BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023568
         (703 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi...   181   3e-77
emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]   181   3e-77
emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]   127   6e-43
ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containi...   127   8e-43
ref|XP_002528032.1| pentatricopeptide repeat-containing protein,...   116   8e-40

>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  181 bits (460), Expect(2) = 3e-77
 Identities = 90/137 (65%), Positives = 110/137 (80%)
 Frame = -2

Query: 411 GSALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDI 232
           GSALI+MYSGCD +E AC VF+  S +DVVVWNSIISACAQ G+ V+AL+ LR M +S++
Sbjct: 537 GSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 596

Query: 231 EPNKVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
           E N VT+VS LPAC++LAAL+QGKEIHQF IR G D    I N LIDMYGRCG I+K+RR
Sbjct: 597 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 656

Query: 51  VFYLIPERDIFSWNTMI 1
           +F L+P+RD+ SWN MI
Sbjct: 657 IFDLMPQRDLVSWNVMI 673



 Score =  133 bits (335), Expect(2) = 3e-77
 Identities = 65/106 (61%), Positives = 78/106 (73%)
 Frame = -1

Query: 703 FNSIKQKVLISWNSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDG 524
           F  IKQ  L+SWN+MLAGYA +G  EE  EL +EMK  G+EPD+ITWNGL+TG+TQ GDG
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 523 IMALEFFYRMCETNTNPNTITLSGALAACSLVKDLKLGKCSYNNVL 386
             ALEFF RM     +PNT T+SGALAAC  V++LKLGK  +  VL
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVL 526



 Score = 62.4 bits (150), Expect(2) = 2e-16
 Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
 Frame = -2

Query: 408  SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
            ++LI MY  C  ++ +  +F++   +D+V WN +IS    HG G+ A+N  +      ++
Sbjct: 639  NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLK 698

Query: 228  PNKVTVVSVLPACARLAALQQG-KEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
            PN +T  ++L AC+    +++G K           D  +  +  ++D+  R G   +   
Sbjct: 699  PNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 51   VFYLIP-ERDIFSWNTMI 1
                +P E +   W +++
Sbjct: 759  FIEKMPFEPNAAVWGSLL 776



 Score = 48.9 bits (115), Expect(2) = 2e-16
 Identities = 26/87 (29%), Positives = 47/87 (54%)
 Frame = -1

Query: 667 NSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCE 488
           +++++ Y+     E    +F+E+ +     DV+ WN +I+   Q+G  + AL+    M  
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTR----DVVVWNSIISACAQSGRSVNALDLLREMNL 593

Query: 487 TNTNPNTITLSGALAACSLVKDLKLGK 407
           +N   NT+T+  AL ACS +  L+ GK
Sbjct: 594 SNVEVNTVTMVSALPACSKLAALRQGK 620



 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 6/142 (4%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWAC-YVFNVFSDKD----VVVWNSIISACAQHGQGVSALNFLRGML 244
           +A+I+ Y+     E A  Y   +   KD    VV W ++I+   Q+G    AL+  R M+
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 243 VSDIEPNKVTVVSVLPACARLAALQQGKEIHQFNIR-RGFDMHIAIWNGLIDMYGRCGLI 67
           +  ++PN +T+ S + AC  L+ L+ G+EIH + I+    D  + + N L+D Y +C  +
Sbjct: 355 LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV 414

Query: 66  KKARRVFYLIPERDIFSWNTMI 1
           + ARR F +I + D+ SWN M+
Sbjct: 415 EVARRKFGMIKQTDLVSWNAML 436



 Score = 70.5 bits (171), Expect(2) = 4e-15
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
 Frame = -1

Query: 676 ISWNSMLAGYAQKGCREETFELFNEMKSL-GVEPDVITWNGLITGYTQNGDGIMALEFFY 500
           ++WN++++GYAQ G  EE  + F EM  L   +P+V++W  LI G  QNG    AL  F 
Sbjct: 292 VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFR 351

Query: 499 RMCETNTNPNTITLSGALAACSLVKDLKLGK 407
           +M      PN+IT++ A++AC+ +  L+ G+
Sbjct: 352 KMVLEGVKPNSITIASAVSACTNLSLLRHGR 382



 Score = 36.6 bits (83), Expect(2) = 4e-15
 Identities = 28/122 (22%), Positives = 45/122 (36%)
 Frame = -2

Query: 411 GSALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDI 232
           G++L+  Y+ C  +E A   F +    D+V WN++++  A  G    A+  L  M    I
Sbjct: 401 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGI 460

Query: 231 EPNKVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
           EP+ +T                                   WNGL+  + + G  K A  
Sbjct: 461 EPDIIT-----------------------------------WNGLVTGFTQYGDGKAALE 485

Query: 51  VF 46
            F
Sbjct: 486 FF 487



 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 36/112 (32%), Positives = 63/112 (56%)
 Frame = -2

Query: 336 DKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNKVTVVSVLPACARLAALQQGKE 157
           + D++ WN +++   Q+G G +AL F + M    ++PN  T+   L AC ++  L+ GKE
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 156 IHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARRVFYLIPERDIFSWNTMI 1
           IH + +R   ++   + + LI MY  C  ++ A  VF  +  RD+  WN++I
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSII 572



 Score = 48.1 bits (113), Expect(2) = 7e-11
 Identities = 26/94 (27%), Positives = 45/94 (47%)
 Frame = -1

Query: 661 MLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCETN 482
           +L  Y Q GC E+   +F++M     E +V +W  ++  Y   GD    ++ FY M    
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMS----ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185

Query: 481 TNPNTITLSGALAACSLVKDLKLGKCSYNNVLGM 380
             P+         ACS +K+ ++GK  Y+ +L +
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI 219



 Score = 44.7 bits (104), Expect(2) = 7e-11
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
 Frame = -2

Query: 405 ALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEP 226
           +++ M+  C  M+ A   F     KDV +WN ++S     G+   AL  +  M +S ++P
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKP 289

Query: 225 NKVTVVSVLPACARLAALQQ-GKEIHQFNIRRGFDMHIAIWNGLI 94
           ++VT  +++   A+    ++  K   +    + F  ++  W  LI
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334



 Score = 69.3 bits (168), Expect = 7e-10
 Identities = 36/137 (26%), Positives = 68/137 (49%)
 Frame = -2

Query: 411 GSALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDI 232
           GS L+ +Y     +E A  +F+  S+++V  W +I+      G     +     M+   +
Sbjct: 127 GSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV 186

Query: 231 EPNKVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
            P+      V  AC+ L   + GK+++ + +  GF+ +  +   ++DM+ +CG +  ARR
Sbjct: 187 RPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARR 246

Query: 51  VFYLIPERDIFSWNTMI 1
            F  I  +D+F WN M+
Sbjct: 247 FFEEIEFKDVFMWNIMV 263


>emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  181 bits (460), Expect(2) = 3e-77
 Identities = 90/137 (65%), Positives = 110/137 (80%)
 Frame = -2

Query: 411 GSALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDI 232
           GSALI+MYSGCD +E AC VF+  S +DVVVWNSIISACAQ G+ V+AL+ LR M +S++
Sbjct: 537 GSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 596

Query: 231 EPNKVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
           E N VT+VS LPAC++LAAL+QGKEIHQF IR G D    I N LIDMYGRCG I+K+RR
Sbjct: 597 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 656

Query: 51  VFYLIPERDIFSWNTMI 1
           +F L+P+RD+ SWN MI
Sbjct: 657 IFDLMPQRDLVSWNVMI 673



 Score =  133 bits (335), Expect(2) = 3e-77
 Identities = 65/106 (61%), Positives = 78/106 (73%)
 Frame = -1

Query: 703 FNSIKQKVLISWNSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDG 524
           F  IKQ  L+SWN+MLAGYA +G  EE  EL +EMK  G+EPD+ITWNGL+TG+TQ GDG
Sbjct: 421 FGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDG 480

Query: 523 IMALEFFYRMCETNTNPNTITLSGALAACSLVKDLKLGKCSYNNVL 386
             ALEFF RM     +PNT T+SGALAAC  V++LKLGK  +  VL
Sbjct: 481 KAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVL 526



 Score = 62.8 bits (151), Expect(2) = 2e-16
 Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
 Frame = -2

Query: 408  SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
            ++LI MY  C  ++ +  +F++   +D+V WN +IS    HG G+ A+N  +      ++
Sbjct: 639  NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLK 698

Query: 228  PNKVTVVSVLPACARLAALQQG-KEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
            PN +T  ++L AC+    +++G K           D  +  +  ++D+  R G   +   
Sbjct: 699  PNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLE 758

Query: 51   VFYLIP-ERDIFSWNTMI 1
                +P E +   W +++
Sbjct: 759  FIEKMPFEPNAAVWGSLL 776



 Score = 48.9 bits (115), Expect(2) = 2e-16
 Identities = 26/87 (29%), Positives = 47/87 (54%)
 Frame = -1

Query: 667 NSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCE 488
           +++++ Y+     E    +F+E+ +     DV+ WN +I+   Q+G  + AL+    M  
Sbjct: 538 SALISMYSGCDSLEVACSVFSELSTR----DVVVWNSIISACAQSGRSVNALDLLREMNL 593

Query: 487 TNTNPNTITLSGALAACSLVKDLKLGK 407
           +N   NT+T+  AL ACS +  L+ GK
Sbjct: 594 SNVEVNTVTMVSALPACSKLAALRQGK 620



 Score = 87.8 bits (216), Expect = 2e-15
 Identities = 47/142 (33%), Positives = 79/142 (55%), Gaps = 6/142 (4%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWAC-YVFNVFSDKD----VVVWNSIISACAQHGQGVSALNFLRGML 244
           +A+I+ Y+     E A  Y   +   KD    VV W ++I+   Q+G    AL+  R M+
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 243 VSDIEPNKVTVVSVLPACARLAALQQGKEIHQFNIR-RGFDMHIAIWNGLIDMYGRCGLI 67
           +  ++PN +T+ S + AC  L+ L+ G+EIH + I+    D  + + N L+D Y +C  +
Sbjct: 355 LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV 414

Query: 66  KKARRVFYLIPERDIFSWNTMI 1
           + ARR F +I + D+ SWN M+
Sbjct: 415 EVARRKFGMIKQTDLVSWNAML 436



 Score = 70.5 bits (171), Expect(2) = 4e-15
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
 Frame = -1

Query: 676 ISWNSMLAGYAQKGCREETFELFNEMKSL-GVEPDVITWNGLITGYTQNGDGIMALEFFY 500
           ++WN++++GYAQ G  EE  + F EM  L   +P+V++W  LI G  QNG    AL  F 
Sbjct: 292 VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFR 351

Query: 499 RMCETNTNPNTITLSGALAACSLVKDLKLGK 407
           +M      PN+IT++ A++AC+ +  L+ G+
Sbjct: 352 KMVLEGVKPNSITIASAVSACTNLSLLRHGR 382



 Score = 36.6 bits (83), Expect(2) = 4e-15
 Identities = 28/122 (22%), Positives = 45/122 (36%)
 Frame = -2

Query: 411 GSALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDI 232
           G++L+  Y+ C  +E A   F +    D+V WN++++  A  G    A+  L  M    I
Sbjct: 401 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGI 460

Query: 231 EPNKVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
           EP+ +T                                   WNGL+  + + G  K A  
Sbjct: 461 EPDIIT-----------------------------------WNGLVTGFTQYGDGKAALE 485

Query: 51  VF 46
            F
Sbjct: 486 FF 487



 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 36/112 (32%), Positives = 63/112 (56%)
 Frame = -2

Query: 336 DKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNKVTVVSVLPACARLAALQQGKE 157
           + D++ WN +++   Q+G G +AL F + M    ++PN  T+   L AC ++  L+ GKE
Sbjct: 461 EPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKE 520

Query: 156 IHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARRVFYLIPERDIFSWNTMI 1
           IH + +R   ++   + + LI MY  C  ++ A  VF  +  RD+  WN++I
Sbjct: 521 IHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSII 572



 Score = 48.1 bits (113), Expect(2) = 7e-11
 Identities = 26/94 (27%), Positives = 45/94 (47%)
 Frame = -1

Query: 661 MLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCETN 482
           +L  Y Q GC E+   +F++M     E +V +W  ++  Y   GD    ++ FY M    
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMS----ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEG 185

Query: 481 TNPNTITLSGALAACSLVKDLKLGKCSYNNVLGM 380
             P+         ACS +K+ ++GK  Y+ +L +
Sbjct: 186 VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI 219



 Score = 44.7 bits (104), Expect(2) = 7e-11
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
 Frame = -2

Query: 405 ALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEP 226
           +++ M+  C  M+ A   F     KDV +WN ++S     G+   AL  +  M +S ++P
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKP 289

Query: 225 NKVTVVSVLPACARLAALQQ-GKEIHQFNIRRGFDMHIAIWNGLI 94
           ++VT  +++   A+    ++  K   +    + F  ++  W  LI
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334



 Score = 69.3 bits (168), Expect = 7e-10
 Identities = 36/137 (26%), Positives = 68/137 (49%)
 Frame = -2

Query: 411 GSALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDI 232
           GS L+ +Y     +E A  +F+  S+++V  W +I+      G     +     M+   +
Sbjct: 127 GSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV 186

Query: 231 EPNKVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
            P+      V  AC+ L   + GK+++ + +  GF+ +  +   ++DM+ +CG +  ARR
Sbjct: 187 RPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARR 246

Query: 51  VFYLIPERDIFSWNTMI 1
            F  I  +D+F WN M+
Sbjct: 247 FFEEIEFKDVFMWNIMV 263


>emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  127 bits (320), Expect(2) = 6e-43
 Identities = 65/137 (47%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
           ++LITMYS C  ++ A  +F +   K ++ WNSIIS C    +   A   LR ML+S IE
Sbjct: 450 NSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIE 509

Query: 228 PNKVTVVSVLPACARLAALQQGKEIHQFNIRR-GFDMHIAIWNGLIDMYGRCGLIKKARR 52
           PN VT+ SVLP CAR+A LQ GKE H +  RR  F  H+ +WN L+DMY R G + +ARR
Sbjct: 510 PNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARR 569

Query: 51  VFYLIPERDIFSWNTMI 1
           VF ++ ERD  ++ +MI
Sbjct: 570 VFDMLGERDKMTYTSMI 586



 Score = 72.8 bits (177), Expect(2) = 6e-43
 Identities = 37/99 (37%), Positives = 58/99 (58%)
 Frame = -1

Query: 703 FNSIKQKVLISWNSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDG 524
           F+ I ++  +SWNSM++ YA  G   E FELF  M +  +E ++I WN +  GY + G+ 
Sbjct: 333 FDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNY 392

Query: 523 IMALEFFYRMCETNTNPNTITLSGALAACSLVKDLKLGK 407
             ALE   +M +  ++ +++ L   L ACS + D KLGK
Sbjct: 393 KGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGK 431



 Score = 73.9 bits (180), Expect(2) = 5e-16
 Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 35/171 (20%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
           +ALI+MY  C  +  A  +F+   ++D V WNS+IS  A  G    A      M   DIE
Sbjct: 314 NALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIE 373

Query: 228 PN-----------------------------------KVTVVSVLPACARLAALQQGKEI 154
            N                                    V ++  L AC+ +   + GKEI
Sbjct: 374 LNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEI 433

Query: 153 HQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARRVFYLIPERDIFSWNTMI 1
           H F IR  F     + N LI MY RC  +K A  +F L+  + + SWN++I
Sbjct: 434 HSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSII 484



 Score = 36.2 bits (82), Expect(2) = 5e-16
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 565 WNGLITGYTQNGDGIMALEFFYRMCETNTNPNTITLSGALAACSLVKDLKLGK 407
           WN LI+ Y +NG    AL  + +M +    P+  T    L AC    DL  GK
Sbjct: 243 WNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGK 295



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
 Frame = -2

Query: 402 LITMYSGCDHMEWACYVFNVFSDKDVVV----------WNSIISACAQHGQGVSALNFLR 253
           L+T YS           FN+  D  V+           WN +IS+  ++G    AL+  +
Sbjct: 215 LVTFYSA----------FNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYK 264

Query: 252 GMLVSDIEPNKVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCG 73
            M+   I P+  T  SVL AC     L  GKE+H+          + + N LI MYG+CG
Sbjct: 265 QMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCG 324

Query: 72  LIKKARRVFYLIPERDIFSWNTMI 1
            +  AR +F  IPERD  SWN+MI
Sbjct: 325 KVGIARDLFDKIPERDAVSWNSMI 348



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
           +AL+ MY+    +  A  VF++  ++D + + S+I+     G+G +AL     M    I+
Sbjct: 552 NALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIK 611

Query: 228 PNKVTVVSVLPACARLAALQQGKEI-HQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
           P+ +T+++VL AC+    + QG+ +  +     G   H+  +  + D++GR GL+ KA+ 
Sbjct: 612 PDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKE 671

Query: 51  VFYLIPERDI-FSWNTMI 1
           +   +P +     W T+I
Sbjct: 672 IIRNMPYKPTPAMWATLI 689


>ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  127 bits (319), Expect(2) = 8e-43
 Identities = 65/137 (47%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
           +ALITMYS C  ++ A  +F +   K ++ WNSIIS C    +   A   LR ML+  IE
Sbjct: 376 NALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIE 435

Query: 228 PNKVTVVSVLPACARLAALQQGKEIHQFNIRR-GFDMHIAIWNGLIDMYGRCGLIKKARR 52
           PN VT+ SVLP CAR+A LQ GKE H +  RR  F  H+ +WN L+DMY R G + +ARR
Sbjct: 436 PNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARR 495

Query: 51  VFYLIPERDIFSWNTMI 1
           VF ++ ERD  ++ +MI
Sbjct: 496 VFDMLGERDKMTYTSMI 512



 Score = 72.8 bits (177), Expect(2) = 8e-43
 Identities = 37/99 (37%), Positives = 58/99 (58%)
 Frame = -1

Query: 703 FNSIKQKVLISWNSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDG 524
           F+ I ++  +SWNSM++ YA  G   E FELF  M +  +E ++I WN +  GY + G+ 
Sbjct: 259 FDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNY 318

Query: 523 IMALEFFYRMCETNTNPNTITLSGALAACSLVKDLKLGK 407
             ALE   +M +  ++ +++ L   L ACS + D KLGK
Sbjct: 319 KGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGK 357



 Score = 72.8 bits (177), Expect(2) = 1e-15
 Identities = 50/171 (29%), Positives = 72/171 (42%), Gaps = 35/171 (20%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
           +ALI+MY  C  +  A  +F+   ++D V WNS+IS  A  G    A      M   DIE
Sbjct: 240 NALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIE 299

Query: 228 PN-----------------------------------KVTVVSVLPACARLAALQQGKEI 154
            N                                    V ++  L AC+ +   + GKEI
Sbjct: 300 LNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEI 359

Query: 153 HQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARRVFYLIPERDIFSWNTMI 1
           H F IR  F     + N LI MY RC  +K A  +F L+  + + +WN++I
Sbjct: 360 HSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSII 410



 Score = 36.2 bits (82), Expect(2) = 1e-15
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 565 WNGLITGYTQNGDGIMALEFFYRMCETNTNPNTITLSGALAACSLVKDLKLGK 407
           WN LI+ Y +NG    AL  + +M +    P+  T    L AC    DL  GK
Sbjct: 169 WNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGK 221



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 50/144 (34%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
 Frame = -2

Query: 402 LITMYSGCDHMEWACYVFNVFSDKDVVV----------WNSIISACAQHGQGVSALNFLR 253
           L+T YS           FN+  D  V+           WN +IS+  ++G    AL+  +
Sbjct: 141 LVTFYSA----------FNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQKALSAYK 190

Query: 252 GMLVSDIEPNKVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCG 73
            M+   I P+  T  SVL AC     L  GKE+H+          + + N LI MYG+CG
Sbjct: 191 QMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALISMYGKCG 250

Query: 72  LIKKARRVFYLIPERDIFSWNTMI 1
            +  AR +F  IPERD  SWN+MI
Sbjct: 251 KVGIARDLFDKIPERDAVSWNSMI 274



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
           +AL+ MY+    +  A  VF++  ++D + + S+I+     G+G +AL     M    I+
Sbjct: 478 NALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIK 537

Query: 228 PNKVTVVSVLPACARLAALQQGKEI-HQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
           P+ +T+++VL AC+    + QG+ +  +     G   H+  +  + D++GR GL+ KA+ 
Sbjct: 538 PDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKE 597

Query: 51  VFYLIPERDI-FSWNTMI 1
           +   +P +     W T+I
Sbjct: 598 IIRNMPYKPTPAMWATLI 615


>ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532562|gb|EEF34350.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 730

 Score =  116 bits (290), Expect(2) = 8e-40
 Identities = 58/137 (42%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
           +ALITMYS C ++  A  +F     K+++ WNS++S      +   A    R ML+S IE
Sbjct: 369 NALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDRSEEASFLFREMLLSGIE 428

Query: 228 PNKVTVVSVLPACARLAALQQGKEIHQFNIRR-GFDMHIAIWNGLIDMYGRCGLIKKARR 52
           PN VT+ S+LP CAR+A LQ GKE H + +RR GF  ++ +WN L+DMY R G + +A+R
Sbjct: 429 PNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKR 488

Query: 51  VFYLIPERDIFSWNTMI 1
           +F  I  RD  ++ ++I
Sbjct: 489 LFDSISRRDEVTYTSLI 505



 Score = 73.9 bits (180), Expect(2) = 8e-40
 Identities = 36/99 (36%), Positives = 60/99 (60%)
 Frame = -1

Query: 703 FNSIKQKVLISWNSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDG 524
           F ++ ++  +SWN+M++GYA KG  +E FELF +M+  G+E ++ITWN +  G  Q+G+ 
Sbjct: 252 FENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGIELNIITWNTIAGGCVQSGNF 311

Query: 523 IMALEFFYRMCETNTNPNTITLSGALAACSLVKDLKLGK 407
             ALE    M     + +++     L ACS +  +KLG+
Sbjct: 312 EEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGR 350



 Score = 72.0 bits (175), Expect(2) = 1e-14
 Identities = 36/110 (32%), Positives = 58/110 (52%)
 Frame = -2

Query: 330 DVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPNKVTVVSVLPACARLAALQQGKEIH 151
           +++ WN+I   C Q G    AL  L  M    I+ + V  +  L AC+ + A++ G+EIH
Sbjct: 294 NIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGREIH 353

Query: 150 QFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARRVFYLIPERDIFSWNTMI 1
              IR  +D    + N LI MY RC  ++ A  +F     ++I +WN+M+
Sbjct: 354 GSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSML 403



 Score = 33.5 bits (75), Expect(2) = 1e-14
 Identities = 16/97 (16%), Positives = 39/97 (40%)
 Frame = -1

Query: 676 ISWNSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYR 497
           + WN +++ Y + G   E    + +M   G+ PD  T+  ++    +  D     +    
Sbjct: 160 LPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHAS 219

Query: 496 MCETNTNPNTITLSGALAACSLVKDLKLGKCSYNNVL 386
           +  +    N    +  ++  +   +L   +C + N+L
Sbjct: 220 INASCLGWNLFVHNSLVSMYAKTGELSTARCLFENML 256



 Score = 58.2 bits (139), Expect(2) = 1e-13
 Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
 Frame = -2

Query: 408 SALITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIE 229
           ++L+ MY+    +  A  +F+  S +D V + S+I+     G+G  AL     M    I+
Sbjct: 471 NSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIK 530

Query: 228 PNKVTVVSVLPACARLAALQQGKEIHQ-FNIRRGFDMHIAIWNGLIDMYGRCGLIKKARR 52
           P+ VT+V+VL AC+    + +G ++ +      G    +  +  ++D++GR GL+ KA+ 
Sbjct: 531 PDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKE 590

Query: 51  VFYLIPERDIFS-WNTMI 1
           +   +P R   + W T++
Sbjct: 591 MITRMPYRPSSAMWATLL 608



 Score = 43.9 bits (102), Expect(2) = 1e-13
 Identities = 23/87 (26%), Positives = 43/87 (49%)
 Frame = -1

Query: 667 NSMLAGYAQKGCREETFELFNEMKSLGVEPDVITWNGLITGYTQNGDGIMALEFFYRMCE 488
           N+++  Y++       + LF   ++     ++ITWN +++GYT       A   F  M  
Sbjct: 369 NALITMYSRCKYLRHAYNLFQSTRT----KNIITWNSMLSGYTHMDRSEEASFLFREMLL 424

Query: 487 TNTNPNTITLSGALAACSLVKDLKLGK 407
           +   PN +T++  L  C+ V +L+ GK
Sbjct: 425 SGIEPNYVTIASILPLCARVANLQHGK 451



 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 42/134 (31%), Positives = 66/134 (49%)
 Frame = -2

Query: 402 LITMYSGCDHMEWACYVFNVFSDKDVVVWNSIISACAQHGQGVSALNFLRGMLVSDIEPN 223
           L+T Y+  D +  A  +    +    + WN +IS+  ++G    AL+  + M    I P+
Sbjct: 134 LVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPD 193

Query: 222 KVTVVSVLPACARLAALQQGKEIHQFNIRRGFDMHIAIWNGLIDMYGRCGLIKKARRVFY 43
           K T  SVL AC     +  GK++H          ++ + N L+ MY + G +  AR +F 
Sbjct: 194 KFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFVHNSLVSMYAKTGELSTARCLFE 253

Query: 42  LIPERDIFSWNTMI 1
            + ERD  SWNTMI
Sbjct: 254 NMLERDDVSWNTMI 267