BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023476
         (591 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533384.1| PREDICTED: DNA mismatch repair protein Msh6-...   271   5e-71
ref|XP_003620513.1| DNA mismatch repair protein Msh6-2 [Medicago...   271   8e-71
emb|CBI28088.3| unnamed protein product [Vitis vinifera]              266   3e-69
ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-...   266   3e-69
emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]   264   7e-69

>ref|XP_003533384.1| PREDICTED: DNA mismatch repair protein Msh6-2-like [Glycine max]
          Length = 1116

 Score =  271 bits (694), Expect = 5e-71
 Identities = 137/182 (75%), Positives = 154/182 (84%), Gaps = 2/182 (1%)
 Frame = -2

Query: 587  DSLVILDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHSLTKEFASHPNLTLQH 408
            DSLVILDELGRGTSTFDGYAIAYAVFRHL+EKVNCR+LFATHYHSLTKEFASHP + +QH
Sbjct: 935  DSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRMLFATHYHSLTKEFASHPRVIMQH 994

Query: 407  MACAFKPNESTFS-GDRELVFLYRLASGACPESYGLQVALMAGIPKKLVEVASKAGQMMK 231
            MACAFK    T S  D+ELVFLYRLASG CPESYGLQVALMAGIP+K V +ASKA Q MK
Sbjct: 995  MACAFKSKSDTHSMRDQELVFLYRLASGPCPESYGLQVALMAGIPEKTVNIASKASQQMK 1054

Query: 230  DSIGKNFRSSEQRSEFSTLHEGWLKTLLGFAK-KGGRSLDEDACDTFLCLYLELKSFYQK 54
             SIG++FRSSEQRSEFSTLHE WLKTL+  ++ +   SLDEDA DT +CL+ ELK+ +  
Sbjct: 1055 KSIGQSFRSSEQRSEFSTLHEEWLKTLVSISRIEDCNSLDEDALDTLICLWYELKTSFIS 1114

Query: 53   GK 48
            GK
Sbjct: 1115 GK 1116


>ref|XP_003620513.1| DNA mismatch repair protein Msh6-2 [Medicago truncatula]
            gi|355495528|gb|AES76731.1| DNA mismatch repair protein
            Msh6-2 [Medicago truncatula]
          Length = 1160

 Score =  271 bits (692), Expect = 8e-71
 Identities = 138/181 (76%), Positives = 151/181 (83%), Gaps = 2/181 (1%)
 Frame = -2

Query: 587  DSLVILDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHSLTKEFASHPNLTLQH 408
            DSLVILDELGRGTSTFDGYAIAYAVFRHL+EKVNCRLLFATHYH LTKEFASHP +T+QH
Sbjct: 979  DSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQH 1038

Query: 407  MACAFKPNESTFS-GDRELVFLYRLASGACPESYGLQVALMAGIPKKLVEVASKAGQMMK 231
            MACAFK    T S  D+ELVFLYRLA GACPESYGLQVALMAGIP+K V VASKA Q MK
Sbjct: 1039 MACAFKSKSDTLSKQDQELVFLYRLAPGACPESYGLQVALMAGIPEKTVNVASKASQQMK 1098

Query: 230  DSIGKNFRSSEQRSEFSTLHEGWLKTLLGFAK-KGGRSLDEDACDTFLCLYLELKSFYQK 54
             SIGKNFRSSEQRSEFS+LHE WLKTL+  A+ +   S D+D  DT +CL  ELKS ++ 
Sbjct: 1099 ISIGKNFRSSEQRSEFSSLHEEWLKTLMSIARIEDVESFDDDVLDTLVCLRYELKSSFKS 1158

Query: 53   G 51
            G
Sbjct: 1159 G 1159


>emb|CBI28088.3| unnamed protein product [Vitis vinifera]
          Length = 1126

 Score =  266 bits (679), Expect = 3e-69
 Identities = 131/178 (73%), Positives = 151/178 (84%), Gaps = 1/178 (0%)
 Frame = -2

Query: 587  DSLVILDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHSLTKEFASHPNLTLQH 408
            DSLV+LDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYH LTKEFASHP++TLQH
Sbjct: 935  DSLVLLDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQH 994

Query: 407  MACAFK-PNESTFSGDRELVFLYRLASGACPESYGLQVALMAGIPKKLVEVASKAGQMMK 231
            MAC F    E +  G++ELVFLY+L SGACPESYGLQVALMAG+PK++VE AS AG+MMK
Sbjct: 995  MACTFNLKGEKSSGGEQELVFLYQLTSGACPESYGLQVALMAGVPKEVVEAASTAGRMMK 1054

Query: 230  DSIGKNFRSSEQRSEFSTLHEGWLKTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 57
             SIG++FR+SEQRSEFSTLHE WLK LL  ++ G  + D+DA DT  CL+ E+KS  Q
Sbjct: 1055 QSIGESFRTSEQRSEFSTLHEEWLKALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1112


>ref|XP_002281165.1| PREDICTED: DNA mismatch repair protein Msh6-2 [Vitis vinifera]
          Length = 1122

 Score =  266 bits (679), Expect = 3e-69
 Identities = 131/178 (73%), Positives = 151/178 (84%), Gaps = 1/178 (0%)
 Frame = -2

Query: 587  DSLVILDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHSLTKEFASHPNLTLQH 408
            DSLV+LDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYH LTKEFASHP++TLQH
Sbjct: 931  DSLVLLDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQH 990

Query: 407  MACAFK-PNESTFSGDRELVFLYRLASGACPESYGLQVALMAGIPKKLVEVASKAGQMMK 231
            MAC F    E +  G++ELVFLY+L SGACPESYGLQVALMAG+PK++VE AS AG+MMK
Sbjct: 991  MACTFNLKGEKSSGGEQELVFLYQLTSGACPESYGLQVALMAGVPKEVVEAASTAGRMMK 1050

Query: 230  DSIGKNFRSSEQRSEFSTLHEGWLKTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 57
             SIG++FR+SEQRSEFSTLHE WLK LL  ++ G  + D+DA DT  CL+ E+KS  Q
Sbjct: 1051 QSIGESFRTSEQRSEFSTLHEEWLKALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1108


>emb|CAN79520.1| hypothetical protein VITISV_034626 [Vitis vinifera]
          Length = 1090

 Score =  264 bits (675), Expect = 7e-69
 Identities = 131/178 (73%), Positives = 150/178 (84%), Gaps = 1/178 (0%)
 Frame = -2

Query: 587  DSLVILDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHSLTKEFASHPNLTLQH 408
            DSLV+LDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYH LTKEFASHP++TLQH
Sbjct: 899  DSLVLLDELGRGTSTFDGYAIAYAVFRHLVEKVNCRLLFATHYHPLTKEFASHPHVTLQH 958

Query: 407  MACAFK-PNESTFSGDRELVFLYRLASGACPESYGLQVALMAGIPKKLVEVASKAGQMMK 231
            MAC F    E +  G++ELVFLY+L SGACPESYGLQVALMAG PK++VE AS AG+MMK
Sbjct: 959  MACTFNLKGEKSSGGEQELVFLYQLTSGACPESYGLQVALMAGXPKEVVEAASTAGRMMK 1018

Query: 230  DSIGKNFRSSEQRSEFSTLHEGWLKTLLGFAKKGGRSLDEDACDTFLCLYLELKSFYQ 57
             SIG++FR+SEQRSEFSTLHE WLK LL  ++ G  + D+DA DT  CL+ E+KS  Q
Sbjct: 1019 QSIGESFRTSEQRSEFSTLHEEWLKALLTVSRLGEHNFDDDAWDTLFCLWHEMKSSCQ 1076