BLASTX nr result
ID: Coptis25_contig00023287
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00023287
(1028 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prf||1510387A retrotransposon del1-46 42 1e-10
emb|CAN69982.1| hypothetical protein VITISV_027150 [Vitis vinifera] 49 1e-10
emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera] 49 1e-10
emb|CAN82674.1| hypothetical protein VITISV_034254 [Vitis vinifera] 49 2e-10
emb|CAN61575.1| hypothetical protein VITISV_014037 [Vitis vinifera] 48 7e-10
>prf||1510387A retrotransposon del1-46
Length = 1443
Score = 42.0 bits (97), Expect(5) = 1e-10
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 175 MAAETWLNRNEKILSFFRFPDDRKVALATLMLQGKAYDWWLVEEKLRGEE----PVSWDH 342
+ A W+ KIL D++KV LA+ LQG+A WW + K+R E + WD
Sbjct: 75 LEAHRWIRHVTKILDTLGVTDEQKVILASFQLQGEAEFWW--DAKVRSREDDTTQIKWDE 132
Query: 343 F 345
F
Sbjct: 133 F 133
Score = 40.0 bits (92), Expect(5) = 1e-10
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +3
Query: 345 LEAILEEVFPGKYSASVGFRIYMELKQGNMTVFAYEARIKLLSRFAPYKL-TNELLVEKF 521
+E E+ FP + +M L QG++TV YEA+ + LSR+APY++ N V++F
Sbjct: 134 VEVFTEKFFPDTVRDDL--ERFMTLVQGSLTVAQYEAKFEELSRYAPYQVDINIRKVKRF 191
Query: 522 VSGLR 536
GL+
Sbjct: 192 EQGLK 196
Score = 23.5 bits (49), Expect(5) = 1e-10
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 128 VKDFTKLNPPEFKDAP 175
+K+F LNPP FK P
Sbjct: 57 IKEFKGLNPPIFKGDP 72
Score = 23.5 bits (49), Expect(5) = 1e-10
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 733 SSSGQPTSQTGVCYNCRRPGHIARN 807
S P S VCY+ +PGH N
Sbjct: 259 SQCPNPLSPGKVCYSYGQPGHFKSN 283
Score = 21.2 bits (43), Expect(5) = 1e-10
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +2
Query: 542 GLRSSIRMYLVGLNLKNYSDAVQQARLMETKTMRSTSL 655
GL+ SI L +K+Y + + +A +E + R +
Sbjct: 194 GLKLSITKQLSSHLIKDYREVITRALSVEKREQREAQI 231
>emb|CAN69982.1| hypothetical protein VITISV_027150 [Vitis vinifera]
Length = 1495
Score = 49.3 bits (116), Expect(3) = 1e-10
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +1
Query: 172 AMAAETWLNRNEKILSFFRFPDDRKVALATLMLQGKAYDWWLVEEKLRGEEPVSWDHF 345
A AAE WL R +IL P++R+V LAT ML KA WW +++ E ++W+ F
Sbjct: 134 AEAAEHWLRRMRRILVGLDIPEERRVGLATYMLVDKADFWWESMKRVYDTEVMTWEEF 191
Score = 34.3 bits (77), Expect(3) = 1e-10
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 360 EEVFPGKYSASVGFRI----YMELKQGNMTVFAYEARIKLLSRFAPYKLTNE-LLVEKFV 524
E +F GKY V + L QG M+V YE+R LSRFA ++ E +F
Sbjct: 192 ERIFLGKYFGEVAKHAKRMEFEHLIQGTMSVLEYESRFSELSRFALGMISEEGEKARRFQ 251
Query: 525 SGLR 536
GLR
Sbjct: 252 QGLR 255
Score = 28.9 bits (63), Expect(3) = 1e-10
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 542 GLRSSIRMYLVGLNLKNYSDAVQQARLME 628
GLR +IR LV L +++YS+ V++A L+E
Sbjct: 253 GLRPAIRNRLVPLAIRDYSELVKRALLVE 281
>emb|CAN77191.1| hypothetical protein VITISV_006389 [Vitis vinifera]
Length = 1387
Score = 48.9 bits (115), Expect(3) = 1e-10
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +1
Query: 172 AMAAETWLNRNEKILSFFRFPDDRKVALATLMLQGKAYDWWLVEEKLRGEEPVSWDHF 345
A AAE WL R +IL P++R+V LAT ML KA WW +++ E ++W+ F
Sbjct: 69 AEAAEHWLXRMRRILVGLDIPEERRVGLATYMLVDKADFWWESMKRVYDTEVMTWEEF 126
Score = 34.3 bits (77), Expect(3) = 1e-10
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 360 EEVFPGKYSASVGFRI----YMELKQGNMTVFAYEARIKLLSRFAPYKLTNE-LLVEKFV 524
E +F GKY V + L QG M+V YE+R LSRFA ++ E +F
Sbjct: 127 ERIFLGKYFGEVAKHAKRMEFEHLIQGTMSVLEYESRFSELSRFALGMISEEGEKARRFQ 186
Query: 525 SGLR 536
GLR
Sbjct: 187 QGLR 190
Score = 28.9 bits (63), Expect(3) = 1e-10
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 542 GLRSSIRMYLVGLNLKNYSDAVQQARLME 628
GLR +IR LV L +++YS+ V++A L+E
Sbjct: 188 GLRPAIRNRLVPLAIRDYSELVKRALLVE 216
>emb|CAN82674.1| hypothetical protein VITISV_034254 [Vitis vinifera]
Length = 241
Score = 48.9 bits (115), Expect(4) = 2e-10
Identities = 23/79 (29%), Positives = 42/79 (53%)
Frame = +1
Query: 175 MAAETWLNRNEKILSFFRFPDDRKVALATLMLQGKAYDWWLVEEKLRGEEPVSWDHFWXX 354
+ AE W+ +KIL P++R+V+LA+ ML+ +A +WW + + + + W F
Sbjct: 65 LEAENWMKEIKKILDVMAVPEERRVSLASFMLRDEADNWWDMIKTTQDVTKMVWMQFEEL 124
Query: 355 XXXXXXXESIQRQLALEYI 411
E+++RQ E+I
Sbjct: 125 LLSNYFPEAVRRQKRAEFI 143
Score = 34.7 bits (78), Expect(4) = 2e-10
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 408 YMELKQGNMTVFAYEARIKLLSRFAPYKLTNE-LLVEKFVSGLR 536
++ L Q NMTV Y A+ LSR+AP + +E + E+F GLR
Sbjct: 142 FIHLVQRNMTVTEYAAKFTQLSRYAPNVVADEQMRAEQFQEGLR 185
Score = 24.6 bits (52), Expect(4) = 2e-10
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 542 GLRSSIRMYLVGLNLKNYSDAVQQARLMETKTMRSTSLK 658
GLR +IR + L+ YS+ V +A ++E + + L+
Sbjct: 183 GLRLNIRAQVAPFMLRTYSEVVARALVIEREMEEAQRLR 221
Score = 22.3 bits (46), Expect(4) = 2e-10
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 128 VKDFTKLNPPEFKDAPWLLK 187
+ +F LNPP F+ P L+
Sbjct: 47 ILEFKALNPPSFRGGPNFLE 66
>emb|CAN61575.1| hypothetical protein VITISV_014037 [Vitis vinifera]
Length = 503
Score = 47.8 bits (112), Expect(3) = 7e-10
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +1
Query: 172 AMAAETWLNRNEKILSFFRFPDDRKVALATLMLQGKAYDWWLVEEKLRGEEPVSWDHF 345
A A E WL R +IL P++R+V LAT ML KA WW +++ E ++W+ F
Sbjct: 91 AEATEHWLRRMRRILVGLDIPEERRVGLATYMLVDKADFWWESMKRVYDTEVMTWEEF 148
Score = 33.1 bits (74), Expect(3) = 7e-10
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +3
Query: 360 EEVFPGKYSASVGFRI----YMELKQGNMTVFAYEARIKLLSRFAPYKLTNE-LLVEKFV 524
E +F GKY V + L QG M+V YE+R LSRFA + E +F
Sbjct: 149 ERIFLGKYFGEVAKHAKRMEFEHLIQGTMSVLEYESRFSELSRFALGMIGEEGEKARRFQ 208
Query: 525 SGLR 536
GLR
Sbjct: 209 QGLR 212
Score = 28.9 bits (63), Expect(3) = 7e-10
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 542 GLRSSIRMYLVGLNLKNYSDAVQQARLME 628
GLR +IR LV L +++YS+ V++A L+E
Sbjct: 210 GLRPAIRNRLVPLAIRDYSELVKRALLVE 238