BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022785
         (1050 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, ch...   326   7e-87
ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Popu...   319   8e-85
gb|ACD56611.1| putative photosystem II protein [Gossypioides kir...   318   1e-84
ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast p...   316   7e-84
gb|AFK43146.1| unknown [Lotus japonicus]                              313   5e-83

>ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic [Vitis
           vinifera] gi|302141814|emb|CBI19017.3| unnamed protein
           product [Vitis vinifera]
          Length = 270

 Score =  326 bits (835), Expect = 7e-87
 Identities = 180/274 (65%), Positives = 201/274 (73%), Gaps = 3/274 (1%)
 Frame = -1

Query: 897 MAQTMMLMSSVAGHG-LDLKRAPLIHRLKPKPFSHFFLTPXXXXXXXXXXXXXXTIALFX 721
           MAQTM++  SV+GH  LDLKR PL+ RL+PKPFSH  L P               +ALF 
Sbjct: 1   MAQTMLITPSVSGHSVLDLKRQPLLQRLRPKPFSHLLLPPLPTSSSTSSPAFTT-LALFK 59

Query: 720 XXXXXXXXXXXXXXXSEPKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGI 541
                           +PKP+VED           TK+NELFVGRVAM+GFAASLLGE I
Sbjct: 60  SKTKAAPSKKVT----KPKPQVEDGIFGTSGGIGFTKKNELFVGRVAMLGFAASLLGEAI 115

Query: 540 TGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDD--ATGLEKAVIP 367
           TGKGILAQLN+ETGIPIYEAEP          LGAIGALGDRGRFVDD   TG+E AVIP
Sbjct: 116 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDDPPTGIEGAVIP 175

Query: 366 TGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 187
            GK  RSALGLREGGP+FGFTK+NELFVGRLAQLG  FS+IGEIITGKGALAQLNIETGV
Sbjct: 176 PGKGLRSALGLREGGPLFGFTKSNELFVGRLAQLGIVFSIIGEIITGKGALAQLNIETGV 235

Query: 186 PINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 85
           PI+++EPLVLFNV+FFF AALNPG+GKFVTD+EE
Sbjct: 236 PISDIEPLVLFNVIFFFFAALNPGSGKFVTDDEE 269


>ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]
           gi|118488707|gb|ABK96164.1| unknown [Populus
           trichocarpa] gi|222842713|gb|EEE80260.1| hypothetical
           protein POPTRDRAFT_816277 [Populus trichocarpa]
          Length = 272

 Score =  319 bits (817), Expect = 8e-85
 Identities = 183/277 (66%), Positives = 200/277 (72%), Gaps = 6/277 (2%)
 Frame = -1

Query: 897 MAQTMMLMSSVAGHG-LDLKRAPL----IHRLKPKPFSHFFLTPXXXXXXXXXXXXXXTI 733
           MAQTM+LMS V+    +DLKR PL    + RL+P PFS     P              T+
Sbjct: 1   MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNP--LPSKASSSNAFTTL 58

Query: 732 ALFXXXXXXXXXXXXXXXXSEPKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLL 553
           ALF                  PKPKVED           TKQNELFVGRVAMIGFAASLL
Sbjct: 59  ALF----KPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLL 114

Query: 552 GEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDD-ATGLEKA 376
           GE ITGKGIL+QLN+ETGIPIYEAEP          LGAIGALGDRGRFVDD  TG+E A
Sbjct: 115 GEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPTTGIEGA 174

Query: 375 VIPTGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 196
           VIP GKSFR+ALGL+EGGP+FGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNIE
Sbjct: 175 VIPPGKSFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 234

Query: 195 TGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 85
           TG+P+NE+EPLVLFNVLFFFIAALNPG GKFVTDE+E
Sbjct: 235 TGIPVNEIEPLVLFNVLFFFIAALNPGTGKFVTDEDE 271


>gb|ACD56611.1| putative photosystem II protein [Gossypioides kirkii]
          Length = 277

 Score =  318 bits (815), Expect = 1e-84
 Identities = 183/280 (65%), Positives = 199/280 (71%), Gaps = 9/280 (3%)
 Frame = -1

Query: 897 MAQTMMLMSSV---AGHGLDLKRA-PLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXX 742
           MAQTM++MSS    A H ++LKR  PL+H     LKPKPFSHF   P             
Sbjct: 1   MAQTMLVMSSTSVSASHVVNLKRDHPLLHFQAQGLKPKPFSHFLFNPLSNAVAASSSKAF 60

Query: 741 XTIALFXXXXXXXXXXXXXXXXSEPKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAA 562
            T ALF                 +PKPKVED           TKQNELFVGRVAMIGFAA
Sbjct: 61  TTFALFKSKTKAAPKKAEP----KPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAA 116

Query: 561 SLLGEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDDA-TGL 385
           SLLGE ITGKGILAQLN+ETGIPIYEAEP          LGAIGALGDRGRFVD+  TG+
Sbjct: 117 SLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPPTGV 176

Query: 384 EKAVIPTGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQL 205
           E AVIP GK  R ALGL+EGGP+FGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQL
Sbjct: 177 EGAVIPPGKGVRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQL 236

Query: 204 NIETGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 85
           NIETG+PI+++EPLVLFNV FFF AA+NPG GKFVTDEEE
Sbjct: 237 NIETGIPISDIEPLVLFNVAFFFAAAINPGTGKFVTDEEE 276


>ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative
           [Ricinus communis] gi|223546847|gb|EEF48344.1|
           Photosystem II 22 kDa protein, chloroplast precursor,
           putative [Ricinus communis]
          Length = 275

 Score =  316 bits (809), Expect = 7e-84
 Identities = 179/278 (64%), Positives = 200/278 (71%), Gaps = 7/278 (2%)
 Frame = -1

Query: 897 MAQTMMLMSSVAG-HGLDLKRAPLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXXXT- 736
           MAQTM+ MS V+  H +DLKR PL+     RL+PKPFS    +P              T 
Sbjct: 1   MAQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPKPFSSLLFSPLPTNSSSFAPSKTFTT 60

Query: 735 IALFXXXXXXXXXXXXXXXXSEPKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASL 556
            ALF                 +PK KVED           TKQNELFVGRVAM+GFAASL
Sbjct: 61  FALFKSKAKAAPKKTVV----KPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASL 116

Query: 555 LGEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDDA-TGLEK 379
           LGEG+TGKGILAQLN+ETGIPIYEAEP          LGAIGALGDRG+FVDD  TG+E 
Sbjct: 117 LGEGLTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPTGIEG 176

Query: 378 AVIPTGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 199
           AVIP GK FR+ALGL+EGGP+FGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNI
Sbjct: 177 AVIPPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 236

Query: 198 ETGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 85
           ETG+P+NE+EPLVLFNV+FFF AALNPG GKFVTDEE+
Sbjct: 237 ETGIPVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEED 274


>gb|AFK43146.1| unknown [Lotus japonicus]
          Length = 273

 Score =  313 bits (802), Expect = 5e-83
 Identities = 180/278 (64%), Positives = 199/278 (71%), Gaps = 7/278 (2%)
 Frame = -1

Query: 897 MAQTMMLMSSVAG-HGLDLKRAPLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXXXTI 733
           MAQTM+LMSSV+  + +DLK+ PL+H    RL+PK FS     P              T+
Sbjct: 1   MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPK-FSQLSFNPLPSNSSLFSSRTFTTL 59

Query: 732 ALFXXXXXXXXXXXXXXXXSEPKPKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLL 553
           ALF                 + KPKVED           TKQNELFVGRVAMIGFAASLL
Sbjct: 60  ALFKSKAKAPPPKVV-----KQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLL 114

Query: 552 GEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDDA--TGLEK 379
           GE +TGKGILAQLN+ETGIPIYEAEP          LGAIGALGDRG+FVDD   TGL+K
Sbjct: 115 GEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDESPTGLDK 174

Query: 378 AVIPTGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 199
           AVIP GK  R ALGL EGGP+FGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNI
Sbjct: 175 AVIPPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 234

Query: 198 ETGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 85
           ETG+PINE+EPLVLFNV FFFIAALNPG GKFV+D+ E
Sbjct: 235 ETGIPINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGE 272