BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022744
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327962.1| predicted protein [Populus trichocarpa] gi|2...    68   9e-10
ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    65   6e-09
ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containi...    65   8e-09
ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containi...    65   8e-09
ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    62   4e-08

>ref|XP_002327962.1| predicted protein [Populus trichocarpa] gi|222837371|gb|EEE75750.1|
           predicted protein [Populus trichocarpa]
          Length = 487

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/83 (42%), Positives = 46/83 (55%)
 Frame = +3

Query: 3   ISKRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPNXXXXXXXXXXXX 182
           +SKR++   I+ DVF  N LINC+S   RVDF F+VLG I+K GFEP+            
Sbjct: 106 LSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLC 165

Query: 183 XXXXXADAMDLFTRMLENGYPCN 251
                A AM+ F  M+ +GY  N
Sbjct: 166 FEDKFARAMEFFDEMVASGYQPN 188


>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/81 (40%), Positives = 41/81 (50%)
 Frame = +3

Query: 9   KRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPNXXXXXXXXXXXXXX 188
           KRM    + PD  TLN LINCY N  +VDFG AVLG +L+RG  PN              
Sbjct: 116 KRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLG 175

Query: 189 XXXADAMDLFTRMLENGYPCN 251
              ++A  L  +M+  GY  N
Sbjct: 176 SRISEATGLLRKMVRMGYRPN 196


>ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/84 (35%), Positives = 46/84 (54%)
 Frame = +3

Query: 3   ISKRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPNXXXXXXXXXXXX 182
           +S R++   IQPD+FTLN LINC+ + G++ FGF+VL  ILKRG+ P+            
Sbjct: 329 LSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLC 388

Query: 183 XXXXXADAMDLFTRMLENGYPCNE 254
                  A+    ++L  G+  N+
Sbjct: 389 LKGQVKKALHFHDKLLAQGFQLNQ 412


>ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/84 (35%), Positives = 46/84 (54%)
 Frame = +3

Query: 3   ISKRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPNXXXXXXXXXXXX 182
           +S R++   IQPD+FTLN LINC+ + G++ FGF+VL  ILKRG+ P+            
Sbjct: 80  LSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLC 139

Query: 183 XXXXXADAMDLFTRMLENGYPCNE 254
                  A+    ++L  G+  N+
Sbjct: 140 LKGQVKKALHFHDKLLAQGFQLNQ 163


>ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 25/48 (52%), Positives = 38/48 (79%)
 Frame = +3

Query: 3   ISKRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPN 146
           +S R++   IQPD FTLN L+NC+ + G+++FGF+VL  ILKRG++P+
Sbjct: 92  LSHRLELKGIQPDFFTLNILMNCFCHMGQINFGFSVLAKILKRGYQPH 139