BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023396
         (856 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   206   7e-59
emb|CCH50966.1| T4.5 [Malus x robusta]                                232   7e-59
emb|CAN70817.1| hypothetical protein VITISV_029336 [Vitis vinifera]   224   2e-56
emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]   221   2e-55
gb|AAU90288.2| Polyprotein, putative [Solanum demissum]               211   6e-55

>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  206 bits (523), Expect(2) = 7e-59
 Identities = 108/234 (46%), Positives = 144/234 (61%), Gaps = 2/234 (0%)
 Frame = -2

Query: 846  STPLPADTTVASTPSS--LIQSQSHSAPHTEHQPTSSGTTHPMQTRSKHGIFKPKSFACQ 673
            S P  A  +V   P +  L+Q+   S  H            P +TR +HGI KPK F   
Sbjct: 853  SGPPVATESVTGVPDADPLLQAPGSSVAHQTPDSAPLSAAAP-RTRLQHGISKPKQFTDG 911

Query: 672  ATKHPISTALLTELDSKITTPTCFSQAIKHKDWREAMQSEYNALMSNHTWILVPPHPSQQ 493
              ++  + A +TE       P+  S+A+    WR AM++E+ AL  N+TW LVPP  ++ 
Sbjct: 912  TVRYGNAAARITE-------PSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRN 964

Query: 492  LVGNKWVFRIKKTTARLIDKLKARLVAKGYHQLEGINYSETFSPVAKPATIRMILTLAIQ 313
            L+  KWVF++K      ID+LKARLVAKG+ Q  GI+Y +TFSPV K +TIR++L+LA+ 
Sbjct: 965  LIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVS 1024

Query: 312  HNWGVKQLDVSNAFLHGNLKEEVYLVQPPGFQDHTRPHYVCKLQKSLYGLKQAP 151
              W ++QLDV NAFLHG L+E VY+ QPPGF D T P+Y C LQKSLYGLKQ P
Sbjct: 1025 QKWSLRQLDVQNAFLHGILEETVYMKQPPGFADTTHPNYHCHLQKSLYGLKQRP 1078



 Score = 48.5 bits (114), Expect(2) = 7e-59
 Identities = 26/51 (50%), Positives = 30/51 (58%)
 Frame = -1

Query: 154  PRAWYEKLIYTLIELGFSLSQADTSLLTRKTSIDITFILVYMDDIIPTASS 2
            PRAWY +L   L  LGF  S+AD SL          +ILVY+DDII T SS
Sbjct: 1078 PRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIIITGSS 1128


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  232 bits (592), Expect = 7e-59
 Identities = 125/254 (49%), Positives = 162/254 (63%), Gaps = 7/254 (2%)
 Frame = -2

Query: 852  NVSTPLPADTTVASTPSSLIQSQSHSAPHTEHQ-------PTSSGTTHPMQTRSKHGIFK 694
            N S P    T   +T  S  Q   H+ P +          P     TH M TR+K GI K
Sbjct: 1065 NASPPSIFSTAAHTTIPSSAQESLHTPPVSSSPAEPPPLPPPIPVNTHTMITRAKAGIHK 1124

Query: 693  PKSFACQATKHPISTALLTELDSKITTPTCFSQAIKHKDWREAMQSEYNALMSNHTWILV 514
            PK F   ATKH + + +   L +   TP+ F QA K   W EAMQ E+ AL S  TW LV
Sbjct: 1125 PKVFT--ATKHQLPSTV-DSLTALPPTPSTFLQASKSSHWMEAMQFEFQALQSTGTWELV 1181

Query: 513  PPHPSQQLVGNKWVFRIKKTTARLIDKLKARLVAKGYHQLEGINYSETFSPVAKPATIRM 334
            P H +  +VG KWVF++K      I++ KARLVAKG+HQ EG+++SETFSPVAKP TIR+
Sbjct: 1182 PNHSTYNIVGCKWVFKVKHKPDGTIERYKARLVAKGFHQQEGLDFSETFSPVAKPTTIRI 1241

Query: 333  ILTLAIQHNWGVKQLDVSNAFLHGNLKEEVYLVQPPGFQDHTRPHYVCKLQKSLYGLKQA 154
            +L++A+ + W + QLDVSNAFLHG+LKE+VY+VQPPGF D ++PH+VCKL+KSLYGLKQA
Sbjct: 1242 LLSIAVSYYWFIHQLDVSNAFLHGHLKEDVYMVQPPGFVDPSKPHHVCKLRKSLYGLKQA 1301

Query: 153  PAPGMRS*STLLLN 112
            P     +  T +L+
Sbjct: 1302 PRAWYEAFYTAILS 1315



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 30/60 (50%), Positives = 39/60 (65%)
 Frame = -1

Query: 181  KIIIWFETGPRAWYEKLIYTLIELGFSLSQADTSLLTRKTSIDITFILVYMDDIIPTASS 2
            K +   +  PRAWYE     ++ LGFS S +DTSL  ++ +  ITFILVY+DDII T SS
Sbjct: 1293 KSLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTSLFIKRDT-SITFILVYVDDIIITGSS 1351


>emb|CAN70817.1| hypothetical protein VITISV_029336 [Vitis vinifera]
          Length = 1044

 Score =  224 bits (571), Expect = 2e-56
 Identities = 122/233 (52%), Positives = 154/233 (66%)
 Frame = -2

Query: 813  STPSSLIQSQSHSAPHTEHQPTSSGTTHPMQTRSKHGIFKPKSFACQATKHPISTALLTE 634
            S  SSLI   S S  HTE  PTS   TH M TRS + IFKPK      +KH +   L   
Sbjct: 469  SLASSLIPD-SQSXVHTE--PTSH-RTHSMTTRSMNNIFKPKQLHT-VSKHYLPLPL--- 520

Query: 633  LDSKITTPTCFSQAIKHKDWREAMQSEYNALMSNHTWILVPPHPSQQLVGNKWVFRIKKT 454
                   PTC +QA+ H +W EAM SE  ALM + TW L+PP  +   VG KWVFR+K+ 
Sbjct: 521  ------EPTCVTQAVSHPEWXEAMSSELTALMRHGTWDLIPPPINCHPVGCKWVFRVKRK 574

Query: 453  TARLIDKLKARLVAKGYHQLEGINYSETFSPVAKPATIRMILTLAIQHNWGVKQLDVSNA 274
                +DK KARLVAKGY+Q  G++Y+ETFSPV KPATIR +L++AI + W +KQ+DV+NA
Sbjct: 575  VDGSVDKFKARLVAKGYNQQPGVDYNETFSPVVKPATIRTMLSIAIMNGWPLKQMDVNNA 634

Query: 273  FLHGNLKEEVYLVQPPGFQDHTRPHYVCKLQKSLYGLKQAPAPGMRS*STLLL 115
            FLHGNL E VY++QPPGF+D +RP YVC+L+K++YGLKQ P     +  T LL
Sbjct: 635  FLHGNLTETVYMMQPPGFKDLSRPDYVCRLRKAIYGLKQGPRAWYSALKTALL 687


>emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
          Length = 1442

 Score =  221 bits (562), Expect = 2e-55
 Identities = 111/224 (49%), Positives = 149/224 (66%)
 Frame = -2

Query: 822  TVASTPSSLIQSQSHSAPHTEHQPTSSGTTHPMQTRSKHGIFKPKSFACQATKHPISTAL 643
            T   T + L  SQSHS P +  Q T +   H M TRS + IFKPK      +KHPI  A+
Sbjct: 807  THTHTVADLTLSQSHSIPPSCVQ-TGNPRLHKMTTRSMNNIFKPKQLHL-VSKHPIPLAI 864

Query: 642  LTELDSKITTPTCFSQAIKHKDWREAMQSEYNALMSNHTWILVPPHPSQQLVGNKWVFRI 463
                      PTC +QA+ H  WR+AM +E  ALM + TW LVPP P+   VG KWVFR+
Sbjct: 865  ---------EPTCATQAVNHPQWRDAMSTELTALMKHGTWDLVPPLPNCTPVGCKWVFRV 915

Query: 462  KKTTARLIDKLKARLVAKGYHQLEGINYSETFSPVAKPATIRMILTLAIQHNWGVKQLDV 283
            K+     +DK K RLVAK Y Q  G++Y ETFSPV +PATIR +LT+A+ + W ++Q+D+
Sbjct: 916  KRKADGSVDKFKTRLVAKDYTQRPGLDYKETFSPVVRPATIRCVLTIAVMNGWPLRQMDI 975

Query: 282  SNAFLHGNLKEEVYLVQPPGFQDHTRPHYVCKLQKSLYGLKQAP 151
            +NAFLHG L E VY++QPPGF+D ++P +VC+L+K++YGL+QAP
Sbjct: 976  NNAFLHGTLTETVYMMQPPGFKDTSKPDHVCRLRKAIYGLRQAP 1019


>gb|AAU90288.2| Polyprotein, putative [Solanum demissum]
          Length = 1017

 Score =  211 bits (537), Expect(2) = 6e-55
 Identities = 109/203 (53%), Positives = 134/203 (66%), Gaps = 2/203 (0%)
 Frame = -2

Query: 753  PTSSGTTHP--MQTRSKHGIFKPKSFACQATKHPISTALLTELDSKITTPTCFSQAIKHK 580
            P SS T+H       S  G  KPK     +T  P S          I  P+C S+AIK  
Sbjct: 596  PHSSNTSHSGDFGNTSAVGSLKPKKPFSMSTTTPTSA---------IVEPSCHSRAIKDV 646

Query: 579  DWREAMQSEYNALMSNHTWILVPPHPSQQLVGNKWVFRIKKTTARLIDKLKARLVAKGYH 400
             WR AM  EYNAL+ N TW LVP  PSQ ++G KWVF+ K  +   +D+ KARLVAKGYH
Sbjct: 647  HWRHAMSEEYNALIQNGTWELVPLSPSQNIIGCKWVFKRKLKSDGSLDRYKARLVAKGYH 706

Query: 399  QLEGINYSETFSPVAKPATIRMILTLAIQHNWGVKQLDVSNAFLHGNLKEEVYLVQPPGF 220
            Q  G+++++TFSPV KPATIR++L+LA+ H W V QLD+SNAFLHG L E VY+ QPPGF
Sbjct: 707  QRPGLDFADTFSPVVKPATIRLLLSLAVSHQWHVTQLDISNAFLHGKLDEIVYMSQPPGF 766

Query: 219  QDHTRPHYVCKLQKSLYGLKQAP 151
             D TRP +VC L++SLYGLKQAP
Sbjct: 767  VDPTRPDHVCLLKRSLYGLKQAP 789



 Score = 30.0 bits (66), Expect(2) = 6e-55
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 154 PRAWYEKLIYTLIELGFSLSQADTSLLTRKTSIDITFI-LVYMDDIIPTASS 2
           PR W + L   L+ LGF  S+ D+SL     ++D+  + L Y++DI+   S+
Sbjct: 789 PRMWNKCLADVLLSLGFVGSKTDSSLF-YLPNVDVKLLCLDYLEDILVVGSN 839