BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00023077
         (1578 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containi...   615   e-173
ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containi...   608   e-171
ref|XP_002522032.1| pentatricopeptide repeat-containing protein,...   572   e-161
ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|2...   566   e-159
ref|XP_002871814.1| pentatricopeptide repeat-containing protein ...   565   e-158

>ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial [Vitis vinifera]
            gi|296085168|emb|CBI28663.3| unnamed protein product
            [Vitis vinifera]
          Length = 454

 Score =  615 bits (1586), Expect = e-173
 Identities = 303/461 (65%), Positives = 365/461 (79%), Gaps = 1/461 (0%)
 Frame = -3

Query: 1489 PSFFLLPHFSPKTLNPNPNFKFLKTLTTQSHQIPPTAQKHSREGVSNDDYFAAIHHISNI 1310
            P F LL   SP +    P    LKTLTT +  +  T           DDYFA +HHIS I
Sbjct: 7    PIFHLLIRNSPAS----PILTHLKTLTTITTHLQNTITS------KKDDYFAVVHHISAI 56

Query: 1309 VRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWARNQPRYEPTTLEFEEL 1130
            VRRDFY+ERTL K+ I++TS+LVYRVLRSC  SG  S RFFNWAR+   Y+PTTLE+EEL
Sbjct: 57   VRRDFYLERTLNKLPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEEL 116

Query: 1129 IKILGKNKNWETMWKVAEQMKKMGFVLTPDTFSMIIESYGKNGLVDKAVEVFNRMKN-FN 953
            +K L + K ++ MWK+A QM+     L+P   S IIE +GK+GLVD+AVEVFN+ K+  N
Sbjct: 117  LKTLARTKQFQPMWKIAHQMQ----TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALN 172

Query: 952  CEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTYSILVNGWCSAGKLKEAQ 773
            C QTI VYNSLLFALCEVK F GAYALIRR+IRKG  P+K+TYS+LVNGWC+AGK+KEAQ
Sbjct: 173  CPQTIEVYNSLLFALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQ 232

Query: 772  DFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLPDITTFNSLLEAI 593
            DFLEEMSRKGFNPPVRGRDLL+DGLL+AGYLEAAK +VRKMTKEG  PD+ T NS+LEAI
Sbjct: 233  DFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAI 292

Query: 592  CEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMDEAFRFLYCSIEDGHKPFP 413
            C+ GE EFC+ ++ DVC+LG+ P++ TYK+MIPA  K GR+DEAFR L+ SIEDGH+PFP
Sbjct: 293  CKAGEAEFCIDIYNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFP 352

Query: 412  SLYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLIKMCARGGRFVEAANYLME 233
            SLYAPI+K LCR GQFDDAF FFS+MK +GHPPNRPVY MLI MC RGGRFV+AANYL+E
Sbjct: 353  SLYAPIIKALCRNGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVE 412

Query: 232  MIEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISLRG 110
            M E+ L+P  + FD++TDGLK+ GKHDLA++IEQ+E+SLRG
Sbjct: 413  MTELNLTPISRCFDMVTDGLKNCGKHDLARKIEQLEVSLRG 453


>ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
            gi|449518358|ref|XP_004166209.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  608 bits (1567), Expect = e-171
 Identities = 288/418 (68%), Positives = 349/418 (83%), Gaps = 3/418 (0%)
 Frame = -3

Query: 1354 SNDDYFAAIHHISNIVRRDFYMERTLQKMQI-NMTSELVYRVLRSCNKSGINSFRFFNWA 1178
            S DDYFAAIHHIS+IVRRDFYMERTL K++I N+ SELV+RVLR+C+ SG  SFRFFNWA
Sbjct: 37   SKDDYFAAIHHISHIVRRDFYMERTLNKLRISNLNSELVFRVLRACSNSGTESFRFFNWA 96

Query: 1177 -RNQPRYEPTTLEFEELIKILGKNKNWETMWKVAEQMKKMGFVLTPDTFSMIIESYGKNG 1001
              + P Y+PTTLEFEEL+K L + + + TMWKV  QMK     ++P+T S II+ YGK G
Sbjct: 97   CSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQG 156

Query: 1000 LVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTY 824
            LVD AV +FN+  K+ +C QT+ VYN+LLFALCEVK F GAYALIRR+IRKG  PDK+TY
Sbjct: 157  LVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTY 216

Query: 823  SILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTK 644
              LV GWCSAGK+KEAQ+FLEEMS+KGFNPP+RGRDLL++GLL+AGYLE+AK +VRKMTK
Sbjct: 217  GTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTK 276

Query: 643  EGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMDE 464
            EG +PDI TFNSL++ IC  GEV+FC+ +F +VCKLGL PDI+TYK++IPA SK+GR+DE
Sbjct: 277  EGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDE 336

Query: 463  AFRFLYCSIEDGHKPFPSLYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLIK 284
            AFR L+C IEDGH PFPSLY PILKG+C+ GQFDDAF FF +MK +GHPPNRPVY MLI 
Sbjct: 337  AFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAFCFFGDMKHKGHPPNRPVYTMLIT 396

Query: 283  MCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISLRG 110
            MC RGGRFV+AANYLMEM E+ L P  + FD++TDGLK+ GKHDLAK+IEQ+E+S+RG
Sbjct: 397  MCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLEVSIRG 454


>ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538836|gb|EEF40436.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 451

 Score =  572 bits (1475), Expect = e-161
 Identities = 282/458 (61%), Positives = 353/458 (77%), Gaps = 3/458 (0%)
 Frame = -3

Query: 1480 FLLPHFSPK-TLNPNPNFKFLKTLTTQSHQIPPTAQKHSREGVSNDDYFAAIHHISNIVR 1304
            F+LP  +   TL P  + K L + +T +               + D YFA IHHI+NIVR
Sbjct: 8    FILPKTTATVTLQPLRHLKVLASTSTNN---------------TKDAYFALIHHITNIVR 52

Query: 1303 RDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWARNQPRYEPTTLEFEELIK 1124
            RDFY ERTL K+   +TSELV+RVLR+C++S   S RFFNW+R    Y PT++E+EELIK
Sbjct: 53   RDFYPERTLNKLNAPVTSELVFRVLRACSRSPTESLRFFNWSRAY--YTPTSIEYEELIK 110

Query: 1123 ILGKNKNWETMWKVAEQMKKMG--FVLTPDTFSMIIESYGKNGLVDKAVEVFNRMKNFNC 950
            IL K+K + +MWK+  QMK     F ++ +T   IIE YG++GL+D+AVEVFN+  + NC
Sbjct: 111  ILAKSKRYSSMWKLITQMKDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNC 170

Query: 949  EQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTYSILVNGWCSAGKLKEAQD 770
            EQ + +YNSLLFALCEVK F GAYAL+RRLIRKG  P+K TYS+LVNGWCS GK KEAQ 
Sbjct: 171  EQNVDIYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQL 230

Query: 769  FLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLPDITTFNSLLEAIC 590
            FLEEMS+KGFNPPVRGRDLLI+GLL+AGY E+AK +V KM+KEGF+PD+ TFN L+EAIC
Sbjct: 231  FLEEMSKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKMSKEGFVPDVNTFNCLIEAIC 290

Query: 589  EGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMDEAFRFLYCSIEDGHKPFPS 410
              GEV+FCV ++  + KLG  PDI++YK++IPAVSK+G++DEAF+ L  SIEDGHKPFP 
Sbjct: 291  NSGEVDFCVDMYYSLRKLGFCPDINSYKILIPAVSKVGKIDEAFKLLNNSIEDGHKPFPG 350

Query: 409  LYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLIKMCARGGRFVEAANYLMEM 230
            LYAPI+KG+CR GQFDDAF FF  MK +GHPPNRPVY MLI MC RGG++VEAANYL+EM
Sbjct: 351  LYAPIIKGMCRRGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRGGKYVEAANYLVEM 410

Query: 229  IEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISL 116
             EM L+P  + FD++TDGLK+ GKHDLAKRIEQ+E+S+
Sbjct: 411  TEMGLTPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSV 448


>ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|222862244|gb|EEE99750.1|
            predicted protein [Populus trichocarpa]
          Length = 422

 Score =  567 bits (1460), Expect = e-159
 Identities = 273/419 (65%), Positives = 344/419 (82%), Gaps = 4/419 (0%)
 Frame = -3

Query: 1354 SNDDYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWAR 1175
            + D YF+ IH+I+NI+R++ Y ERTL K+ + +TSELV+RVLR+C+ S   S RFFNWAR
Sbjct: 6    NRDAYFSLIHNITNIIRKEVYPERTLNKLNLPITSELVFRVLRACSNSPSESLRFFNWAR 65

Query: 1174 NQPRYEPTTLEFEELIKILGKNKNWETMWKVAEQMK-KMG--FVLTPDTFSMIIESYGKN 1004
            +   Y PTT+E+EELI  L +NK + +MWK+  Q+K  +G  F ++ DT   IIE YGK+
Sbjct: 66   SY--YSPTTIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVCSIIEEYGKH 123

Query: 1003 GLVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRT 827
            GL+D+AVEVFN+  ++ NC+  + VYNSLLFALCEVK F GAYAL+RR+IRKG VPDKRT
Sbjct: 124  GLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRMIRKGIVPDKRT 183

Query: 826  YSILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMT 647
            Y +LVNGWCS+GKL+EA+ FLEEMS+KGFNPPVRGRDLLI+GLL+AGYLE+AK +VR+M 
Sbjct: 184  YGVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMM 243

Query: 646  KEGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMD 467
            KEG +PD+ TFNS++EAIC  GEV+FCV ++  VCKLG  PDI++YK++IPAVSK+GR+D
Sbjct: 244  KEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHSVCKLGFCPDINSYKILIPAVSKVGRID 303

Query: 466  EAFRFLYCSIEDGHKPFPSLYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLI 287
            EAFR L+  IEDGHKPFPSLYAPI+KG+ R GQFDDAF FFS MK +GHPPNRPVY M+I
Sbjct: 304  EAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKVKGHPPNRPVYTMMI 363

Query: 286  KMCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISLRG 110
             MC RGG+ VEAANYL+EM E+ L P  + FD++TDGLK+ GKHDLAKRIEQ+E+SLRG
Sbjct: 364  TMCGRGGKHVEAANYLVEMTEIGLVPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSLRG 422


>ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297317651|gb|EFH48073.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 459

 Score =  565 bits (1455), Expect = e-158
 Identities = 268/413 (64%), Positives = 337/413 (81%), Gaps = 1/413 (0%)
 Frame = -3

Query: 1345 DYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWARNQP 1166
            DYFAAI+H+ NIVRR+ + ER+L  +++ +TSE V+RVLR+ ++S  +S RFFNWAR+ P
Sbjct: 46   DYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFRVLRATSRSANDSLRFFNWARSNP 105

Query: 1165 RYEPTTLEFEELIKILGKNKNWETMWKVAEQMKKMGFVLTPDTFSMIIESYGKNGLVDKA 986
             Y PT++E+EEL K L  +K +E+MWK+ +QMK +   ++ +T   IIE YGKNG VD+A
Sbjct: 106  SYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQA 165

Query: 985  VEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTYSILVN 809
            VE+FN + K   C+QT+ VYN+LL ALC+VK F GAYALIRR+IRKG  PDKRTY+ILVN
Sbjct: 166  VELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVN 225

Query: 808  GWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLP 629
            GWCSAGK+KEAQ+FL+EMSRKGFNPP RGRDLLI+GLL+AGYLE+AK +V KMTK GF+P
Sbjct: 226  GWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVP 285

Query: 628  DITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMDEAFRFL 449
            DI TFN+L+EAI + GEVEFC+ ++   CKLGL  DI TYK +IPAVSK+G++DEAFR L
Sbjct: 286  DILTFNTLIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLL 345

Query: 448  YCSIEDGHKPFPSLYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLIKMCARG 269
               +EDGHKPFPSLYAPI+KG+CR G FDDAF+FFS+MK + HPPNRPVY MLI MC RG
Sbjct: 346  NNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRG 405

Query: 268  GRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISLRG 110
            G+FV+AANYL+EM EM L P  + FD++TDGLK+ GKHDLA RIEQ+E+ LRG
Sbjct: 406  GKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNSGKHDLAMRIEQLEVQLRG 458