BLASTX nr result
ID: Coptis25_contig00023690
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00023690
(1122 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arab... 43 5e-07
ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arab... 44 9e-07
ref|XP_003606393.1| YrdC domain-containing protein [Medicago tru... 41 1e-06
ref|NP_974970.1| DHBP synthase RibB-like alpha/beta domain-conta... 43 2e-06
ref|NP_568924.1| DHBP synthase RibB-like alpha/beta domain-conta... 43 3e-06
>ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp.
lyrata] gi|297325130|gb|EFH55550.1| hypothetical protein
ARALYDRAFT_482017 [Arabidopsis lyrata subsp. lyrata]
Length = 263
Score = 43.1 bits (100), Expect(2) = 5e-07
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Frame = +1
Query: 358 MSISSKAVEK*PVFNFCFTCSLSSRAIPSLRF---ALH*NKRYFGGFLCKKMLWESRRCD 528
M++S++ EK P + + + + LRF A H + +G L KKM+W R +
Sbjct: 1 MNLSTRLAEKLPGILPAPSSPILRKGVSELRFFSIANHSRRLRWG--LQKKMVWSLERAE 58
Query: 529 ISVVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXXXXXXXXVNR 708
VV + + P E +A VP DTLYG VNR
Sbjct: 59 TCVVSNSCL-----VHPATEAYAQEAIEAIKSDKVIAVPTDTLYGFACDACSLEA--VNR 111
Query: 709 IYEIKG 726
IYEIKG
Sbjct: 112 IYEIKG 117
Score = 37.7 bits (86), Expect(2) = 5e-07
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Frame = +2
Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
VG VFDI+ A T LP GL D+LLPGP+T+V+
Sbjct: 128 VGDVFDIKRVATTNHLPHGLLDSLLPGPVTLVL 160
>ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp.
lyrata] gi|297310528|gb|EFH40952.1| hypothetical protein
ARALYDRAFT_358267 [Arabidopsis lyrata subsp. lyrata]
Length = 284
Score = 43.9 bits (102), Expect(2) = 9e-07
Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = +1
Query: 358 MSISSKAVEK*PVFNFCFTCSLSSRAIPSLR-FALH*NKRYFGGFLCKKMLWESRRCDIS 534
M++S++ EK P + L + I LR F++ + R L KKM+W R +
Sbjct: 1 MNLSTRLAEKLPGILPAPSSPLLRKGISELRCFSIANHSRRLRWGLQKKMVWSLERAETC 60
Query: 535 VVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXXXXXXXXVNRIY 714
VV + + P E +A VP DTLYG VNRIY
Sbjct: 61 VVSNSCL-----VHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEA--VNRIY 113
Query: 715 EIKG 726
EIKG
Sbjct: 114 EIKG 117
Score = 36.2 bits (82), Expect(2) = 9e-07
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +2
Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
VG V DI+ A T LP GL D+LLPGP+T+V+
Sbjct: 128 VGDVLDIKRVATTNHLPHGLLDSLLPGPVTIVL 160
>ref|XP_003606393.1| YrdC domain-containing protein [Medicago truncatula]
gi|355507448|gb|AES88590.1| YrdC domain-containing
protein [Medicago truncatula]
Length = 462
Score = 40.8 bits (94), Expect(2) = 1e-06
Identities = 26/75 (34%), Positives = 32/75 (42%)
Frame = +1
Query: 502 MLWESRRCDISVVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXX 681
M W RCD+ + +K GV+ P + +A VP DTLYG
Sbjct: 1 MAWSMERCDLGLDVKT-----GVVHPATDAYAAEAVETLKAGKVIAVPTDTLYG--FACD 53
Query: 682 XXXXXXVNRIYEIKG 726
VNRIYEIKG
Sbjct: 54 ACSLEAVNRIYEIKG 68
Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Frame = +2
Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
VG V DI FA+T LP GL D+LLPGP+TVV+
Sbjct: 79 VGDVSDINRFALTDHLPHGLLDSLLPGPVTVVL 111
>ref|NP_974970.1| DHBP synthase RibB-like alpha/beta domain-containing protein
[Arabidopsis thaliana] gi|332009969|gb|AED97352.1| DHBP
synthase RibB-like alpha/beta domain-containing protein
[Arabidopsis thaliana]
Length = 288
Score = 43.1 bits (100), Expect(2) = 2e-06
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = +1
Query: 358 MSISSKAVEK*PVFNFCFTCSLSSRAIPSLR-FALH*NKRYFGGFLCKKMLWESRRCDIS 534
M++S++ EK P + L + + LR F++ R L KKM+W R +
Sbjct: 1 MNLSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETC 60
Query: 535 VVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXXXXXXXXVNRIY 714
VV K + + P E +A VP DTLYG V+RIY
Sbjct: 61 VVSKSCL-----VHPATEAYAQEAIEAIKSEKVIAVPTDTLYG--FACDACSLEAVSRIY 113
Query: 715 EIKG 726
EIKG
Sbjct: 114 EIKG 117
Score = 35.4 bits (80), Expect(2) = 2e-06
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +2
Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
VG V DI+ A T LP GL D+LLPGP+T+V+
Sbjct: 128 VGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVL 160
>ref|NP_568924.1| DHBP synthase RibB-like alpha/beta domain-containing protein
[Arabidopsis thaliana]
gi|14190379|gb|AAK55670.1|AF378867_1 AT5g60590/muf9_240
[Arabidopsis thaliana] gi|15215871|gb|AAK91479.1|
AT5g60590/muf9_240 [Arabidopsis thaliana]
gi|332009968|gb|AED97351.1| DHBP synthase RibB-like
alpha/beta domain-containing protein [Arabidopsis
thaliana]
Length = 164
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = +1
Query: 358 MSISSKAVEK*PVFNFCFTCSLSSRAIPSLR-FALH*NKRYFGGFLCKKMLWESRRCDIS 534
M++S++ EK P + L + + LR F++ R L KKM+W R +
Sbjct: 1 MNLSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETC 60
Query: 535 VVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXXXXXXXXVNRIY 714
VV K + + P E +A VP DTLYG V+RIY
Sbjct: 61 VVSKSCL-----VHPATEAYAQEAIEAIKSEKVIAVPTDTLYG--FACDACSLEAVSRIY 113
Query: 715 EIKG 726
EIKG
Sbjct: 114 EIKG 117
Score = 35.4 bits (80), Expect(2) = 3e-06
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +2
Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
VG V DI+ A T LP GL D+LLPGP+T+V+
Sbjct: 128 VGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVL 160