BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023613
         (615 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_181553.1| pentatricopeptide repeat-containing protein [Ar...   128   9e-28
ref|XP_002512332.1| pentatricopeptide repeat-containing protein,...   128   9e-28
ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arab...   127   1e-27
ref|NP_191162.2| pentatricopeptide repeat-containing protein [Ar...   127   2e-27
emb|CAB87857.1| putative protein [Arabidopsis thaliana] gi|26450...   127   2e-27

>ref|NP_181553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75265350|sp|Q9S733.1|PP196_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g40240, mitochondrial; Flags: Precursor
           gi|4587998|gb|AAD25939.1|AF085279_12 hypothetical
           protein [Arabidopsis thaliana] gi|4586041|gb|AAD25659.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|28393486|gb|AAO42164.1| unknown protein [Arabidopsis
           thaliana] gi|28973567|gb|AAO64108.1| unknown protein
           [Arabidopsis thaliana] gi|110737021|dbj|BAF00465.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330254707|gb|AEC09801.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 351

 Score =  128 bits (321), Expect = 9e-28
 Identities = 64/103 (62%), Positives = 78/103 (75%)
 Frame = +3

Query: 3   RTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLSFEFVMA 182
           R+YDALV+GACRAGKVE A+ +LR+MEE+GV VLY TH HVIT L+  G + L  EFVMA
Sbjct: 213 RSYDALVLGACRAGKVEAAMAILRRMEEDGVTVLYSTHAHVITGLVEGGYYALGLEFVMA 272

Query: 183 FAGRDKPLDKENFGFLLNCLIKRRRVEEAKLVFFEMEERGLAM 311
           +AG+D  LD E+FGFL   L+KR+R EEA +V  EM  RGL M
Sbjct: 273 YAGKDLRLDSESFGFLAGKLVKRKRYEEAMIVVKEMVMRGLRM 315


>ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548293|gb|EEF49784.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  128 bits (321), Expect = 9e-28
 Identities = 65/103 (63%), Positives = 77/103 (74%)
 Frame = +3

Query: 3   RTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLSFEFVMA 182
           RTYDALV+GACR GKVE AL++LR+M ++GV VLY THVHVI +LL +GC+  + +FVM 
Sbjct: 501 RTYDALVLGACRTGKVEAALVVLRRMVDDGVHVLYSTHVHVINALLRLGCYVQATKFVMI 560

Query: 183 FAGRDKPLDKENFGFLLNCLIKRRRVEEAKLVFFEMEERGLAM 311
           F GRD   D E FG L + LIK  R EEAKLV  EMEERGL M
Sbjct: 561 FGGRDIAFDTEIFGILASKLIKLERFEEAKLVLKEMEERGLVM 603


>ref|XP_002876347.1| hypothetical protein ARALYDRAFT_486042 [Arabidopsis lyrata subsp.
           lyrata] gi|297322185|gb|EFH52606.1| hypothetical protein
           ARALYDRAFT_486042 [Arabidopsis lyrata subsp. lyrata]
          Length = 334

 Score =  127 bits (320), Expect = 1e-27
 Identities = 64/103 (62%), Positives = 80/103 (77%)
 Frame = +3

Query: 3   RTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLSFEFVMA 182
           RTYDALV+GAC++G VE A+++LR+MEEEG+ VLY TH +VI  LL  G + LS EFVMA
Sbjct: 217 RTYDALVLGACKSGNVEAAMVILRRMEEEGLSVLYATHAYVIGELLESGYYALSVEFVMA 276

Query: 183 FAGRDKPLDKENFGFLLNCLIKRRRVEEAKLVFFEMEERGLAM 311
           +AG+DK LD+EN G L + LIKR+R +EAKLV  EM  RGL M
Sbjct: 277 YAGKDKRLDEENLGSLASKLIKRKRFKEAKLVLKEMSVRGLRM 319


>ref|NP_191162.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546756|sp|Q9LY43.2|PP283_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g56030 gi|332645947|gb|AEE79468.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 351

 Score =  127 bits (319), Expect = 2e-27
 Identities = 62/103 (60%), Positives = 80/103 (77%)
 Frame = +3

Query: 3   RTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLSFEFVMA 182
           RTYDALV+GAC++G+VE A+ +LR+MEEEG+ VLY TH HVI  ++  G + LS EFVMA
Sbjct: 234 RTYDALVLGACKSGRVEAAMAILRRMEEEGLSVLYATHAHVIGEMVESGYYALSVEFVMA 293

Query: 183 FAGRDKPLDKENFGFLLNCLIKRRRVEEAKLVFFEMEERGLAM 311
           +AG+DK LD+EN G L + LIKR+R +EAK+V  EM  RGL M
Sbjct: 294 YAGKDKRLDEENLGSLASKLIKRKRFKEAKMVLKEMSVRGLRM 336


>emb|CAB87857.1| putative protein [Arabidopsis thaliana] gi|26450191|dbj|BAC42214.1|
           unknown protein [Arabidopsis thaliana]
           gi|114050667|gb|ABI49483.1| At3g56030 [Arabidopsis
           thaliana]
          Length = 336

 Score =  127 bits (319), Expect = 2e-27
 Identities = 62/103 (60%), Positives = 80/103 (77%)
 Frame = +3

Query: 3   RTYDALVMGACRAGKVEGALLLLRKMEEEGVRVLYCTHVHVITSLLGMGCFKLSFEFVMA 182
           RTYDALV+GAC++G+VE A+ +LR+MEEEG+ VLY TH HVI  ++  G + LS EFVMA
Sbjct: 219 RTYDALVLGACKSGRVEAAMAILRRMEEEGLSVLYATHAHVIGEMVESGYYALSVEFVMA 278

Query: 183 FAGRDKPLDKENFGFLLNCLIKRRRVEEAKLVFFEMEERGLAM 311
           +AG+DK LD+EN G L + LIKR+R +EAK+V  EM  RGL M
Sbjct: 279 YAGKDKRLDEENLGSLASKLIKRKRFKEAKMVLKEMSVRGLRM 321