BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023512
         (449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...   180   1e-43
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   179   3e-43
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   178   4e-43
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   178   4e-43
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub...   178   4e-43

>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2098

 Score =  180 bits (456), Expect = 1e-43
 Identities = 89/145 (61%), Positives = 108/145 (74%), Gaps = 1/145 (0%)
 Frame = +3

Query: 18  DTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXXLRKVLKQVEII 197
           +T+KKL+GKGYF QDGY+L+ LPVPPNCLS+PE                LRK+L++VEII
Sbjct: 194 ETKKKLAGKGYFPQDGYVLKYLPVPPNCLSVPEVSDGVSVMSSDPSITILRKLLRKVEII 253

Query: 198 KSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGGYATKAWFE 374
           KSSRSG PNFESH VE NDLQS V +YF  RGT+K +RDI+   G+ KE+   +TKAW E
Sbjct: 254 KSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVNKELTASSTKAWLE 313

Query: 375 KMKTFFISKGSGYSSRSVITGDAYK 449
           KM+T FI KGSG+SSR+VITGD YK
Sbjct: 314 KMRTLFIRKGSGFSSRNVITGDCYK 338


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  179 bits (453), Expect = 3e-43
 Identities = 90/149 (60%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
 Frame = +3

Query: 6   KFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXXLRKVLKQ 185
           +  +DTRKKL+ KGYF QDGYI++ +PVPPNCLS+P+                L+KVLKQ
Sbjct: 188 RIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPDISDGVSVMSSDLSISMLKKVLKQ 247

Query: 186 VEIIKSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRDI-KMSGIRKEVGGYATK 362
           VEIIKSSRSG PNFESH+VE  DLQS V +Y   RGTAK +RD+ +  G+ KE    +TK
Sbjct: 248 VEIIKSSRSGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARDVGERFGVHKESNDSSTK 307

Query: 363 AWFEKMKTFFISKGSGYSSRSVITGDAYK 449
           AW EKM+T FI KGSG+SSRSVITGDAYK
Sbjct: 308 AWLEKMRTLFIRKGSGFSSRSVITGDAYK 336


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score =  178 bits (452), Expect = 4e-43
 Identities = 91/149 (61%), Positives = 105/149 (70%), Gaps = 1/149 (0%)
 Frame = +3

Query: 6   KFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXXLRKVLKQ 185
           K   +TRKKL+G+GY+ QDGYILQ LPVPPNCLS+PE                L+K+LKQ
Sbjct: 186 KIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILKQ 245

Query: 186 VEIIKSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGGYATK 362
           VEIIK SRSG PNFESH+VE NDLQ  V +Y   RGT K SR I    G+ KE+   +TK
Sbjct: 246 VEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPSTK 305

Query: 363 AWFEKMKTFFISKGSGYSSRSVITGDAYK 449
           AW EKM+T FI KGSG+SSRSVITGDAYK
Sbjct: 306 AWLEKMRTLFIRKGSGFSSRSVITGDAYK 334


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
           subunit 1-like [Cucumis sativus]
          Length = 2019

 Score =  178 bits (452), Expect = 4e-43
 Identities = 91/149 (61%), Positives = 105/149 (70%), Gaps = 1/149 (0%)
 Frame = +3

Query: 6   KFSEDTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXXLRKVLKQ 185
           K   +TRKKL+G+GY+ QDGYILQ LPVPPNCLS+PE                L+K+LKQ
Sbjct: 216 KIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILKQ 275

Query: 186 VEIIKSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGGYATK 362
           VEIIK SRSG PNFESH+VE NDLQ  V +Y   RGT K SR I    G+ KE+   +TK
Sbjct: 276 VEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPSTK 335

Query: 363 AWFEKMKTFFISKGSGYSSRSVITGDAYK 449
           AW EKM+T FI KGSG+SSRSVITGDAYK
Sbjct: 336 AWLEKMRTLFIRKGSGFSSRSVITGDAYK 364


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
           max]
          Length = 2020

 Score =  178 bits (452), Expect = 4e-43
 Identities = 88/145 (60%), Positives = 108/145 (74%), Gaps = 1/145 (0%)
 Frame = +3

Query: 18  DTRKKLSGKGYFSQDGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXXLRKVLKQVEII 197
           +T+KKL+GKG+F QDGY+L+ LPVPPNCLS+PE                LRK+L++VEII
Sbjct: 194 ETKKKLAGKGFFPQDGYVLKYLPVPPNCLSVPEVSDGASVMSSDPSMTILRKLLRKVEII 253

Query: 198 KSSRSGHPNFESHKVEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGGYATKAWFE 374
           KSSRSG PNFESH VE NDLQS V +YF  RGT+K +RDI+   G+ KE+   +TKAW E
Sbjct: 254 KSSRSGEPNFESHHVEANDLQSVVDQYFQIRGTSKPARDIETHFGVNKELTASSTKAWLE 313

Query: 375 KMKTFFISKGSGYSSRSVITGDAYK 449
           KM+T FI KGSG+SSR+VITGD YK
Sbjct: 314 KMRTLFIRKGSGFSSRNVITGDCYK 338