BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023579
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37517.3| unnamed protein product [Vitis vinifera]              178   4e-43
ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ...   178   4e-43
ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [C...   178   5e-43
ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|3...   177   1e-42
ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycin...   174   7e-42

>emb|CBI37517.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  178 bits (452), Expect = 4e-43
 Identities = 82/123 (66%), Positives = 98/123 (79%)
 Frame = +3

Query: 18  VGDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCT 197
           VGD+V +C +C   DMVL++KPDGNFMVGCLGYPQCRNVVWLPGSISEA +TT +CN CT
Sbjct: 302 VGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCT 361

Query: 198 PRSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSER 377
              PGP++ IQFKFR+LEIPP YN++HLGC+ GCDE L++L +ICGT SR       S R
Sbjct: 362 ---PGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSR------ISAR 412

Query: 378 GRG 386
           GRG
Sbjct: 413 GRG 415


>ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera]
          Length = 914

 Score =  178 bits (452), Expect = 4e-43
 Identities = 82/123 (66%), Positives = 98/123 (79%)
 Frame = +3

Query: 18  VGDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCT 197
           VGD+V +C +C   DMVL++KPDGNFMVGCLGYPQCRNVVWLPGSISEA +TT +CN CT
Sbjct: 627 VGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCT 686

Query: 198 PRSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSER 377
              PGP++ IQFKFR+LEIPP YN++HLGC+ GCDE L++L +ICGT SR       S R
Sbjct: 687 ---PGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSR------ISAR 737

Query: 378 GRG 386
           GRG
Sbjct: 738 GRG 740


>ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus]
          Length = 925

 Score =  178 bits (451), Expect = 5e-43
 Identities = 84/130 (64%), Positives = 100/130 (76%), Gaps = 2/130 (1%)
 Frame = +3

Query: 3   GGD--RTVGDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTT 176
           GGD  R VG++V  CG+C + DMVLK+  DGN+MVGCLG+PQCRNVVWLPGSI+EATVT+
Sbjct: 627 GGDENRAVGEVVQLCGLCQDSDMVLKRNRDGNYMVGCLGFPQCRNVVWLPGSIAEATVTS 686

Query: 177 QACNSCTPRSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPS 356
             C  CT   PGP++ IQFKFRQLEIPP YN NHLGC+GGCD+ L++L +ICGT SR   
Sbjct: 687 DRCTLCT---PGPVYLIQFKFRQLEIPPNYNANHLGCVGGCDDILRQLTEICGTGSR--- 740

Query: 357 VPVSSERGRG 386
               S RGRG
Sbjct: 741 ---VSARGRG 747


>ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|355491700|gb|AES72903.1|
           DNA topoisomerase [Medicago truncatula]
          Length = 432

 Score =  177 bits (448), Expect = 1e-42
 Identities = 84/123 (68%), Positives = 95/123 (77%)
 Frame = +3

Query: 21  GDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTP 200
           G +V RC +C   DMVLKK  DGNFMVGC  YPQCR+VVWLPGSISEA VTT ACN+CT 
Sbjct: 109 GVVVRRCRLCQESDMVLKKNRDGNFMVGCRSYPQCRSVVWLPGSISEAVVTTNACNNCT- 167

Query: 201 RSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSERG 380
             PGP++ IQFKF+QL+IPP YNVNHLGCIGGCDE L +L +ICGT SR P+      RG
Sbjct: 168 --PGPVYLIQFKFQQLKIPPSYNVNHLGCIGGCDEILTQLTEICGTGSRMPA------RG 219

Query: 381 RGP 389
           RGP
Sbjct: 220 RGP 222


>ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycine max]
          Length = 913

 Score =  174 bits (441), Expect = 7e-42
 Identities = 79/130 (60%), Positives = 94/130 (72%), Gaps = 6/130 (4%)
 Frame = +3

Query: 21   GDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTP 200
            G++V RCG+C   DM+L+K  DGNFMVGC+GYPQCRN VWLPGS+SEA VTT  CN CT 
Sbjct: 633  GEVVRRCGLCQESDMLLRKNRDGNFMVGCMGYPQCRNAVWLPGSVSEAVVTTNTCNFCT- 691

Query: 201  RSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICG------TRSRNPSVP 362
              PGP++ IQFKFR+LEIPP Y+ NHLGCIGGCDE L +L +ICG       R R P+ P
Sbjct: 692  --PGPVYLIQFKFRRLEIPPNYSPNHLGCIGGCDEILAQLTEICGRGPRMPARPRGPTAP 749

Query: 363  VSSERGRGPR 392
             S+     PR
Sbjct: 750  TSNAHHTNPR 759