BLASTX nr result

ID: Coptis25_contig00023611 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023611
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310337.1| single myb histone [Populus trichocarpa] gi|...   114   8e-24
ref|XP_002525279.1| Histone H1.1, putative [Ricinus communis] gi...   114   1e-23
gb|ABK96429.1| unknown [Populus trichocarpa x Populus deltoides]      114   1e-23
ref|XP_003524694.1| PREDICTED: uncharacterized protein LOC100779...   113   2e-23
ref|NP_001235806.1| MYB transcription factor MYB85 [Glycine max]...   113   2e-23

>ref|XP_002310337.1| single myb histone [Populus trichocarpa]
           gi|222853240|gb|EEE90787.1| single myb histone [Populus
           trichocarpa]
          Length = 293

 Score =  114 bits (285), Expect = 8e-24
 Identities = 53/68 (77%), Positives = 59/68 (86%)
 Frame = +1

Query: 148 MGAPKQRWTEEEEAALKAGILKHGLGKWRIISKDPEFSGILCLRSNVDLKDKWRNMNVTA 327
           MGAPKQ+WT EEEAALKAG+LKHG GKWR I  DPEFS +L LRSNVDLKDKWRN+NVTA
Sbjct: 1   MGAPKQKWTSEEEAALKAGVLKHGTGKWRTILMDPEFSAVLRLRSNVDLKDKWRNINVTA 60

Query: 328 QYGSRRLA 351
            +GSR+ A
Sbjct: 61  IWGSRKKA 68


>ref|XP_002525279.1| Histone H1.1, putative [Ricinus communis]
           gi|223535437|gb|EEF37107.1| Histone H1.1, putative
           [Ricinus communis]
          Length = 303

 Score =  114 bits (284), Expect = 1e-23
 Identities = 54/68 (79%), Positives = 59/68 (86%)
 Frame = +1

Query: 148 MGAPKQRWTEEEEAALKAGILKHGLGKWRIISKDPEFSGILCLRSNVDLKDKWRNMNVTA 327
           MGAPKQ+WT EEEAALKAG+LKHG GKWR I  DPEFS IL LRSNVDLKDKWRN+NVTA
Sbjct: 1   MGAPKQKWTAEEEAALKAGVLKHGTGKWRTILMDPEFSAILRLRSNVDLKDKWRNINVTA 60

Query: 328 QYGSRRLA 351
            +GSR+ A
Sbjct: 61  IWGSRQKA 68


>gb|ABK96429.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 140

 Score =  114 bits (284), Expect = 1e-23
 Identities = 53/68 (77%), Positives = 59/68 (86%)
 Frame = +1

Query: 148 MGAPKQRWTEEEEAALKAGILKHGLGKWRIISKDPEFSGILCLRSNVDLKDKWRNMNVTA 327
           MGAPKQ+WT EEEAALKAG+LKHG GKWR I  DPEFS +L LRSNVDLKDKWRN+NVTA
Sbjct: 1   MGAPKQKWTAEEEAALKAGVLKHGTGKWRTILMDPEFSAVLRLRSNVDLKDKWRNINVTA 60

Query: 328 QYGSRRLA 351
            +GSR+ A
Sbjct: 61  IWGSRKKA 68


>ref|XP_003524694.1| PREDICTED: uncharacterized protein LOC100779583 [Glycine max]
          Length = 295

 Score =  113 bits (282), Expect = 2e-23
 Identities = 53/68 (77%), Positives = 59/68 (86%)
 Frame = +1

Query: 148 MGAPKQRWTEEEEAALKAGILKHGLGKWRIISKDPEFSGILCLRSNVDLKDKWRNMNVTA 327
           MGAPKQ+WT EEEAALKAG+LKHG GKWR I  DPEFS IL +RSNVDLKDKWRN+NVTA
Sbjct: 1   MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTA 60

Query: 328 QYGSRRLA 351
            +GSR+ A
Sbjct: 61  IWGSRQKA 68


>ref|NP_001235806.1| MYB transcription factor MYB85 [Glycine max]
           gi|110931682|gb|ABH02840.1| MYB transcription factor
           MYB85 [Glycine max]
          Length = 295

 Score =  113 bits (282), Expect = 2e-23
 Identities = 53/68 (77%), Positives = 59/68 (86%)
 Frame = +1

Query: 148 MGAPKQRWTEEEEAALKAGILKHGLGKWRIISKDPEFSGILCLRSNVDLKDKWRNMNVTA 327
           MGAPKQ+WT EEEAALKAG+LKHG GKWR I  DPEFS IL +RSNVDLKDKWRN+NVTA
Sbjct: 1   MGAPKQKWTAEEEAALKAGVLKHGAGKWRTILTDPEFSAILHMRSNVDLKDKWRNINVTA 60

Query: 328 QYGSRRLA 351
            +GSR+ A
Sbjct: 61  IWGSRQKA 68


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