BLASTX nr result
ID: Coptis25_contig00022744
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00022744 (254 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002327962.1| predicted protein [Populus trichocarpa] gi|2... 68 9e-10 ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi... 65 6e-09 ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containi... 65 8e-09 ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containi... 65 8e-09 ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 62 4e-08 >ref|XP_002327962.1| predicted protein [Populus trichocarpa] gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa] Length = 487 Score = 67.8 bits (164), Expect = 9e-10 Identities = 35/83 (42%), Positives = 46/83 (55%) Frame = +3 Query: 3 ISKRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPNXXXXXXXXXXXX 182 +SKR++ I+ DVF N LINC+S RVDF F+VLG I+K GFEP+ Sbjct: 106 LSKRIELLRIERDVFHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLC 165 Query: 183 XXXXXADAMDLFTRMLENGYPCN 251 A AM+ F M+ +GY N Sbjct: 166 FEDKFARAMEFFDEMVASGYQPN 188 >ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] Length = 627 Score = 65.1 bits (157), Expect = 6e-09 Identities = 33/81 (40%), Positives = 41/81 (50%) Frame = +3 Query: 9 KRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPNXXXXXXXXXXXXXX 188 KRM + PD TLN LINCY N +VDFG AVLG +L+RG PN Sbjct: 116 KRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLG 175 Query: 189 XXXADAMDLFTRMLENGYPCN 251 ++A L +M+ GY N Sbjct: 176 SRISEATGLLRKMVRMGYRPN 196 >ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like [Glycine max] Length = 794 Score = 64.7 bits (156), Expect = 8e-09 Identities = 30/84 (35%), Positives = 46/84 (54%) Frame = +3 Query: 3 ISKRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPNXXXXXXXXXXXX 182 +S R++ IQPD+FTLN LINC+ + G++ FGF+VL ILKRG+ P+ Sbjct: 329 LSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLC 388 Query: 183 XXXXXADAMDLFTRMLENGYPCNE 254 A+ ++L G+ N+ Sbjct: 389 LKGQVKKALHFHDKLLAQGFQLNQ 412 >ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Glycine max] Length = 447 Score = 64.7 bits (156), Expect = 8e-09 Identities = 30/84 (35%), Positives = 46/84 (54%) Frame = +3 Query: 3 ISKRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPNXXXXXXXXXXXX 182 +S R++ IQPD+FTLN LINC+ + G++ FGF+VL ILKRG+ P+ Sbjct: 80 LSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLC 139 Query: 183 XXXXXADAMDLFTRMLENGYPCNE 254 A+ ++L G+ N+ Sbjct: 140 LKGQVKKALHFHDKLLAQGFQLNQ 163 >ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like [Glycine max] Length = 450 Score = 62.4 bits (150), Expect = 4e-08 Identities = 25/48 (52%), Positives = 38/48 (79%) Frame = +3 Query: 3 ISKRMDAAAIQPDVFTLNTLINCYSNTGRVDFGFAVLGSILKRGFEPN 146 +S R++ IQPD FTLN L+NC+ + G+++FGF+VL ILKRG++P+ Sbjct: 92 LSHRLELKGIQPDFFTLNILMNCFCHMGQINFGFSVLAKILKRGYQPH 139