BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022729
         (1218 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22720.3| unnamed protein product [Vitis vinifera]              394   e-107
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s...   382   e-104
ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III s...   312   1e-82
ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|2...   311   2e-82
ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III s...   309   1e-81

>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
          Length = 524

 Score =  394 bits (1013), Expect = e-107
 Identities = 219/376 (58%), Positives = 268/376 (71%), Gaps = 7/376 (1%)
 Frame = +3

Query: 12   KLVSEHFVERCPPSEPSVRL-QDGDNSTRKRGTKSASFVRT-KTLEQKVITAAVSL--KR 179
            KLV  HFVERCP SEP +    + +   RKRG KSA  V   +T+EQ+ I AA  +  KR
Sbjct: 156  KLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKR 215

Query: 180  FDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMDD--GTIDEKDILWRANFEEFIC 353
            F   +NTG DV    N       VT GEKRK +ALE+D   G   EKD+LWRANFEEF+ 
Sbjct: 216  FSVIINTGTDVDDSPN-------VTAGEKRKQDALELDKETGASCEKDVLWRANFEEFVR 268

Query: 354  HLKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSEEG 533
             L+ KACIA+V++RLDD   + L+A+L+ATR  EKKVK ENSVPLS+D IFE V+KSE G
Sbjct: 269  CLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAG 328

Query: 534  RCMTKERVDLALSQMGCHPTTIGTKASYSVDVKNIIEIARKEEVESLISKRYGKDACRMF 713
            R MT ERV  +L Q+GC P   G   SYSVD+KNIIE+A+ +EVES+  KRYG+DA R+F
Sbjct: 329  RSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIF 388

Query: 714  KLLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEKPVSQGA-QSQFLLWKVN 890
            +LL K+  L+ETDKISDT FV K +  K L  L  D YLQMEK    G+ QSQFLLWKV 
Sbjct: 389  RLLSKSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVT 448

Query: 891  KSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHKRIGAEGKRYERIRDVNILLE 1070
            K +L  HV +EM H+ALNL LR+AYELEQE EI+QLP+ KR+GA G R+ER+R V ILLE
Sbjct: 449  KDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLE 508

Query: 1071 SSLMKLDEALMLFHDY 1118
            SSLMKLD+A+MLF+D+
Sbjct: 509  SSLMKLDDAIMLFNDF 524


>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
            vinifera]
          Length = 511

 Score =  382 bits (982), Expect = e-104
 Identities = 214/376 (56%), Positives = 263/376 (69%), Gaps = 7/376 (1%)
 Frame = +3

Query: 12   KLVSEHFVERCPPSEPSVRL-QDGDNSTRKRGTKSASFVRT-KTLEQKVITAAVSL--KR 179
            KLV  HFVERCP SEP +    + +   RKRG KSA  V   +T+EQ+ I AA  +  KR
Sbjct: 149  KLVRAHFVERCPASEPFLAPPSEEETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKR 208

Query: 180  FDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMDD--GTIDEKDILWRANFEEFIC 353
            F   +NTG DV    N             RK +ALE+D   G   EKD+LWRANFEEF+ 
Sbjct: 209  FSVIINTGTDVDDSPN-------------RKQDALELDKETGASCEKDVLWRANFEEFVR 255

Query: 354  HLKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSEEG 533
             L+ KACIA+V++RLDD   + L+A+L+ATR  EKKVK ENSVPLS+D IFE V+KSE G
Sbjct: 256  CLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAG 315

Query: 534  RCMTKERVDLALSQMGCHPTTIGTKASYSVDVKNIIEIARKEEVESLISKRYGKDACRMF 713
            R MT ERV  +L Q+GC P   G   SYSVD+KNIIE+A+ +EVES+  KRYG+DA R+F
Sbjct: 316  RSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIF 375

Query: 714  KLLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEKPVSQGA-QSQFLLWKVN 890
            +LL K+  L+ETDKISDT FV K +  K L  L  D YLQMEK    G+ QSQFLLWKV 
Sbjct: 376  RLLSKSCRLLETDKISDTTFVEKKDTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVT 435

Query: 891  KSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHKRIGAEGKRYERIRDVNILLE 1070
            K +L  HV +EM H+ALNL LR+AYELEQE EI+QLP+ KR+GA G R+ER+R V ILLE
Sbjct: 436  KDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGALGNRFERLRKVRILLE 495

Query: 1071 SSLMKLDEALMLFHDY 1118
            SSLMKLD+A+MLF+D+
Sbjct: 496  SSLMKLDDAIMLFNDF 511


>ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 518

 Score =  312 bits (800), Expect = 1e-82
 Identities = 180/378 (47%), Positives = 245/378 (64%), Gaps = 7/378 (1%)
 Frame = +3

Query: 6    ISKLVSEHFVERCPPSEPSVRLQDGDNSTRKRGTKSAS-FVRTKTLEQKVITAAV--SLK 176
            + KL++  FVERCP  EP V     + +T+KRG KSA  F   +TLEQ+V+ AAV   + 
Sbjct: 154  LCKLLTARFVERCPAPEPVVSTSFKETTTKKRGAKSAKIFEAPETLEQRVVDAAVPGDVI 213

Query: 177  RFDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMDDGTIDEKDILWRANFEEFICH 356
            RF  T N G++V  E N+              V  + +++    E+ ILWRANFEEFI H
Sbjct: 214  RFSLTANMGSNVDRETNS------------DDVPMISVEEDVAKEEQILWRANFEEFIRH 261

Query: 357  LKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSEEGR 536
            L+ K  I +VR++ DD     L+AVL+AT   EKKVK++NSVPLSLD I  EV+K++ GR
Sbjct: 262  LRHKVLIENVRTQHDDGTATVLSAVLEATGSVEKKVKMDNSVPLSLDTIITEVMKTDTGR 321

Query: 537  CMTKERVDLALSQMGCHPTTIGTKASYSVDVKNIIEIARKEEVESLISKRYGKDACRMFK 716
             MT +R+  +L Q+GC P+ I  + SY +D+K IIE AR EEVES++ KRYG+DA RMF+
Sbjct: 322  TMTIDRIRASLVQLGCSPSMI-LEESYCIDLKKIIEPARNEEVESIVLKRYGRDAYRMFR 380

Query: 717  LLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEK--PVSQGAQSQFLLWKVN 890
            LL K+    +TD+I+ +  V K EA K L  L  D YL MEK    +   Q   L+WKVN
Sbjct: 381  LLAKDCCFHDTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATAGAKQITILMWKVN 440

Query: 891  KSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHK--RIGAEGKRYERIRDVNIL 1064
            K  L E+V DEM HAALNL LR+A+E E++ E+L++PK K    G   K+Y+R+ +V +L
Sbjct: 441  KPLLWEYVLDEMYHAALNLSLRMAFEQEKDEELLKVPKDKLREPGPLQKKYKRLLNVRLL 500

Query: 1065 LESSLMKLDEALMLFHDY 1118
            + SSL+KLD+ALMLFHD+
Sbjct: 501  MGSSLLKLDDALMLFHDF 518


>ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|222868916|gb|EEF06047.1|
            predicted protein [Populus trichocarpa]
          Length = 519

 Score =  311 bits (798), Expect = 2e-82
 Identities = 179/378 (47%), Positives = 250/378 (66%), Gaps = 9/378 (2%)
 Frame = +3

Query: 12   KLVSEHFVERCPPSEPSVRLQDGDNST--RKRGTKSA-SFVRTKTLEQKVITAAVSLKRF 182
            KLV   +VERCP SEP + L   + +   R+RG KSA +F+  +TLEQ+V+ AAV  +  
Sbjct: 152  KLVMARYVERCPISEPFLALPSEEEAAPVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGM 211

Query: 183  DFTMNTGADVISEANALRKPANVTVGEKRKVEALEMD-DGTIDEKDI-LWRANFEEFICH 356
             F+     ++ ++ + +   ++  +G+KRK++ALE D DG + +K + LWR NFEEFI  
Sbjct: 212  RFSFELNPEIGADRDKVENNSSSNIGDKRKLDALESDIDGGVADKQVALWRVNFEEFIRR 271

Query: 357  LKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSEEGR 536
            L+ K CI +VR+RLDDE      A+LDA+R  EKK+K  +SVPLS ++I+ EVIKSE+GR
Sbjct: 272  LRHKICIETVRTRLDDEAATVFTAMLDASRSEEKKIKTASSVPLSENSIYAEVIKSEKGR 331

Query: 537  CMTKERVDLALSQMGCHPTTIG-TKASYSVDVKNIIEIARKEEVESLISKRYGKDACRMF 713
             MT + V   L  +   P  +     SYS+D K+ IE+A+ +  ES++ K+YGKDA RMF
Sbjct: 332  NMTLDYVISVLVGLSSSPPFVRVVDNSYSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMF 389

Query: 714  KLLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEKPVSQGAQSQFLLWKVNK 893
            +LL K G L+ETDKISD+ F+ K E    LS +    YLQMEK ++    +QFLLWKVN 
Sbjct: 390  RLLSKAGRLLETDKISDSIFLEKKETANILSKMWQGDYLQMEKLIA--GPTQFLLWKVNM 447

Query: 894  SSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHKRIGAEG---KRYERIRDVNIL 1064
             +L E V D+M HAALNL LR+AYELEQ+ EIL L      G +G   ++YE+++ V  L
Sbjct: 448  INLRERVLDDMFHAALNLSLRVAYELEQQKEILHL------GVDGPMKEKYEKLKKVRFL 501

Query: 1065 LESSLMKLDEALMLFHDY 1118
            LESS MKLD+A+M+FHD+
Sbjct: 502  LESSRMKLDDAIMIFHDF 519


>ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
            max]
          Length = 510

 Score =  309 bits (791), Expect = 1e-81
 Identities = 182/378 (48%), Positives = 244/378 (64%), Gaps = 7/378 (1%)
 Frame = +3

Query: 6    ISKLVSEHFVERCPPSEPSVRLQDGDNSTRKRGTKSAS-FVRTKTLEQKVITAAV--SLK 176
            + KL++  FVERCP  EP V     + +TRKRG KSA  F   +TLEQ+V+ AAV   + 
Sbjct: 146  LCKLLTARFVERCPAPEPVVSTSFKETTTRKRGAKSAKIFEAPETLEQRVVDAAVPGDVI 205

Query: 177  RFDFTMNTGADVISEANALRKPANVTVGEKRKVEALEMDDGTIDEKDILWRANFEEFICH 356
            RF    +T   V  E N+               + + +++    E  ILWRANFEEFI H
Sbjct: 206  RFSLAADTRCSVDRETNS------------DDAQMISVEEEVAKEGQILWRANFEEFIRH 253

Query: 357  LKQKACIASVRSRLDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSEEGR 536
            L+ K  I +VR++ DD     L+AVL+ATR  +KKVK ENSVPLSLD I  EV+K++ GR
Sbjct: 254  LRHKVLIENVRTQHDDGTATVLSAVLEATRSVQKKVKTENSVPLSLDTIITEVMKTDTGR 313

Query: 537  CMTKERVDLALSQMGCHPTTIGTKASYSVDVKNIIEIARKEEVESLISKRYGKDACRMFK 716
             MT +R+  +L Q+GC P+ I  + SYS+D+K IIE AR EEVES++ KRYG D  R+F+
Sbjct: 314  TMTVDRIRASLVQLGCSPSMI-LEESYSIDLKKIIEPARNEEVESIVLKRYGTDGYRIFR 372

Query: 717  LLWKNGELMETDKISDTAFVNKNEALKSLSNLGNDGYLQMEK-PVSQGA-QSQFLLWKVN 890
            LL K+    +TD+I+ +  V K EA K L  L  D YL MEK   + GA Q+  L+WKVN
Sbjct: 373  LLAKDCCFHDTDQIAASTLVEKKEASKLLYKLWKDNYLYMEKVGATVGAKQTTILMWKVN 432

Query: 891  KSSLGEHVFDEMCHAALNLRLRLAYELEQEHEILQLPKHKRIGAE--GKRYERIRDVNIL 1064
            K  L E+V DEM HAALNL LR+A+E E++ E+L++PK KR G     K+Y+++ +V +L
Sbjct: 433  KPLLWEYVLDEMYHAALNLSLRMAFEQEKDEELLKVPKDKRQGPGPLQKKYKKLLNVWLL 492

Query: 1065 LESSLMKLDEALMLFHDY 1118
            L SSLMKLD+ALMLFHD+
Sbjct: 493  LGSSLMKLDDALMLFHDF 510