BLASTX nr result

ID: Coptis25_contig00023425 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023425
         (704 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003560092.1| PREDICTED: B3 domain-containing protein Os07...    52   4e-11
ref|XP_002521436.1| transcription factor, putative [Ricinus comm...    51   1e-10
ref|XP_004155579.1| PREDICTED: LOW QUALITY PROTEIN: B3 domain-co...    50   3e-10
ref|XP_004134723.1| PREDICTED: B3 domain-containing protein Os07...    50   3e-10
ref|XP_003593434.1| B3 domain-containing transcription repressor...    50   5e-10

>ref|XP_003560092.1| PREDICTED: B3 domain-containing protein Os07g0563300-like
           [Brachypodium distachyon]
          Length = 989

 Score = 52.0 bits (123), Expect(2) = 4e-11
 Identities = 19/29 (65%), Positives = 26/29 (89%)
 Frame = -2

Query: 547 VHCGCAVSVESYILLDAGGVECMMCTRKN 461
           +HCGC VS+ +Y LLDAGGV+C++CTRK+
Sbjct: 176 LHCGCIVSIHAYALLDAGGVDCILCTRKS 204



 Score = 41.6 bits (96), Expect(2) = 4e-11
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 699 GVFEEGKFCEAYHKDTGGWITCKSCG 622
           G FE+G FCE +H +  GW  C++CG
Sbjct: 148 GSFEQGSFCETFHSEVAGWRNCEACG 173


>ref|XP_002521436.1| transcription factor, putative [Ricinus communis]
           gi|223539335|gb|EEF40926.1| transcription factor,
           putative [Ricinus communis]
          Length = 854

 Score = 51.2 bits (121), Expect(2) = 1e-10
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = -2

Query: 547 VHCGCAVSVESYILLDAGGVECMMCTRKN 461
           VHCGC VS  +++LLDAGG+ECM C RKN
Sbjct: 75  VHCGCIVSNNAFMLLDAGGIECMACARKN 103



 Score = 40.4 bits (93), Expect(2) = 1e-10
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 702 SGVFEEGKFCEAYHKDTGGWITCKSCG 622
           + +FEEG+FC+ +H +  GW  C+SCG
Sbjct: 46  ASMFEEGRFCDTFHLNATGWRCCESCG 72


>ref|XP_004155579.1| PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein
           Os07g0563300-like [Cucumis sativus]
          Length = 899

 Score = 49.7 bits (117), Expect(2) = 3e-10
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = -2

Query: 547 VHCGCAVSVESYILLDAGGVECMMCTRKN 461
           VHCGC VS  ++ LLD GG+ECM C RKN
Sbjct: 81  VHCGCIVSAHAFTLLDPGGIECMTCARKN 109



 Score = 40.8 bits (94), Expect(2) = 3e-10
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 702 SGVFEEGKFCEAYHKDTGGWITCKSCG 622
           +  +EEG+FCE +H +  GW  C+SCG
Sbjct: 52  ASAYEEGRFCETFHLNASGWRCCESCG 78


>ref|XP_004134723.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Cucumis
           sativus]
          Length = 896

 Score = 49.7 bits (117), Expect(2) = 3e-10
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = -2

Query: 547 VHCGCAVSVESYILLDAGGVECMMCTRKN 461
           VHCGC VS  ++ LLD GG+ECM C RKN
Sbjct: 81  VHCGCIVSAHAFTLLDPGGIECMTCARKN 109



 Score = 40.8 bits (94), Expect(2) = 3e-10
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 702 SGVFEEGKFCEAYHKDTGGWITCKSCG 622
           +  +EEG+FCE +H +  GW  C+SCG
Sbjct: 52  ASAYEEGRFCETFHLNASGWRCCESCG 78


>ref|XP_003593434.1| B3 domain-containing transcription repressor VAL2 [Medicago
           truncatula] gi|355482482|gb|AES63685.1| B3
           domain-containing transcription repressor VAL2 [Medicago
           truncatula]
          Length = 888

 Score = 50.4 bits (119), Expect(2) = 5e-10
 Identities = 29/93 (31%), Positives = 47/93 (50%)
 Frame = -2

Query: 556 RQWVHCGCAVSVESYILLDAGGVECMMCTRKNSNINMLARPSAVAGLYPQPFNVGDTSAD 377
           R+ +HCGC VS  +++LLD GG+EC  C RKN     +  PS +   +PQ  ++ +  ++
Sbjct: 78  RKRIHCGCIVSSSTFVLLDPGGIECFTCARKN-----VILPSNLP--WPQSLSLTNRLSE 130

Query: 376 HFQSSPRMKKDVDYLKWISGESSASVVRKEDPS 278
            +       +D+    W     S  V  K+ PS
Sbjct: 131 RY-------RDMSGKSWSQLAGSGPVPWKQAPS 156



 Score = 39.3 bits (90), Expect(2) = 5e-10
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -3

Query: 693 FEEGKFCEAYHKDTGGWITCKSC 625
           FEEG+FC+ +H +T GW  C++C
Sbjct: 55  FEEGRFCDIFHANTSGWRNCETC 77


Top