++ ++ GFC  GR  +AC +LE+M  +G +P+  ++ ++  
Sbjct: 301  AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTN 360

Query: 826  RICCEG 809
             +C +G
Sbjct: 361  GLCDQG 366



 Score = 82.8 bits (203), Expect = 2e-13
 Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 1/205 (0%)
 Frame = -2

Query: 1384 PDTLSYRILMQGLCRKSQVNTAVSLLEDMLNKGYVPDTLSYTTLLNSLCRKKK-LREAYK 1208
            P   SY I + G       + A+ +   M++ G  P +     +L  L   +  +R A+ 
Sbjct: 141  PTAFSYIIKIYG--EADLPDKALKVFYTMIDFGCTPSSKQLNRILEILVSHRNFIRPAFD 198

Query: 1207 LLCRMKVKGCNPDIVHYNTVILGFCRERRAGDAIKVIEDMPENGCIPNLVSYRTLVNGLC 1028
            L    +  G  P+   YN +I  FC       A  +   M E   IP++ +YRTL+ GLC
Sbjct: 199  LFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLC 258

Query: 1027 SQGMLDEAKAYLEEMILKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTE 848
             +  ++ A   LE+M+ KG++P   ++  L+   C   ++ EA  +L  M   G  P   
Sbjct: 259  RKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDIA 318

Query: 847  TWVTIVQRICCEGESMEMERILQNV 773
             + T++   C EG +++  +IL+++
Sbjct: 319  HYNTVIMGFCREGRALDACKILEDM 343