BLASTX nr result

ID: Coptis25_contig00023690 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023690
         (1122 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arab...    43   5e-07
ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arab...    44   9e-07
ref|XP_003606393.1| YrdC domain-containing protein [Medicago tru...    41   1e-06
ref|NP_974970.1| DHBP synthase RibB-like alpha/beta domain-conta...    43   2e-06
ref|NP_568924.1| DHBP synthase RibB-like alpha/beta domain-conta...    43   3e-06

>ref|XP_002879291.1| hypothetical protein ARALYDRAFT_482017 [Arabidopsis lyrata subsp.
           lyrata] gi|297325130|gb|EFH55550.1| hypothetical protein
           ARALYDRAFT_482017 [Arabidopsis lyrata subsp. lyrata]
          Length = 263

 Score = 43.1 bits (100), Expect(2) = 5e-07
 Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
 Frame = +1

Query: 358 MSISSKAVEK*PVFNFCFTCSLSSRAIPSLRF---ALH*NKRYFGGFLCKKMLWESRRCD 528
           M++S++  EK P      +  +  + +  LRF   A H  +  +G  L KKM+W   R +
Sbjct: 1   MNLSTRLAEKLPGILPAPSSPILRKGVSELRFFSIANHSRRLRWG--LQKKMVWSLERAE 58

Query: 529 ISVVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXXXXXXXXVNR 708
             VV    +     + P  E +A              VP DTLYG            VNR
Sbjct: 59  TCVVSNSCL-----VHPATEAYAQEAIEAIKSDKVIAVPTDTLYGFACDACSLEA--VNR 111

Query: 709 IYEIKG 726
           IYEIKG
Sbjct: 112 IYEIKG 117



 Score = 37.7 bits (86), Expect(2) = 5e-07
 Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
 Frame = +2

Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
           VG VFDI+  A T  LP GL D+LLPGP+T+V+
Sbjct: 128 VGDVFDIKRVATTNHLPHGLLDSLLPGPVTLVL 160


>ref|XP_002864693.1| hypothetical protein ARALYDRAFT_358267 [Arabidopsis lyrata subsp.
           lyrata] gi|297310528|gb|EFH40952.1| hypothetical protein
           ARALYDRAFT_358267 [Arabidopsis lyrata subsp. lyrata]
          Length = 284

 Score = 43.9 bits (102), Expect(2) = 9e-07
 Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
 Frame = +1

Query: 358 MSISSKAVEK*PVFNFCFTCSLSSRAIPSLR-FALH*NKRYFGGFLCKKMLWESRRCDIS 534
           M++S++  EK P      +  L  + I  LR F++  + R     L KKM+W   R +  
Sbjct: 1   MNLSTRLAEKLPGILPAPSSPLLRKGISELRCFSIANHSRRLRWGLQKKMVWSLERAETC 60

Query: 535 VVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXXXXXXXXVNRIY 714
           VV    +     + P  E +A              VP DTLYG            VNRIY
Sbjct: 61  VVSNSCL-----VHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDACSLEA--VNRIY 113

Query: 715 EIKG 726
           EIKG
Sbjct: 114 EIKG 117



 Score = 36.2 bits (82), Expect(2) = 9e-07
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +2

Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
           VG V DI+  A T  LP GL D+LLPGP+T+V+
Sbjct: 128 VGDVLDIKRVATTNHLPHGLLDSLLPGPVTIVL 160


>ref|XP_003606393.1| YrdC domain-containing protein [Medicago truncatula]
           gi|355507448|gb|AES88590.1| YrdC domain-containing
           protein [Medicago truncatula]
          Length = 462

 Score = 40.8 bits (94), Expect(2) = 1e-06
 Identities = 26/75 (34%), Positives = 32/75 (42%)
 Frame = +1

Query: 502 MLWESRRCDISVVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXX 681
           M W   RCD+ + +K      GV+ P  + +A              VP DTLYG      
Sbjct: 1   MAWSMERCDLGLDVKT-----GVVHPATDAYAAEAVETLKAGKVIAVPTDTLYG--FACD 53

Query: 682 XXXXXXVNRIYEIKG 726
                 VNRIYEIKG
Sbjct: 54  ACSLEAVNRIYEIKG 68



 Score = 38.5 bits (88), Expect(2) = 1e-06
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
 Frame = +2

Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
           VG V DI  FA+T  LP GL D+LLPGP+TVV+
Sbjct: 79  VGDVSDINRFALTDHLPHGLLDSLLPGPVTVVL 111


>ref|NP_974970.1| DHBP synthase RibB-like alpha/beta domain-containing protein
           [Arabidopsis thaliana] gi|332009969|gb|AED97352.1| DHBP
           synthase RibB-like alpha/beta domain-containing protein
           [Arabidopsis thaliana]
          Length = 288

 Score = 43.1 bits (100), Expect(2) = 2e-06
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
 Frame = +1

Query: 358 MSISSKAVEK*PVFNFCFTCSLSSRAIPSLR-FALH*NKRYFGGFLCKKMLWESRRCDIS 534
           M++S++  EK P      +  L  + +  LR F++    R     L KKM+W   R +  
Sbjct: 1   MNLSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETC 60

Query: 535 VVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXXXXXXXXVNRIY 714
           VV K  +     + P  E +A              VP DTLYG            V+RIY
Sbjct: 61  VVSKSCL-----VHPATEAYAQEAIEAIKSEKVIAVPTDTLYG--FACDACSLEAVSRIY 113

Query: 715 EIKG 726
           EIKG
Sbjct: 114 EIKG 117



 Score = 35.4 bits (80), Expect(2) = 2e-06
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +2

Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
           VG V DI+  A T  LP GL D+LLPGP+T+V+
Sbjct: 128 VGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVL 160


>ref|NP_568924.1| DHBP synthase RibB-like alpha/beta domain-containing protein
           [Arabidopsis thaliana]
           gi|14190379|gb|AAK55670.1|AF378867_1 AT5g60590/muf9_240
           [Arabidopsis thaliana] gi|15215871|gb|AAK91479.1|
           AT5g60590/muf9_240 [Arabidopsis thaliana]
           gi|332009968|gb|AED97351.1| DHBP synthase RibB-like
           alpha/beta domain-containing protein [Arabidopsis
           thaliana]
          Length = 164

 Score = 43.1 bits (100), Expect(2) = 3e-06
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
 Frame = +1

Query: 358 MSISSKAVEK*PVFNFCFTCSLSSRAIPSLR-FALH*NKRYFGGFLCKKMLWESRRCDIS 534
           M++S++  EK P      +  L  + +  LR F++    R     L KKM+W   R +  
Sbjct: 1   MNLSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETC 60

Query: 535 VVMKIAVEKKGVIVPGKEEFADNXXXXXXXXXXXXVPPDTLYGXXXXXXXXXXXXVNRIY 714
           VV K  +     + P  E +A              VP DTLYG            V+RIY
Sbjct: 61  VVSKSCL-----VHPATEAYAQEAIEAIKSEKVIAVPTDTLYG--FACDACSLEAVSRIY 113

Query: 715 EIKG 726
           EIKG
Sbjct: 114 EIKG 117



 Score = 35.4 bits (80), Expect(2) = 3e-06
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +2

Query: 725 VGVVFDIECFAVT--LPRGLPDNLLPGPLTVVI 817
           VG V DI+  A T  LP GL D+LLPGP+T+V+
Sbjct: 128 VGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVL 160


Top