BLASTX nr result
ID: Coptis25_contig00023162
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00023162
(397 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi... 139 2e-31
ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containi... 139 2e-31
ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 136 2e-30
ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containi... 136 2e-30
ref|XP_003628741.1| Pentatricopeptide repeat-containing protein ... 134 1e-29
>ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 139 bits (350), Expect = 2e-31
Identities = 62/131 (47%), Positives = 91/131 (69%)
Frame = -3
Query: 395 RKVFDRAPVKDILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRIN 216
RK+FD A + D++++N+++ GY K + F+ MPE+DVVSW+S++ G QN +
Sbjct: 431 RKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD 490
Query: 215 EAMLFFNRMQMENVKPNMVTLVSVLSACGQVGALDMGKWVHTYIDRSGIGLNAIVGTTLV 36
E + F MQM KP+ TLVSV+SAC ++ AL+ GKWVH YI R+G+ +N I+GTTL+
Sbjct: 491 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLI 550
Query: 35 DMYCKCGELES 3
DMY KCG +E+
Sbjct: 551 DMYMKCGCVET 561
Score = 64.3 bits (155), Expect = 1e-08
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 31/159 (19%)
Frame = -3
Query: 392 KVFDRAPVKDILTYNTLLGGYAKYCEAEFVLQFFNEMPER-------------------- 273
+VF+ + V D +++N++L GY + E +++MPER
Sbjct: 269 RVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVE 328
Query: 272 -----------DVVSWNSVLGGLVQNKRINEAMLFFNRMQMENVKPNMVTLVSVLSACGQ 126
D+V+W++++ QN+ EA+ F M V + V VS LSAC
Sbjct: 329 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 388
Query: 125 VGALDMGKWVHTYIDRSGIGLNAIVGTTLVDMYCKCGEL 9
+ ++MGK +H+ + G + L+ MY KCG++
Sbjct: 389 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDI 427
Score = 56.2 bits (134), Expect = 3e-06
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = -3
Query: 365 DILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEAMLFFNRMQ 186
+++ TL+ Y K E L+ F M E+ + +WN+++ GL N + ++ F+ M+
Sbjct: 542 NVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMK 601
Query: 185 MENVKPNMVTLVSVLSACGQVGALDMGK-WVHTYIDRSGIGLNAIVGTTLVDMYCKCGEL 9
+V PN +T + VL AC +G +D G+ ++ I I N +VD+ + G+L
Sbjct: 602 KCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKL 661
Query: 8 E 6
+
Sbjct: 662 Q 662
>ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 139 bits (350), Expect = 2e-31
Identities = 62/131 (47%), Positives = 91/131 (69%)
Frame = -3
Query: 395 RKVFDRAPVKDILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRIN 216
RK+FD A + D++++N+++ GY K + F+ MPE+DVVSW+S++ G QN +
Sbjct: 296 RKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD 355
Query: 215 EAMLFFNRMQMENVKPNMVTLVSVLSACGQVGALDMGKWVHTYIDRSGIGLNAIVGTTLV 36
E + F MQM KP+ TLVSV+SAC ++ AL+ GKWVH YI R+G+ +N I+GTTL+
Sbjct: 356 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLI 415
Query: 35 DMYCKCGELES 3
DMY KCG +E+
Sbjct: 416 DMYMKCGCVET 426
Score = 64.3 bits (155), Expect = 1e-08
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 31/159 (19%)
Frame = -3
Query: 392 KVFDRAPVKDILTYNTLLGGYAKYCEAEFVLQFFNEMPER-------------------- 273
+VF+ + V D +++N++L GY + E +++MPER
Sbjct: 134 RVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVE 193
Query: 272 -----------DVVSWNSVLGGLVQNKRINEAMLFFNRMQMENVKPNMVTLVSVLSACGQ 126
D+V+W++++ QN+ EA+ F M V + V VS LSAC
Sbjct: 194 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 253
Query: 125 VGALDMGKWVHTYIDRSGIGLNAIVGTTLVDMYCKCGEL 9
+ ++MGK +H+ + G + L+ MY KCG++
Sbjct: 254 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDI 292
Score = 56.2 bits (134), Expect = 3e-06
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = -3
Query: 365 DILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEAMLFFNRMQ 186
+++ TL+ Y K E L+ F M E+ + +WN+++ GL N + ++ F+ M+
Sbjct: 407 NVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMK 466
Query: 185 MENVKPNMVTLVSVLSACGQVGALDMGK-WVHTYIDRSGIGLNAIVGTTLVDMYCKCGEL 9
+V PN +T + VL AC +G +D G+ ++ I I N +VD+ + G+L
Sbjct: 467 KCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKL 526
Query: 8 E 6
+
Sbjct: 527 Q 527
>ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 136 bits (343), Expect = 2e-30
Identities = 59/128 (46%), Positives = 91/128 (71%)
Frame = -3
Query: 389 VFDRAPVKDILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEA 210
+F+ K ++++ T++ GYAK+ E ++ FNEMPE+DVV WN+++GG VQ KR EA
Sbjct: 313 LFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEA 372
Query: 209 MLFFNRMQMENVKPNMVTLVSVLSACGQVGALDMGKWVHTYIDRSGIGLNAIVGTTLVDM 30
+ F+ MQ +V P+ +T+V+ LSAC Q+GALD+G W+H Y+D+ + +N +GT LVDM
Sbjct: 373 LALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDM 432
Query: 29 YCKCGELE 6
Y KCG ++
Sbjct: 433 YAKCGNIK 440
Score = 75.1 bits (183), Expect = 5e-12
Identities = 39/121 (32%), Positives = 66/121 (54%)
Frame = -3
Query: 365 DILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEAMLFFNRMQ 186
D+ +N ++ E + F+E RD+VSWNS++ G V+ +EA + +M
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMG 248
Query: 185 MENVKPNMVTLVSVLSACGQVGALDMGKWVHTYIDRSGIGLNAIVGTTLVDMYCKCGELE 6
NV P+ VT++ V+SA Q+ L +G+ +H I+ G+ L + L+DMY KC +E
Sbjct: 249 ELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIE 308
Query: 5 S 3
+
Sbjct: 309 A 309
Score = 59.7 bits (143), Expect = 2e-07
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Frame = -3
Query: 368 KDILTYNTLLGG-----YAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEAML 204
K LT N LG YAK + +Q F EMP R+ ++W +++ GL + + + A+
Sbjct: 416 KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAIS 475
Query: 203 FFNRMQMENVKPNMVTLVSVLSACGQVGALDMGK-WVHTYIDRSGIGLNAIVGTTLVDMY 27
+F+ M + P+ +T + VLSAC G +D G+ + + + GI + LVD+
Sbjct: 476 YFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLL 535
Query: 26 CKCGELE 6
+ G LE
Sbjct: 536 GRAGFLE 542
>ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 136 bits (343), Expect = 2e-30
Identities = 59/128 (46%), Positives = 91/128 (71%)
Frame = -3
Query: 389 VFDRAPVKDILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEA 210
+F+ K ++++ T++ GYAK+ E ++ FNEMPE+DVV WN+++GG VQ KR EA
Sbjct: 313 LFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEA 372
Query: 209 MLFFNRMQMENVKPNMVTLVSVLSACGQVGALDMGKWVHTYIDRSGIGLNAIVGTTLVDM 30
+ F+ MQ +V P+ +T+V+ LSAC Q+GALD+G W+H Y+D+ + +N +GT LVDM
Sbjct: 373 LALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDM 432
Query: 29 YCKCGELE 6
Y KCG ++
Sbjct: 433 YAKCGNIK 440
Score = 75.1 bits (183), Expect = 5e-12
Identities = 39/121 (32%), Positives = 66/121 (54%)
Frame = -3
Query: 365 DILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEAMLFFNRMQ 186
D+ +N ++ E + F+E RD+VSWNS++ G V+ +EA + +M
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMG 248
Query: 185 MENVKPNMVTLVSVLSACGQVGALDMGKWVHTYIDRSGIGLNAIVGTTLVDMYCKCGELE 6
NV P+ VT++ V+SA Q+ L +G+ +H I+ G+ L + L+DMY KC +E
Sbjct: 249 ELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIE 308
Query: 5 S 3
+
Sbjct: 309 A 309
Score = 59.7 bits (143), Expect = 2e-07
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Frame = -3
Query: 368 KDILTYNTLLGG-----YAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEAML 204
K LT N LG YAK + +Q F EMP R+ ++W +++ GL + + + A+
Sbjct: 416 KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAIS 475
Query: 203 FFNRMQMENVKPNMVTLVSVLSACGQVGALDMGK-WVHTYIDRSGIGLNAIVGTTLVDMY 27
+F+ M + P+ +T + VLSAC G +D G+ + + + GI + LVD+
Sbjct: 476 YFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLL 535
Query: 26 CKCGELE 6
+ G LE
Sbjct: 536 GRAGFLE 542
>ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 758
Score = 134 bits (336), Expect = 1e-29
Identities = 65/132 (49%), Positives = 90/132 (68%), Gaps = 1/132 (0%)
Frame = -3
Query: 395 RKVFDRAPVKDILTYNTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRIN 216
R++FD+ P +D +++N +L GYA E E + F+EMPER+V SWN ++GG V+N +
Sbjct: 227 RELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFS 286
Query: 215 EAMLFFNRMQME-NVKPNMVTLVSVLSACGQVGALDMGKWVHTYIDRSGIGLNAIVGTTL 39
E + F RM +E +V PN TLV+VLSAC ++GALDMGKWVH Y + G N VG L
Sbjct: 287 ETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVL 346
Query: 38 VDMYCKCGELES 3
+DMY KCG +E+
Sbjct: 347 IDMYAKCGVIEN 358
Score = 60.8 bits (146), Expect = 1e-07
Identities = 27/98 (27%), Positives = 53/98 (54%)
Frame = -3
Query: 299 QFFNEMPERDVVSWNSVLGGLVQNKRINEAMLFFNRMQMENVKPNMVTLVSVLSACGQVG 120
+ F+++P+ + +WN++ G +QN + ++ F + PN T ++ +CG++
Sbjct: 65 KLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLE 124
Query: 119 ALDMGKWVHTYIDRSGIGLNAIVGTTLVDMYCKCGELE 6
+ G+ VH + G N+ V T+L+DMY K G +E
Sbjct: 125 GVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVE 162
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = -3
Query: 350 NTLLGGYAKYCEAEFVLQFFNEMPERDVVSWNSVLGGLVQNKRINEAMLFFNRMQMENVK 171
N L+ YAK E + FN + +D++SWN+++ GL + +A+ F+RM+ E +
Sbjct: 344 NVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEE 403
Query: 170 PNMVTLVSVLSACGQVGALDMG 105
P+ VT V +LSAC +G + G
Sbjct: 404 PDGVTFVGILSACTHMGLVKDG 425