BLASTX nr result
ID: Coptis25_contig00023579
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00023579 (392 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI37517.3| unnamed protein product [Vitis vinifera] 178 4e-43 ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis ... 178 4e-43 ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [C... 178 5e-43 ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|3... 177 1e-42 ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycin... 174 7e-42 >emb|CBI37517.3| unnamed protein product [Vitis vinifera] Length = 589 Score = 178 bits (452), Expect = 4e-43 Identities = 82/123 (66%), Positives = 98/123 (79%) Frame = +3 Query: 18 VGDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCT 197 VGD+V +C +C DMVL++KPDGNFMVGCLGYPQCRNVVWLPGSISEA +TT +CN CT Sbjct: 302 VGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCT 361 Query: 198 PRSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSER 377 PGP++ IQFKFR+LEIPP YN++HLGC+ GCDE L++L +ICGT SR S R Sbjct: 362 ---PGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSR------ISAR 412 Query: 378 GRG 386 GRG Sbjct: 413 GRG 415 >ref|XP_002264607.1| PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera] Length = 914 Score = 178 bits (452), Expect = 4e-43 Identities = 82/123 (66%), Positives = 98/123 (79%) Frame = +3 Query: 18 VGDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCT 197 VGD+V +C +C DMVL++KPDGNFMVGCLGYPQCRNVVWLPGSISEA +TT +CN CT Sbjct: 627 VGDVVRQCTLCQESDMVLRRKPDGNFMVGCLGYPQCRNVVWLPGSISEAAITTISCNHCT 686 Query: 198 PRSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSER 377 PGP++ IQFKFR+LEIPP YN++HLGC+ GCDE L++L +ICGT SR S R Sbjct: 687 ---PGPVYKIQFKFRRLEIPPNYNIDHLGCVCGCDEILRQLTEICGTGSR------ISAR 737 Query: 378 GRG 386 GRG Sbjct: 738 GRG 740 >ref|XP_004136599.1| PREDICTED: DNA topoisomerase 3-alpha-like [Cucumis sativus] Length = 925 Score = 178 bits (451), Expect = 5e-43 Identities = 84/130 (64%), Positives = 100/130 (76%), Gaps = 2/130 (1%) Frame = +3 Query: 3 GGD--RTVGDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTT 176 GGD R VG++V CG+C + DMVLK+ DGN+MVGCLG+PQCRNVVWLPGSI+EATVT+ Sbjct: 627 GGDENRAVGEVVQLCGLCQDSDMVLKRNRDGNYMVGCLGFPQCRNVVWLPGSIAEATVTS 686 Query: 177 QACNSCTPRSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPS 356 C CT PGP++ IQFKFRQLEIPP YN NHLGC+GGCD+ L++L +ICGT SR Sbjct: 687 DRCTLCT---PGPVYLIQFKFRQLEIPPNYNANHLGCVGGCDDILRQLTEICGTGSR--- 740 Query: 357 VPVSSERGRG 386 S RGRG Sbjct: 741 ---VSARGRG 747 >ref|XP_003602652.1| DNA topoisomerase [Medicago truncatula] gi|355491700|gb|AES72903.1| DNA topoisomerase [Medicago truncatula] Length = 432 Score = 177 bits (448), Expect = 1e-42 Identities = 84/123 (68%), Positives = 95/123 (77%) Frame = +3 Query: 21 GDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTP 200 G +V RC +C DMVLKK DGNFMVGC YPQCR+VVWLPGSISEA VTT ACN+CT Sbjct: 109 GVVVRRCRLCQESDMVLKKNRDGNFMVGCRSYPQCRSVVWLPGSISEAVVTTNACNNCT- 167 Query: 201 RSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICGTRSRNPSVPVSSERG 380 PGP++ IQFKF+QL+IPP YNVNHLGCIGGCDE L +L +ICGT SR P+ RG Sbjct: 168 --PGPVYLIQFKFQQLKIPPSYNVNHLGCIGGCDEILTQLTEICGTGSRMPA------RG 219 Query: 381 RGP 389 RGP Sbjct: 220 RGP 222 >ref|XP_003526873.1| PREDICTED: DNA topoisomerase 3-alpha [Glycine max] Length = 913 Score = 174 bits (441), Expect = 7e-42 Identities = 79/130 (60%), Positives = 94/130 (72%), Gaps = 6/130 (4%) Frame = +3 Query: 21 GDIVCRCGVCANFDMVLKKKPDGNFMVGCLGYPQCRNVVWLPGSISEATVTTQACNSCTP 200 G++V RCG+C DM+L+K DGNFMVGC+GYPQCRN VWLPGS+SEA VTT CN CT Sbjct: 633 GEVVRRCGLCQESDMLLRKNRDGNFMVGCMGYPQCRNAVWLPGSVSEAVVTTNTCNFCT- 691 Query: 201 RSPGPIFTIQFKFRQLEIPPGYNVNHLGCIGGCDETLKELIDICG------TRSRNPSVP 362 PGP++ IQFKFR+LEIPP Y+ NHLGCIGGCDE L +L +ICG R R P+ P Sbjct: 692 --PGPVYLIQFKFRRLEIPPNYSPNHLGCIGGCDEILAQLTEICGRGPRMPARPRGPTAP 749 Query: 363 VSSERGRGPR 392 S+ PR Sbjct: 750 TSNAHHTNPR 759