BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023248
         (1359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301697.1| predicted protein [Populus trichocarpa] gi|2...   533   e-149
ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containi...   525   e-147
emb|CBI33534.3| unnamed protein product [Vitis vinifera]              523   e-146
ref|XP_002532468.1| pentatricopeptide repeat-containing protein,...   515   e-143
ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containi...   493   e-137

>ref|XP_002301697.1| predicted protein [Populus trichocarpa] gi|222843423|gb|EEE80970.1|
            predicted protein [Populus trichocarpa]
          Length = 499

 Score =  533 bits (1372), Expect = e-149
 Identities = 257/410 (62%), Positives = 319/410 (77%)
 Frame = -3

Query: 1243 KRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLEDTGIRVTTDDVEQVLKLSYAHP 1064
            K+P+F SYL+TPNLPP IKL+CEI+ANTP+ NVE+ L+ T IRV   DVEQVLKLSY+ P
Sbjct: 35   KKPSFQSYLETPNLPPTIKLLCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSP 94

Query: 1063 GPAVKFFRWSGKQLNDNHSPYSWNLVVDLLGSNSLFEAMWDAIKSMKKEGLLSLATFASV 884
            G AVKFFRW+G QLND HSPYSWNLVVDLLG NS+F+AMW AIKSMK+E L+SLATFASV
Sbjct: 95   GSAVKFFRWAGLQLNDKHSPYSWNLVVDLLGKNSMFDAMWGAIKSMKRENLVSLATFASV 154

Query: 883  FSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSAICRQGKTVKAWEFLHIAKEKIR 704
            FSSYV+ + V+EA+MTFEVMDQYGC R+VVALNSLLSAICR+G+T  A EFLH+AK +I 
Sbjct: 155  FSSYVIVDRVKEAIMTFEVMDQYGCTRNVVALNSLLSAICREGRTFDAVEFLHVAKNRIL 214

Query: 703  PDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPVNVPGYDAFLNTLLKSHHDGVRE 524
            PD D+YAILLEGWE E +V +A  TF +MV   GWDP NVP YD FL+TLL   +DG+RE
Sbjct: 215  PDADSYAILLEGWEKEMNVASARTTFADMVSMVGWDPRNVPAYDTFLSTLLMG-YDGLRE 273

Query: 523  TMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASNVWETMVRLNGCKPDTEMYNGMM 344
             MK FD MK   CFPG+KFFR AL E LK +++R A  +WET+V   G +PD ++YN M+
Sbjct: 274  AMKHFDTMKDRGCFPGVKFFRLALEECLKCNDVRAAMLIWETLVARVGFRPDIQLYNLMI 333

Query: 343  SLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVVFNEMVKNEFI 164
             + CY NQ D+A + LDEM++ G FPDS+TY+ L ++++K +K++E S V NEM+KNEF 
Sbjct: 334  GIHCYDNQTDIANKFLDEMIYNGVFPDSQTYNVLFQYLIKYKKLKEASFVLNEMIKNEFF 393

Query: 163  PTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGWEIAGNKLIVGLR 14
            P   NC+AA+  Y+D  +P MAIK+WKCM+EN      E AGN L+V LR
Sbjct: 394  PNKTNCNAAIKAYMDSKEPYMAIKVWKCMMENYGESDLEEAGNMLVVELR 443


>ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Vitis vinifera]
          Length = 502

 Score =  525 bits (1353), Expect = e-147
 Identities = 256/435 (58%), Positives = 329/435 (75%)
 Frame = -3

Query: 1306 RTKKRPTSQPDPSPNKKPHEKKRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLED 1127
            R K+  +S  D + + +    KRP+FP+YL+TPNL PK++L+CEI+ANTP+  VE  L D
Sbjct: 23   RNKRHSSSTTDSATHHQT--PKRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHD 80

Query: 1126 TGIRVTTDDVEQVLKLSYAHPGPAVKFFRWSGKQLNDNHSPYSWNLVVDLLGSNSLFEAM 947
            T IRV+ +DVE  LKLSY  PG AVKFFRWSG QLNDNHSPYSWNLVVD+LG N LF+AM
Sbjct: 81   TAIRVSPEDVEDSLKLSYGFPGSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAM 140

Query: 946  WDAIKSMKKEGLLSLATFASVFSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSAI 767
            WDA+KSMKK+GLLSLATFAS+FSSYV+ + V EA+MTF+VM+QYGC RD+VALNSLLSAI
Sbjct: 141  WDAVKSMKKQGLLSLATFASIFSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAI 200

Query: 766  CRQGKTVKAWEFLHIAKEKIRPDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPVN 587
            CR G+TV+A EFL   +  IRPD DTYAILLEGWESEG+ G A +TF+EMV+  GWDP N
Sbjct: 201  CRDGRTVQAAEFLRNVRGLIRPDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGN 260

Query: 586  VPGYDAFLNTLLKSHHDGVRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASNV 407
            V  YD+FLN LL    DG RE MKFF++M+  +C PGM+F+R  L E +KTS+ + A  +
Sbjct: 261  VSAYDSFLNALLHG-PDGRREAMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLL 319

Query: 406  WETMVRLNGCKPDTEMYNGMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFML 227
            W+TM+  N C+PDTEMYN M++L C  +   +A  +LDEMV  GAFPDS+TY+ L +F++
Sbjct: 320  WQTMLSRNICRPDTEMYNSMIALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLI 379

Query: 226  KLRKVREVSVVFNEMVKNEFIPTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGWE 47
            + RK+ E   +F+EMV+NE +P   NC+AA+ +Y+D+GD   AIK+WK ++EN    G E
Sbjct: 380  RRRKLEEAFSIFSEMVQNECVPDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENH-DSGLE 438

Query: 46   IAGNKLIVGLRDLNR 2
              GN L+ GLRD +R
Sbjct: 439  ETGNLLVTGLRDHDR 453


>emb|CBI33534.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  523 bits (1348), Expect = e-146
 Identities = 252/414 (60%), Positives = 320/414 (77%)
 Frame = -3

Query: 1243 KRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLEDTGIRVTTDDVEQVLKLSYAHP 1064
            KRP+FP+YL+TPNL PK++L+CEI+ANTP+  VE  L DT IRV+ +DVE  LKLSY  P
Sbjct: 46   KRPSFPTYLETPNLSPKVRLLCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFP 105

Query: 1063 GPAVKFFRWSGKQLNDNHSPYSWNLVVDLLGSNSLFEAMWDAIKSMKKEGLLSLATFASV 884
            G AVKFFRWSG QLNDNHSPYSWNLVVD+LG N LF+AMWDA+KSMKK+GLLSLATFAS+
Sbjct: 106  GSAVKFFRWSGHQLNDNHSPYSWNLVVDMLGKNFLFDAMWDAVKSMKKQGLLSLATFASI 165

Query: 883  FSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSAICRQGKTVKAWEFLHIAKEKIR 704
            FSSYV+ + V EA+MTF+VM+QYGC RD+VALNSLLSAICR G+TV+A EFL   +  IR
Sbjct: 166  FSSYVIADRVREAIMTFDVMEQYGCPRDIVALNSLLSAICRDGRTVQAAEFLRNVRGLIR 225

Query: 703  PDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPVNVPGYDAFLNTLLKSHHDGVRE 524
            PD DTYAILLEGWESEG+ G A +TF+EMV+  GWDP NV  YD+FLN LL    DG RE
Sbjct: 226  PDADTYAILLEGWESEGNCGAARQTFDEMVMDIGWDPGNVSAYDSFLNALLHG-PDGRRE 284

Query: 523  TMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASNVWETMVRLNGCKPDTEMYNGMM 344
             MKFF++M+  +C PGM+F+R  L E +KTS+ + A  +W+TM+  N C+PDTEMYN M+
Sbjct: 285  AMKFFEIMRDRQCSPGMRFYRIGLQECVKTSDSKGAQLLWQTMLSRNICRPDTEMYNSMI 344

Query: 343  SLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVVFNEMVKNEFI 164
            +L C  +   +A  +LDEMV  GAFPDS+TY+ L +F+++ RK+ E   +F+EMV+NE +
Sbjct: 345  ALHCSCDNIVMARGMLDEMVCNGAFPDSETYNVLFRFLIRRRKLEEAFSIFSEMVQNECV 404

Query: 163  PTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGWEIAGNKLIVGLRDLNR 2
            P   NC+AA+ +Y+D+GD   AIK+WK ++EN    G E  GN L+ GLRD +R
Sbjct: 405  PDLTNCNAAVRIYLDLGDVYKAIKVWKYIIENH-DSGLEETGNLLVTGLRDHDR 457


>ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527826|gb|EEF29924.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 510

 Score =  515 bits (1326), Expect = e-143
 Identities = 251/416 (60%), Positives = 315/416 (75%)
 Frame = -3

Query: 1252 HEKKRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLEDTGIRVTTDDVEQVLKLSY 1073
            +  K PTFPSYL+TPNL PKIKL+CEI+A  P+  VET L++TG+ V+  DVEQV+KLSY
Sbjct: 47   YPNKHPTFPSYLETPNLSPKIKLLCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSY 106

Query: 1072 AHPGPAVKFFRWSGKQLNDNHSPYSWNLVVDLLGSNSLFEAMWDAIKSMKKEGLLSLATF 893
            + PGPAVKFFRW+G +L DNHSPYSWNLVVDLLG N LF+AMWDAIKSMK + L+SLATF
Sbjct: 107  SFPGPAVKFFRWAGFRLQDNHSPYSWNLVVDLLGKNCLFDAMWDAIKSMKSKELVSLATF 166

Query: 892  ASVFSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSAICRQGKTVKAWEFLHIAKE 713
            ASVF SYV    V++A+ TFEVM+QYG  RDVVALNSLLSAICR GKTV A +FL +AK 
Sbjct: 167  ASVFGSYVTAGRVKDAIFTFEVMNQYGVVRDVVALNSLLSAICRDGKTVDAVDFLFVAKN 226

Query: 712  KIRPDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPVNVPGYDAFLNTLLKSHHDG 533
             I+PD DT+AILLEGWE E ++ N+ +TF+EMV + GWDP N P YD FL TLL     G
Sbjct: 227  SIKPDADTFAILLEGWEKELNLVNSRQTFDEMVREIGWDPANTPAYDTFLCTLLMG-RIG 285

Query: 532  VRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASNVWETMVRLNGCKPDTEMYN 353
              E ++F ++MK  RC PGM+FFR+A+ E LK +++R A  +WE M+  NG +PD EMYN
Sbjct: 286  FNEVIEFLEIMKEKRCCPGMRFFRAAIEECLKVNDVRVAGLIWEVMMETNGFRPDIEMYN 345

Query: 352  GMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFMLKLRKVREVSVVFNEMVKN 173
             M+SL CY N  D+A R LDEMV+ G FPD +TY+ L +F++K RK++E SV+FNEM+KN
Sbjct: 346  LMISLYCYTNNTDIALRFLDEMVYNGVFPDRQTYNLLFQFLIKSRKLKEASVLFNEMIKN 405

Query: 172  EFIPTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGWEIAGNKLIVGLRDLN 5
            E +P   NCSAA+ +++   DP MAIK+WKCM+EN  +   E  GN LIV L DL+
Sbjct: 406  ECLPNQANCSAAVRVFMHSKDPYMAIKVWKCMIENYEL-DLEETGNLLIVELCDLH 460


>ref|XP_003552963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Glycine max]
          Length = 485

 Score =  493 bits (1270), Expect = e-137
 Identities = 249/436 (57%), Positives = 311/436 (71%), Gaps = 1/436 (0%)
 Frame = -3

Query: 1306 RTKKRPTSQPDPSP-NKKPHEKKRPTFPSYLQTPNLPPKIKLVCEILANTPTPNVETTLE 1130
            R K+   S   PSP +KKP      TFPS+   PNLP  IK +C ++A T   +VE +L+
Sbjct: 8    RRKRAHPSSSSPSPISKKPQ-----TFPSFQDIPNLPSNIKSLCHLIATTSAASVEHSLQ 62

Query: 1129 DTGIRVTTDDVEQVLKLSYAHPGPAVKFFRWSGKQLNDNHSPYSWNLVVDLLGSNSLFEA 950
               I VT  DVE+VLKLSY  PG AVKFFRWSG+ LNDNH+PYSWNLVVD+LG N  F+A
Sbjct: 63   SAAISVTPHDVEEVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDA 122

Query: 949  MWDAIKSMKKEGLLSLATFASVFSSYVVGECVEEAMMTFEVMDQYGCARDVVALNSLLSA 770
            MWDAIKSM KEGLLSLATFASVFSSYV  + + EA+M FE+MD Y   RDVVALNSLLSA
Sbjct: 123  MWDAIKSMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYCVVRDVVALNSLLSA 182

Query: 769  ICRQGKTVKAWEFLHIAKEKIRPDGDTYAILLEGWESEGDVGNAHKTFEEMVIQFGWDPV 590
            IC  G+T+ A ++L +AK+ +RPD DTYAIL+EGWE E  V  A +TF EMVI+ GWDP+
Sbjct: 183  ICSNGRTLDACDYLQVAKKLVRPDTDTYAILMEGWEGENGVVGAKETFAEMVIEIGWDPL 242

Query: 589  NVPGYDAFLNTLLKSHHDGVRETMKFFDVMKSNRCFPGMKFFRSALNEFLKTSNLRDASN 410
            NVP YD+FL TL++   DG+ E +KF D M+  RCFPG++F ++AL+E +K+ ++R A  
Sbjct: 243  NVPAYDSFLCTLVRG-PDGLLEAIKFVDSMRDRRCFPGVRFLKAALDECVKSHDVRTAEF 301

Query: 409  VWETMVRLNGCKPDTEMYNGMMSLQCYLNQADVAYRLLDEMVFYGAFPDSKTYSTLLKFM 230
             WE +V     +P  EMYN M+ L CY    D A R+LDEMV+ GAFPD +TY+ L KF+
Sbjct: 302  FWEVLVVGKVVQPTAEMYNLMIGLCCYRGDTDAARRMLDEMVYQGAFPDVETYNLLFKFL 361

Query: 229  LKLRKVREVSVVFNEMVKNEFIPTHENCSAALTLYVDIGDPDMAIKIWKCMLENEMMPGW 50
            +K RK+RE SVVF EMVKNE +P  +NC AA+  YVD G+P MAIK+WK ++EN      
Sbjct: 362  IKGRKLREASVVFAEMVKNECVPEQDNCDAAVKAYVDCGEPVMAIKVWKYLVEN-YKKDL 420

Query: 49   EIAGNKLIVGLRDLNR 2
            E   N L+VGLRDLNR
Sbjct: 421  ERTANFLVVGLRDLNR 436