BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023686
         (1183 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   258   2e-66
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   246   6e-63
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...   229   1e-57
emb|CAN79190.1| hypothetical protein VITISV_000232 [Vitis vinifera]   218   3e-54
emb|CAN82386.1| hypothetical protein VITISV_029348 [Vitis vinifera]   216   9e-54

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  258 bits (659), Expect = 2e-66
 Identities = 138/384 (35%), Positives = 224/384 (58%), Gaps = 1/384 (0%)
 Frame = +2

Query: 35   KNSPFRFNKVWSTHPTFRDVVQSSWNKEVTGGPIIQVMKKLQMLKAEIRVWNREVFGHLD 214
            ++  F+F K W+ H   R +V  +W+K   G  + ++  KL+ +K   R WNR VFG +D
Sbjct: 243  RSGNFKFFKTWTEHEDCRRIVAENWSKHTRGHGMTRLQAKLKHMKQVFRHWNRTVFGDVD 302

Query: 215  TNIRKAEFELLQVQERSDQLLHDLSLQNEMTQKQELLDTARNSRASLWRQKSRLKFDEEM 394
              +R A  E+ ++Q+  D +     L  +  +   +L  A + +  LWR+K R +     
Sbjct: 303  RKVRMAVEEVNRIQQIIDSVGFSDQLYAQELEAHLILTKALHYQDELWREKLRDQRFIHG 362

Query: 395  DCNSEYFHNTLKFRQGAAIITELETEEGVVLSDQQIIKDHITHFYEEKYK-EIPTVQDEQ 571
            D N+ YFH   K R     I+ L+  + V+ +D   I+ H+ ++++  +  +   +Q++ 
Sbjct: 363  DRNTAYFHRISKVRATKNTISFLQDGDAVI-TDPARIEVHVLNYFQAIFSVDNSCIQNDL 421

Query: 572  LLSLIPNLVTAQDNLMLTMIPDYKEIEQVVFSMNADSSPGPDGFQGHFYHTCWPIIKLEV 751
            ++  IP+LV+  DN  L  +P + E++  VF++N D +PGP+GF GHFY T W I+  +V
Sbjct: 422  VVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADV 481

Query: 752  CRAVQSFFIQVIVPKGLNSNFITLIPKVKNASKLSHYRPICVGNFLMKIISKLLQLRLNN 931
             ++VQ FFI   + + +NSN I LIPKV  A  +  YRPI + NF  KIISK+L  RL +
Sbjct: 482  IQSVQDFFISGQLAQNINSNLIVLIPKVPGARVMGDYRPIALANFQFKIISKILADRLAD 541

Query: 932  IADKIITKEQTGFVPARSAQSSIGLASELFNEMKLTRRGGNVAIKLDISQAYDSMSWKFL 1111
            I  +II+ EQ GF+  R     + LASE  N ++  + GGNVA+K+DI++A+D++ W FL
Sbjct: 542  ITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFL 601

Query: 1112 YQVLKKLGFSNTWIKWINAIMRSA 1183
              VL++ GF   ++ WI  I++SA
Sbjct: 602  LAVLQRFGFDEKFVHWILVILQSA 625


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 642

 Score =  246 bits (629), Expect = 6e-63
 Identities = 137/381 (35%), Positives = 209/381 (54%)
 Frame = +2

Query: 41   SPFRFNKVWSTHPTFRDVVQSSWNKEVTGGPIIQVMKKLQMLKAEIRVWNREVFGHLDTN 220
            S F+F K+W+ H + + +++  WN  V G P       L +L ++++VWN++VFG++   
Sbjct: 3    SSFKFLKMWTLHDSCQKLIEDCWNVRVLGSP-------LYVLSSKLKVWNKDVFGNILIQ 55

Query: 221  IRKAEFELLQVQERSDQLLHDLSLQNEMTQKQELLDTARNSRASLWRQKSRLKFDEEMDC 400
            + +AE +L  +Q   +   H+ +L N     Q  LD A   + + W +K++LK+    D 
Sbjct: 56   VTQAEKKLSDIQNHINTSGHNDNLMNAEKIAQTNLDLALQKQETFWVEKAKLKWHVGGDR 115

Query: 401  NSEYFHNTLKFRQGAAIITELETEEGVVLSDQQIIKDHITHFYEEKYKEIPTVQDEQLLS 580
            N++YFH   K +    II+ L   E + L+DQ  I +H     EE               
Sbjct: 116  NTKYFHRLTKIKNKTKIISSLRKGEEI-LTDQTRISEHDHLLVEEA-------------- 160

Query: 581  LIPNLVTAQDNLMLTMIPDYKEIEQVVFSMNADSSPGPDGFQGHFYHTCWPIIKLEVCRA 760
             IP LV A  N +LTM+P  +E++  VF +N+D +PGPD F   F+   W I+K +V  A
Sbjct: 161  -IPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEA 219

Query: 761  VQSFFIQVIVPKGLNSNFITLIPKVKNASKLSHYRPICVGNFLMKIISKLLQLRLNNIAD 940
            V  FF    +P   N+N I LIPK  NA  +  YR I + NF  KII+K+L  RL  I  
Sbjct: 220  VLDFFKNGWLPNNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILP 279

Query: 941  KIITKEQTGFVPARSAQSSIGLASELFNEMKLTRRGGNVAIKLDISQAYDSMSWKFLYQV 1120
             II+KEQ GFV  R+ +  I L SE  N +     GGN+A+K+D+++A+D+++W FL  V
Sbjct: 280  SIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLV 339

Query: 1121 LKKLGFSNTWIKWINAIMRSA 1183
            LK  GF+  +  WI  I+ S+
Sbjct: 340  LKTFGFNELFCNWIKTILHSS 360


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score =  229 bits (584), Expect = 1e-57
 Identities = 131/395 (33%), Positives = 212/395 (53%), Gaps = 10/395 (2%)
 Frame = +2

Query: 29   KPKNSPFRFNKVWSTHPTFRDVVQSSWNKEVTGGPIIQVMKKLQMLKAEIRVWNREVFGH 208
            K K  PFRF K+W T   +  +V+ +W  +  G  +   ++K +++K   + WN+  FG+
Sbjct: 241  KSKAPPFRFEKMWCTRKDYDSLVKRTWCTKFYGSHMFNFVQKCKLVKINSKEWNKTQFGN 300

Query: 209  LDTNIRKAEFELLQVQERSDQLLHDLSLQNEMTQ---KQELLDTARNS----RASLWRQK 367
            +   +R       QV ER +++  +L + +  T    +QEL    RN       + W+QK
Sbjct: 301  IFRQLR-------QVDERLEEIQRNLLIDHNNTSLKTQQELFLAKRNKLLEYNTTYWKQK 353

Query: 368  SRLKFDEEMDCNSEYFHNTLKFRQGAAIITELETEEGVVLSDQQIIKDHITHFYEEKYKE 547
             +  F    D NS+++H     R+    I E   +    ++   +I+  IT  +++++  
Sbjct: 354  CKSDFMVLGDTNSKFYHTHASIRKYRNQIKEFIPDNAQPITQPDLIEKEITLAFKKRFIS 413

Query: 548  IPTVQDEQLL--SLIPNLVTAQDNLMLTMIPDYKEIEQVVFSMNADSSPGPDGFQGHFYH 721
             P  +  Q +  +L+  +V+  DN  LT     +EI+  VF +  D SPGPDGF  +F+ 
Sbjct: 414  NPACKFNQNVDFNLLSPIVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQ 473

Query: 722  TCWPIIKLEVCRAVQSFFIQVIVPKGLNSNFITLIPKVKNASKLSHYRPICVGNFLMKII 901
              W +I   VCRAVQ+FF    + K +N  F+ LIPKV      +H+RPI + + + K+I
Sbjct: 474  KYWTLIGKSVCRAVQAFFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVI 533

Query: 902  SKLLQLRLNNIADKIITKEQTGFVPARSAQSSIGLASELFNEMK-LTRRGGNVAIKLDIS 1078
            SK++  RL     KII   Q  F+P R  Q +I +A E+F+  K  T RGG +AIKLD+ 
Sbjct: 534  SKIITNRLKITLGKIIHPLQGAFIPERLIQDNILIAHEVFHSFKNKTGRGGWIAIKLDME 593

Query: 1079 QAYDSMSWKFLYQVLKKLGFSNTWIKWINAIMRSA 1183
            +AYD + WK++Y  + K+GFS  WI+WI + + SA
Sbjct: 594  KAYDRLEWKYIYTTMDKMGFSPIWIEWIRSCISSA 628


>emb|CAN79190.1| hypothetical protein VITISV_000232 [Vitis vinifera]
          Length = 1935

 Score =  218 bits (554), Expect = 3e-54
 Identities = 131/386 (33%), Positives = 208/386 (53%), Gaps = 6/386 (1%)
 Frame = +2

Query: 41   SPFRFNKVWSTHPTFRDVVQSSWNK-EVTGGPIIQVMKKLQMLKAEIRVWNREVFGHLDT 217
            +PFRF  +W  HP+F++   S W + +  G    + M+KLQ LKA+++ WN+  FG L  
Sbjct: 966  TPFRFENMWLHHPSFKESFGSWWREFQGDGWEGHKFMRKLQFLKAKLKEWNKNAFGDL-- 1023

Query: 218  NIRKAEFELLQV-----QERSDQLLHDLSLQNEMTQKQELLDTARNSRASLWRQKSRLKF 382
             I + +  LL +      E+   L  +L +Q  + +K EL +         WRQK+R+K+
Sbjct: 1024 -IERKKCILLDIANFDSMEQEGGLSPELLIQRAV-RKGELEELILREEIH-WRQKARVKW 1080

Query: 383  DEEMDCNSEYFHNTLKFRQGAAIITELETEEGVVLSDQQIIKDHITHFYEEKYKEIPTVQ 562
             +E DCNS++FH     R+    I  LE E G+VL +   IK+ I  ++E+ Y   P+ +
Sbjct: 1081 VKEGDCNSKFFHKVANGRRNRKFIKVLENERGLVLDNSDSIKEEILRYFEKLYAS-PSGE 1139

Query: 563  DEQLLSLIPNLVTAQDNLMLTMIPDYKEIEQVVFSMNADSSPGPDGFQGHFYHTCWPIIK 742
              ++  L  + ++++    L      +EI + +F M+ D +PGPDGF    +  CW +IK
Sbjct: 1140 SWRVEGLDWSPISSESASRLESPFTEEEISKAIFQMDRDKAPGPDGFTIAVFQDCWDVIK 1199

Query: 743  LEVCRAVQSFFIQVIVPKGLNSNFITLIPKVKNASKLSHYRPICVGNFLMKIISKLLQLR 922
             ++ R    F    I+ +  N++FI L+PK   A KLS YRPI +   L KII+K+L  R
Sbjct: 1200 EDLVRVFDEFHRSGIINQSTNASFIVLLPKKSMAKKLSDYRPISLITSLYKIIAKVLAGR 1259

Query: 923  LNNIADKIITKEQTGFVPARSAQSSIGLASELFNEMKLTRRGGNVAIKLDISQAYDSMSW 1102
            L  +  + I   Q  FV  R    ++ +A+E+ +E K +   G V  K+D  +AYD +SW
Sbjct: 1260 LRGVLHETIHSTQGAFVQGRQILDAVLIANEIVDEKKRSXEEG-VVFKIDFEKAYDHVSW 1318

Query: 1103 KFLYQVLKKLGFSNTWIKWINAIMRS 1180
             FL  V++K GF+  W KWI   + S
Sbjct: 1319 DFLDHVMEKKGFNPRWRKWIRGCLSS 1344


>emb|CAN82386.1| hypothetical protein VITISV_029348 [Vitis vinifera]
          Length = 2062

 Score =  216 bits (550), Expect = 9e-54
 Identities = 130/386 (33%), Positives = 208/386 (53%), Gaps = 6/386 (1%)
 Frame = +2

Query: 41   SPFRFNKVWSTHPTFRDVVQSSWNK-EVTGGPIIQVMKKLQMLKAEIRVWNREVFGHLDT 217
            +PFRF  +   HP+F++   S W + +  G    + M+KLQ LKA+++ WN+  FG L  
Sbjct: 1235 TPFRFENMXLHHPSFKESFGSWWREFQGDGWEGHKFMRKLQFLKAKLKEWNKNAFGDL-- 1292

Query: 218  NIRKAEFELLQV-----QERSDQLLHDLSLQNEMTQKQELLDTARNSRASLWRQKSRLKF 382
             I + +  LL +      E+   L  +L +Q  + +K EL +         WRQK+R+K+
Sbjct: 1293 -IERKKCILLDIANFDSMEQEGGLSPELLIQRAV-RKGELEELILREEIQ-WRQKARMKW 1349

Query: 383  DEEMDCNSEYFHNTLKFRQGAAIITELETEEGVVLSDQQIIKDHITHFYEEKYKEIPTVQ 562
             +E DCNS++FH     R+    I  LE E G+V+ + + IK+ I  ++E+ Y   P+ +
Sbjct: 1350 VKEGDCNSKFFHKVANGRRNRKFIKVLENERGLVMDNSESIKEEILRYFEKLYAS-PSGE 1408

Query: 563  DEQLLSLIPNLVTAQDNLMLTMIPDYKEIEQVVFSMNADSSPGPDGFQGHFYHTCWPIIK 742
              ++  L  + ++ +    L      +EI + +F M+ D +PGPDGF    +H CW +IK
Sbjct: 1409 SWRVEGLDWSPISRESASRLESPFTEEEISKAIFQMDRDKAPGPDGFTIAVFHDCWDVIK 1468

Query: 743  LEVCRAVQSFFIQVIVPKGLNSNFITLIPKVKNASKLSHYRPICVGNFLMKIISKLLQLR 922
             ++ R    F    I+ +  N++FI L+PK   A K+S YRPI +   L KII+K+L  R
Sbjct: 1469 EDLVRVFDEFHRSGIINQSTNASFIVLLPKKSMAKKISDYRPISLITSLYKIIAKVLARR 1528

Query: 923  LNNIADKIITKEQTGFVPARSAQSSIGLASELFNEMKLTRRGGNVAIKLDISQAYDSMSW 1102
            L  I  + I   Q  FV  R    ++ +A+E+ +E K +   G V  K+D  +AYD +SW
Sbjct: 1529 LRGILHETIHSTQGAFVQGRQILDAVLIANEIVDEKKRSGEEG-VVFKIDFEKAYDHVSW 1587

Query: 1103 KFLYQVLKKLGFSNTWIKWINAIMRS 1180
             FL  V++K GF+  W KWI   + S
Sbjct: 1588 DFLDHVMEKKGFNPRWRKWIRGCLSS 1613