BLASTX nr result
ID: Coptis25_contig00022572
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00022572 (2416 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 66 2e-21 gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 71 1e-09 gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 68 1e-08 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 65.9 bits (159), Expect(2) = 2e-21 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 18/166 (10%) Frame = +1 Query: 619 IPSYKEIETTVFAMD-QGNSGPDGFQGMFYQAYWNIVKSDVRKAIKSFF----------- 762 +P + E++ VF ++ G GP+GF G FYQ YW+IV +DV ++++ FF Sbjct: 441 LPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADVIQSVQDFFISGQLAQNINS 500 Query: 763 --IVVIPIGMDSHFITHIR---MGNFIMN-*R*F*KNYK*DVTMLLRS*CQRNRQVSSKG 924 IV+IP + + R + NF + D+TM + S QR Sbjct: 501 NLIVLIPKVPGARVMGDYRPIALANFQFKIISKILADRLADITMRIISVEQRG--FIRDR 558 Query: 925 DASKAFQANIGLHSGMANELKKKIFAGNVGLRIDISQAYDTLSW*F 1062 D SK + L S N L+K+ + GNV L++DI++A+DTL W F Sbjct: 559 DISKC----VILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNF 600 Score = 65.5 bits (158), Expect(2) = 2e-21 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 2/136 (1%) Frame = +2 Query: 1076 TISHGE*RS--MRSLLFAPAEDVLSRGLNFLREQGLXXXXXXXXXXXXXGPSHLLFADDI 1249 T SHG + + LLF E+VLSR L+ G P+H+L+ADD+ Sbjct: 640 TCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSF--PTHILYADDV 697 Query: 1250 FIFAKGDLRGVRYIAGLLHRCELSSGQCVSKAKSKLFTGCVTVVRKELLQNELGITVGAF 1429 IF G R +R + + + SGQ ++ AKS+ FT +T R +++ + LG VG+ Sbjct: 698 LIFCTGTKRNIRRLIKIFSQYSEVSGQLINNAKSRFFTSAMTGSRVQMISSLLGFNVGSL 757 Query: 1430 LERDLGSWVYPLFKAR 1477 LG P+F+ + Sbjct: 758 PFTYLGC---PIFRGK 770 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 71.2 bits (173), Expect = 1e-09 Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 21/172 (12%) Frame = +1 Query: 610 IAAIPSYKEIETTVFAMDQGNS-GPDGFQGMFYQAYWNIVKSDVRKAIKSFF-------- 762 + IPS EI+ VF+++ ++ GPDGF FYQ YW+IVK DV KA+ FF Sbjct: 112 LTMIPSNDEIKQAVFSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWILPN 171 Query: 763 -----IVVIPIGMDSHFITHIR---MGNFIMN*R*F*KNYK*DVTMLLRS*CQRNRQVSS 918 +++IP ++ + R M NF +K +L Q + S Sbjct: 172 FNANTLILIPKTQNADSMDQFRPIAMANF---------KFKIISKILADRLAQIMPNIVS 222 Query: 919 KGDASKAFQANIG----LHSGMANELKKKIFAGNVGLRIDISQAYDTLSW*F 1062 + NI L S N L +K F GN+ ++DIS+A+DTL+W F Sbjct: 223 QEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKF 274 >gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 642 Score = 67.8 bits (164), Expect = 1e-08 Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 20/173 (11%) Frame = +1 Query: 604 KMIAAIPSYKEIETTVFAMDQGNS-GPDGFQGMFYQAYWNIVKSDVRKAIKSFF------ 762 +++ +P+ +E++ VF ++ ++ GPD F F+Q YWNIVK DV +A+ FF Sbjct: 171 RLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLP 230 Query: 763 -------IVVIPIGMDSHFITHIR---MGNF---IMN*R*F*KNYK*DVTMLLRS*CQRN 903 I++IP ++ + R + NF I+N K + +L S + Sbjct: 231 NNFNANSIILIPKTPNADSVDQYRTIALVNFKFKIIN-----KVLADRLAKILPSIISKE 285 Query: 904 RQVSSKGDASKAFQANIGLHSGMANELKKKIFAGNVGLRIDISQAYDTLSW*F 1062 ++ +G + + I L S N L K F GN+ L+ID+++A+DTL+W F Sbjct: 286 QRGFVQG---RNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDF 335 Score = 57.4 bits (137), Expect(2) = 4e-07 Identities = 38/122 (31%), Positives = 58/122 (47%) Frame = +2 Query: 1112 LLFAPAEDVLSRGLNFLREQGLXXXXXXXXXXXXXGPSHLLFADDIFIFAKGDLRGVRYI 1291 LLF E+VLSR ++ L ++GL P H + DD+ +F K + + + Sbjct: 389 LLFCIVEEVLSRSISILADKGLIDLIAASRNNCL--PFHCFYVDDLMVFCKAKMSSLIVL 446 Query: 1292 AGLLHRCELSSGQCVSKAKSKLFTGCVTVVRKELLQNELGITVGAFLERDLGSWVYPLFK 1471 L R SGQ ++ KS +F G +T R + N LG VG+ LG+ P+FK Sbjct: 447 KSLFTRYADCSGQIMNIRKSFIFAGGITDTRMNNIVNILGFNVGSLPFTYLGA---PIFK 503 Query: 1472 AR 1477 + Sbjct: 504 GK 505 Score = 25.4 bits (54), Expect(2) = 4e-07 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 1450 LGVPIVQGKIKNAEVRIVVDKIRKWTIGLKITLIS 1554 LG PI +GK K + + DK++ K +L+S Sbjct: 497 LGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLS 531