BLASTX nr result
ID: Coptis25_contig00022942
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00022942
(756 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002308870.1| predicted protein [Populus trichocarpa] gi|2... 80 5e-16
emb|CAN61215.1| hypothetical protein VITISV_037032 [Vitis vinifera] 83 6e-16
ref|XP_002277745.2| PREDICTED: cell division cycle protein 48 ho... 83 8e-16
emb|CBI32813.3| unnamed protein product [Vitis vinifera] 83 8e-16
ref|XP_003624920.1| AAA family ATPase CDC48 subfamily [Medicago ... 79 2e-14
>ref|XP_002308870.1| predicted protein [Populus trichocarpa] gi|222854846|gb|EEE92393.1|
predicted protein [Populus trichocarpa]
Length = 1042
Score = 79.7 bits (195), Expect(2) = 5e-16
Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 29/156 (18%)
Frame = +2
Query: 374 VLKNGLRLSWSLACTLGNPSAGKIAFVSPIQTHSI---------------------NCSN 490
V KNG RLS +LA +G P++GK+ FV I+ + NC+
Sbjct: 158 VSKNGARLSSNLAYMMGCPASGKVVFVHTIRNKLLTDIVNGNDTPEGANADDLSLHNCNE 217
Query: 491 LYLQVVPSKNAVVINGN------LTSKYQHDQLENGKIASPKTPSLHRSKLN--SPVVCS 646
LYL++VP + V + + L+++ +HD+ ENG I+SPKTP L + KL+ SP+ +
Sbjct: 218 LYLELVPFMDRVKMKSDTMSAMKLSAEKRHDRSENGMISSPKTP-LCQPKLSSPSPIHLT 276
Query: 647 TPNSQDSGSKMHSSNETIVSTYGIEEALENEKSREL 754
+P +++ S + +SN T V I+E LE+E +++L
Sbjct: 277 SPICEEAASNISNSNGTDVGLLNIKEVLEDESAKKL 312
Score = 30.8 bits (68), Expect(2) = 5e-16
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 235 EYDGLDKRRSNDPGCYFALARVFPSC 312
E + +DK +N+ G YFALA VFPSC
Sbjct: 132 EVESVDKI-TNEAGNYFALATVFPSC 156
>emb|CAN61215.1| hypothetical protein VITISV_037032 [Vitis vinifera]
Length = 575
Score = 83.2 bits (204), Expect(2) = 6e-16
Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 29/156 (18%)
Frame = +2
Query: 374 VLKNGLRLSWSLACTLGNPSAGKIAFVSPIQTHSI---------------------NCSN 490
VLKNG+RLS +L T+G+P++ +I FV IQ+ S+ C
Sbjct: 176 VLKNGVRLSLNLYHTMGSPASARIVFVYLIQSQSVTGFVNGSRKSHSTTINGLSLYKCKE 235
Query: 491 LYLQVVPSKNAVVINGNLTSKYQHD------QLENGKIASPKTPSLHRSKLNSP--VVCS 646
LYL+++PSKN +N ++ S Q Q+ NG +SPKTP ++SKL SP +
Sbjct: 236 LYLEMIPSKNGSTVNSDMQSTVQXSTETTNYQVSNGAASSPKTPVSYQSKLISPNSNQLT 295
Query: 647 TPNSQDSGSKMHSSNETIVSTYGIEEALENEKSREL 754
+P DS S + + N I +++ I E L +E +++L
Sbjct: 296 SPICDDSVSSLSNPNNKIFASFDITEVLGDETAKKL 331
Score = 26.9 bits (58), Expect(2) = 6e-16
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 268 DPGCYFALARVFPSC 312
+ G YFALA VFPSC
Sbjct: 136 EAGNYFALATVFPSC 150
>ref|XP_002277745.2| PREDICTED: cell division cycle protein 48 homolog AF_1297-like
[Vitis vinifera]
Length = 1030
Score = 82.8 bits (203), Expect(2) = 8e-16
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 29/156 (18%)
Frame = +2
Query: 374 VLKNGLRLSWSLACTLGNPSAGKIAFVSPIQTHSI---------------------NCSN 490
VLKNG+RLS +L T+G+P++ +I FV IQ+ S+ C
Sbjct: 152 VLKNGVRLSLNLYHTMGSPASARIVFVYLIQSQSVTGFVNGSRKSHSTTINGLSLYKCKE 211
Query: 491 LYLQVVPSKNAVVINGNLTSKYQ------HDQLENGKIASPKTPSLHRSKLNSP--VVCS 646
LYL+++PSKN +N ++ S Q + Q+ NG +SPKTP ++SKL SP +
Sbjct: 212 LYLEMIPSKNGSTVNSDMQSTVQVSTETTNYQVSNGAASSPKTPVSYQSKLISPNSNQLT 271
Query: 647 TPNSQDSGSKMHSSNETIVSTYGIEEALENEKSREL 754
+P DS S + + N I +++ I E L +E +++L
Sbjct: 272 SPICDDSVSSLSNPNNKIFASFDITEVLGDETAKKL 307
Score = 26.9 bits (58), Expect(2) = 8e-16
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 268 DPGCYFALARVFPSC 312
+ G YFALA VFPSC
Sbjct: 136 EAGNYFALATVFPSC 150
>emb|CBI32813.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 82.8 bits (203), Expect(2) = 8e-16
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 29/156 (18%)
Frame = +2
Query: 374 VLKNGLRLSWSLACTLGNPSAGKIAFVSPIQTHSI---------------------NCSN 490
VLKNG+RLS +L T+G+P++ +I FV IQ+ S+ C
Sbjct: 152 VLKNGVRLSLNLYHTMGSPASARIVFVYLIQSQSVTGFVNGSRKSHSTTINGLSLYKCKE 211
Query: 491 LYLQVVPSKNAVVINGNLTSKYQ------HDQLENGKIASPKTPSLHRSKLNSP--VVCS 646
LYL+++PSKN +N ++ S Q + Q+ NG +SPKTP ++SKL SP +
Sbjct: 212 LYLEMIPSKNGSTVNSDMQSTVQVSTETTNYQVSNGAASSPKTPVSYQSKLISPNSNQLT 271
Query: 647 TPNSQDSGSKMHSSNETIVSTYGIEEALENEKSREL 754
+P DS S + + N I +++ I E L +E +++L
Sbjct: 272 SPICDDSVSSLSNPNNKIFASFDITEVLGDETAKKL 307
Score = 26.9 bits (58), Expect(2) = 8e-16
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 268 DPGCYFALARVFPSC 312
+ G YFALA VFPSC
Sbjct: 136 EAGNYFALATVFPSC 150
>ref|XP_003624920.1| AAA family ATPase CDC48 subfamily [Medicago truncatula]
gi|355499935|gb|AES81138.1| AAA family ATPase CDC48
subfamily [Medicago truncatula]
Length = 1046
Score = 79.3 bits (194), Expect(2) = 2e-14
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 8/135 (5%)
Frame = +2
Query: 374 VLKNGLRLSWSLACTLGNPSAGKIAFVSPIQTHSI--NCSNLYLQVVPSKNAVVINGN-- 541
VLK+G+RLS +L +G P G FV P+ S+ NC +YLQ+ K+ + N
Sbjct: 151 VLKDGVRLSLNLFFAMGRPPLGTCVFVHPVHKQSLIYNCKEIYLQLATCKSGTPLKVNNS 210
Query: 542 ----LTSKYQHDQLENGKIASPKTPSLHRSKLNSPVVCSTPNSQDSGSKMHSSNETIVST 709
L+ Q EN +ASPKTPS + S+ ++ V S+P +DS S + +N V++
Sbjct: 211 PSLDLSKSKSRVQTENDIVASPKTPS-YGSRFSNDSVYSSPVYEDSASSVTDNNGQSVTS 269
Query: 710 YGIEEALENEKSREL 754
+ + +AL NE S++L
Sbjct: 270 FDVSKALGNESSKKL 284
Score = 25.8 bits (55), Expect(2) = 2e-14
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Frame = +1
Query: 10 YPSLISKQNTLISKITDIQQPTLTSRNTPATVWLXXXXXXXXXXXLRPNXXXXXXXXXXX 189
+PS IS + L+++ITD++ S+ A +WL L P
Sbjct: 52 FPSFIS-HSALVAEITDVESADSLSKGA-AKIWLSESSMVASS--LAPGSLVSVSIPSSS 107
Query: 190 XXXFGASAVDLLVNDEYDGLDKRRSNDP---GCYFALARVFPS 309
A + + + +GL+ ++ D G YFA+A VFPS
Sbjct: 108 KGI--AESHNFPLTSLTNGLETSKTLDDDVAGNYFAIATVFPS 148