BLASTX nr result

ID: Coptis25_contig00023349 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023349
         (1112 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36763.3| unnamed protein product [Vitis vinifera]              452   e-125
ref|XP_002512371.1| Protein YIPF1, putative [Ricinus communis] g...   448   e-123
ref|NP_198101.2| Yip1 integral membrane domain-containing protei...   447   e-123
ref|XP_002872269.1| integral membrane Yip1 family protein [Arabi...   447   e-123
ref|XP_003626299.1| Protein YIPF2 [Medicago truncatula] gi|35550...   447   e-123

>emb|CBI36763.3| unnamed protein product [Vitis vinifera]
          Length = 280

 Score =  452 bits (1164), Expect = e-125
 Identities = 219/282 (77%), Positives = 241/282 (85%)
 Frame = -2

Query: 1000 MMSSGGYTSLDNQKVSGSVPAVSDPPHTTVQFTDSNLQTFPPSEAQGKISGGYRPPRDAD 821
            MMS G YT++DNQK+SGSVPAVSDP   TV+F DSNL+TFPPSEAQGKISG  RPPRDAD
Sbjct: 1    MMSGGNYTTIDNQKISGSVPAVSDPGQVTVKFADSNLETFPPSEAQGKISGASRPPRDAD 60

Query: 820  DSFSKPVPGGSSDEPQSGGWLRMFKVAAYKPFFDVDTSDVLDRIKESLIPFRGSFSEKTA 641
            ++FSKPVPG  SDE    GWLR F VAAYKP+FDVDTSDVL+RIK+SL PF GSFSEK A
Sbjct: 61   ETFSKPVPG--SDESPPSGWLRSFTVAAYKPYFDVDTSDVLERIKDSLFPFNGSFSEKVA 118

Query: 640  TNPDLYGPFWICTTLIFVAAAIGTFVTYVAHKLQKKDWDYDINMITWSAGLFYGYATFVP 461
            +NPDLYGPFWICTTLIFVAA+IGTFVTYVAHK+QKK+WDYDIN++TWSAGLFYGY T +P
Sbjct: 119  SNPDLYGPFWICTTLIFVAASIGTFVTYVAHKIQKKEWDYDINLVTWSAGLFYGYVTIIP 178

Query: 460  LCLYVILKYFSAPSGLVQLLCLYGYSLFVFIPASCLSVVPVEEFRWVIAGVAGFMSATFV 281
            L LY+ILKYFSAPSGL QLLCLYGYSLF+FIPA CLSVVP+E FRWV+AGVAGF+SATFV
Sbjct: 179  LGLYIILKYFSAPSGLAQLLCLYGYSLFIFIPALCLSVVPLELFRWVVAGVAGFLSATFV 238

Query: 280  ALNLRAHIMSAGERWFLIVLGIFXXXXXXXXXXXXXLFTVTV 155
            ALNLRAHI SAGERWFLIV  IF             LFTVTV
Sbjct: 239  ALNLRAHIKSAGERWFLIVAAIFLLQLALAAVLKIYLFTVTV 280


>ref|XP_002512371.1| Protein YIPF1, putative [Ricinus communis]
           gi|223548332|gb|EEF49823.1| Protein YIPF1, putative
           [Ricinus communis]
          Length = 279

 Score =  448 bits (1152), Expect = e-123
 Identities = 218/281 (77%), Positives = 237/281 (84%)
 Frame = -2

Query: 997 MSSGGYTSLDNQKVSGSVPAVSDPPHTTVQFTDSNLQTFPPSEAQGKISGGYRPPRDADD 818
           M SG YTSLDNQKVSGSVPAV DP H +V+F+DS LQTFPPS AQGKISGG  PPRDADD
Sbjct: 1   MMSGNYTSLDNQKVSGSVPAVPDPGHVSVKFSDSTLQTFPPSTAQGKISGGSHPPRDADD 60

Query: 817 SFSKPVPGGSSDEPQSGGWLRMFKVAAYKPFFDVDTSDVLDRIKESLIPFRGSFSEKTAT 638
           +FSKPV G  SDEPQ GGW R F +AAYKP+FD+DT+DVL+RIK+SL PFRG+F+EKTA 
Sbjct: 61  TFSKPVSG--SDEPQQGGWFRTFTIAAYKPYFDIDTTDVLERIKDSLFPFRGTFTEKTAG 118

Query: 637 NPDLYGPFWICTTLIFVAAAIGTFVTYVAHKLQKKDWDYDINMITWSAGLFYGYATFVPL 458
           NPDLYGPFWICTTLIFVAAAIGTFVTYVAHKLQ K W+YDIN++TWSAG+FYGY T +PL
Sbjct: 119 NPDLYGPFWICTTLIFVAAAIGTFVTYVAHKLQNKKWEYDINLVTWSAGVFYGYVTIIPL 178

Query: 457 CLYVILKYFSAPSGLVQLLCLYGYSLFVFIPASCLSVVPVEEFRWVIAGVAGFMSATFVA 278
            LYVILKYFSAPSGL QL CLYGYSLFVFIPA CLS+VP+E FRWVIAGVAGFMSATFVA
Sbjct: 179 GLYVILKYFSAPSGLAQLFCLYGYSLFVFIPALCLSIVPLEIFRWVIAGVAGFMSATFVA 238

Query: 277 LNLRAHIMSAGERWFLIVLGIFXXXXXXXXXXXXXLFTVTV 155
           LNLR HI SAGERWFLIV  IF             LFTVTV
Sbjct: 239 LNLRTHIKSAGERWFLIVASIFLLQLALAVVLKLYLFTVTV 279


>ref|NP_198101.2| Yip1 integral membrane domain-containing protein [Arabidopsis
            thaliana] gi|332006310|gb|AED93693.1| Yip1 integral
            membrane domain-containing protein [Arabidopsis thaliana]
          Length = 282

 Score =  447 bits (1150), Expect = e-123
 Identities = 214/282 (75%), Positives = 242/282 (85%)
 Frame = -2

Query: 1000 MMSSGGYTSLDNQKVSGSVPAVSDPPHTTVQFTDSNLQTFPPSEAQGKISGGYRPPRDAD 821
            MMS G YT++D+QKVSGSVPAV DP H TV+F DSNLQTFPPS  QGKISGG  PPRDAD
Sbjct: 2    MMSGGSYTNIDHQKVSGSVPAVPDPGHVTVKFADSNLQTFPPSATQGKISGGTNPPRDAD 61

Query: 820  DSFSKPVPGGSSDEPQSGGWLRMFKVAAYKPFFDVDTSDVLDRIKESLIPFRGSFSEKTA 641
            D+FS+PV  G++DEPQS GWL  F V AYKP+FDVDTSDV++R+KESL PFRG+F+EKTA
Sbjct: 62   DTFSRPV-NGTTDEPQSSGWLHRFTVGAYKPYFDVDTSDVVERLKESLFPFRGTFTEKTA 120

Query: 640  TNPDLYGPFWICTTLIFVAAAIGTFVTYVAHKLQKKDWDYDINMITWSAGLFYGYATFVP 461
             NPDLYGPFWICTTLIFVAA+IGTFVTY+AHKL+K++W+YDIN++TWSAG+FYGY T VP
Sbjct: 121  NNPDLYGPFWICTTLIFVAASIGTFVTYIAHKLKKQEWNYDINLVTWSAGVFYGYVTIVP 180

Query: 460  LCLYVILKYFSAPSGLVQLLCLYGYSLFVFIPASCLSVVPVEEFRWVIAGVAGFMSATFV 281
            L LYV+LKYFSAPSGLVQL CLYGYSLFVFIPA CLSVVP+E FRWVIAG+AGFMSATFV
Sbjct: 181  LALYVVLKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGLAGFMSATFV 240

Query: 280  ALNLRAHIMSAGERWFLIVLGIFXXXXXXXXXXXXXLFTVTV 155
            ALNL+AHI SAGERWFLIV+ IF             LFTVTV
Sbjct: 241  ALNLKAHINSAGERWFLIVVSIFLLQLALSVVLKLYLFTVTV 282


>ref|XP_002872269.1| integral membrane Yip1 family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297318106|gb|EFH48528.1| integral membrane
            Yip1 family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 280

 Score =  447 bits (1150), Expect = e-123
 Identities = 214/282 (75%), Positives = 242/282 (85%)
 Frame = -2

Query: 1000 MMSSGGYTSLDNQKVSGSVPAVSDPPHTTVQFTDSNLQTFPPSEAQGKISGGYRPPRDAD 821
            MMS GGY+++D+QKVSGSVPAV DP H TV+F DSNLQTFPPS  QGKISGG  PPRD D
Sbjct: 1    MMSGGGYSNIDHQKVSGSVPAVPDPGHVTVKFADSNLQTFPPSATQGKISGGTNPPRDVD 60

Query: 820  DSFSKPVPGGSSDEPQSGGWLRMFKVAAYKPFFDVDTSDVLDRIKESLIPFRGSFSEKTA 641
            D+FS+PV G  +DEPQSGGWL  F V AYKP+FDVDTSDV++R+KESL PFRG+F+EKTA
Sbjct: 61   DTFSRPVNG--TDEPQSGGWLHRFTVGAYKPYFDVDTSDVVERLKESLFPFRGTFTEKTA 118

Query: 640  TNPDLYGPFWICTTLIFVAAAIGTFVTYVAHKLQKKDWDYDINMITWSAGLFYGYATFVP 461
             NPDLYGPFWICTTLIFVAA+IGTFVTY+AHKL+K++W+YDIN++TWSAG+FYGY T VP
Sbjct: 119  NNPDLYGPFWICTTLIFVAASIGTFVTYIAHKLKKQEWNYDINLVTWSAGVFYGYVTIVP 178

Query: 460  LCLYVILKYFSAPSGLVQLLCLYGYSLFVFIPASCLSVVPVEEFRWVIAGVAGFMSATFV 281
            L LYV+LKYFSAPSGLVQL CLYGYSLFVFIPA CLSVVP+E FRWVIAG+AGFMSATFV
Sbjct: 179  LALYVVLKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGLAGFMSATFV 238

Query: 280  ALNLRAHIMSAGERWFLIVLGIFXXXXXXXXXXXXXLFTVTV 155
            ALNL+AHI SAGERWFLIV+ IF             LFTVTV
Sbjct: 239  ALNLKAHINSAGERWFLIVVSIFLLQLALSVVLKLYLFTVTV 280


>ref|XP_003626299.1| Protein YIPF2 [Medicago truncatula] gi|355501314|gb|AES82517.1|
            Protein YIPF2 [Medicago truncatula]
          Length = 282

 Score =  447 bits (1149), Expect = e-123
 Identities = 215/283 (75%), Positives = 242/283 (85%), Gaps = 1/283 (0%)
 Frame = -2

Query: 1000 MMSSGG-YTSLDNQKVSGSVPAVSDPPHTTVQFTDSNLQTFPPSEAQGKISGGYRPPRDA 824
            MM  GG YT++D+Q++ GSVPAV DPP  TV+FTDSNLQTFPPS+AQGKI+GG RPPRDA
Sbjct: 1    MMQGGGKYTTIDSQQLQGSVPAVPDPPPVTVKFTDSNLQTFPPSQAQGKITGGSRPPRDA 60

Query: 823  DDSFSKPVPGGSSDEPQSGGWLRMFKVAAYKPFFDVDTSDVLDRIKESLIPFRGSFSEKT 644
            DDSFSKP   GSSDEPQ GGWLR F +A YKP+FDVDTSDVL+RI +SL PFRG+F+EKT
Sbjct: 61   DDSFSKPA-SGSSDEPQQGGWLRNFAIATYKPYFDVDTSDVLERIIDSLFPFRGTFNEKT 119

Query: 643  ATNPDLYGPFWICTTLIFVAAAIGTFVTYVAHKLQKKDWDYDINMITWSAGLFYGYATFV 464
            +TNPDLYGPFWICTTLIFVAA++GTFVTYVAHKL+ + WDYDIN++TWSAGLFYGY T +
Sbjct: 120  STNPDLYGPFWICTTLIFVAASMGTFVTYVAHKLKDQKWDYDINLVTWSAGLFYGYVTII 179

Query: 463  PLCLYVILKYFSAPSGLVQLLCLYGYSLFVFIPASCLSVVPVEEFRWVIAGVAGFMSATF 284
            PLCLYVILKYFS P+GLVQL CLYGYSLFVFIPA CLS+VP++ FRWVIAGVAGFMSATF
Sbjct: 180  PLCLYVILKYFSVPAGLVQLFCLYGYSLFVFIPALCLSIVPLDIFRWVIAGVAGFMSATF 239

Query: 283  VALNLRAHIMSAGERWFLIVLGIFXXXXXXXXXXXXXLFTVTV 155
            VALNLRAHI SAGERWF IV GIF             LFTV+V
Sbjct: 240  VALNLRAHIKSAGERWFFIVAGIFLLQLALAVVLKIYLFTVSV 282


Top