BLASTX nr result
ID: Coptis25_contig00022394
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00022394
(387 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera] 204 8e-51
emb|CBI35789.3| unnamed protein product [Vitis vinifera] 202 2e-50
ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containi... 202 2e-50
ref|XP_002529554.1| pentatricopeptide repeat-containing protein,... 200 1e-49
ref|XP_002322098.1| predicted protein [Populus trichocarpa] gi|2... 192 2e-47
>emb|CAN79606.1| hypothetical protein VITISV_027500 [Vitis vinifera]
Length = 959
Score = 204 bits (518), Expect = 8e-51
Identities = 97/127 (76%), Positives = 113/127 (88%)
Frame = -1
Query: 384 DANVNSAAFSNLIYALCREGLFHEVFRIAEEMPQGKSVEEGFAYGQMIDSLCRAGQNHGA 205
D +VN+AAF+NLI +LC+EG F EVFRIAE+MPQGKSV E FAYGQMIDSLCR G+NHGA
Sbjct: 563 DPSVNNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFAYGQMIDSLCRCGRNHGA 622
Query: 204 SRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEA 25
SRIVYIMRK+GF PSLVSYN I+HGL+K+ GCMRAYQL KEG+EFGY SE TYKVL+EA
Sbjct: 623 SRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEA 682
Query: 24 LCRESDI 4
LCR++D+
Sbjct: 683 LCRDADL 689
>emb|CBI35789.3| unnamed protein product [Vitis vinifera]
Length = 912
Score = 202 bits (514), Expect = 2e-50
Identities = 96/127 (75%), Positives = 112/127 (88%)
Frame = -1
Query: 384 DANVNSAAFSNLIYALCREGLFHEVFRIAEEMPQGKSVEEGFAYGQMIDSLCRAGQNHGA 205
D +VN+AAF+NLI +LC+EG F EVFRIAE+MPQGKSV E F YGQMIDSLCR G+NHGA
Sbjct: 505 DPSVNNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRCGRNHGA 564
Query: 204 SRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEA 25
SRIVYIMRK+GF PSLVSYN I+HGL+K+ GCMRAYQL KEG+EFGY SE TYKVL+EA
Sbjct: 565 SRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEA 624
Query: 24 LCRESDI 4
LCR++D+
Sbjct: 625 LCRDADL 631
Score = 58.5 bits (140), Expect = 5e-07
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Frame = -1
Query: 357 SNLIYALCREGLFHEVFRIAEEMPQGK-SVEEGFAYGQMIDSLCRAGQNHGASRIVY-IM 184
+ +I C+ G E ++ ++M GK + Y +I L G+ A ++ +M
Sbjct: 689 NTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLRRVM 748
Query: 183 RKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEALCRESDI 4
+KGF P +V++N +LHGL K + A ++F + G + + TY ++++ L I
Sbjct: 749 PEKGFKPGVVTFNAVLHGLFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQI 808
Query: 3 D 1
D
Sbjct: 809 D 809
>ref|XP_002271048.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18020-like [Vitis vinifera]
Length = 680
Score = 202 bits (514), Expect = 2e-50
Identities = 96/127 (75%), Positives = 112/127 (88%)
Frame = -1
Query: 384 DANVNSAAFSNLIYALCREGLFHEVFRIAEEMPQGKSVEEGFAYGQMIDSLCRAGQNHGA 205
D +VN+AAF+NLI +LC+EG F EVFRIAE+MPQGKSV E F YGQMIDSLCR G+NHGA
Sbjct: 273 DPSVNNAAFANLIDSLCKEGFFLEVFRIAEDMPQGKSVSEEFVYGQMIDSLCRCGRNHGA 332
Query: 204 SRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEA 25
SRIVYIMRK+GF PSLVSYN I+HGL+K+ GCMRAYQL KEG+EFGY SE TYKVL+EA
Sbjct: 333 SRIVYIMRKRGFFPSLVSYNYIVHGLSKEGGCMRAYQLLKEGVEFGYMMSEHTYKVLLEA 392
Query: 24 LCRESDI 4
LCR++D+
Sbjct: 393 LCRDADL 399
Score = 58.5 bits (140), Expect = 5e-07
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Frame = -1
Query: 357 SNLIYALCREGLFHEVFRIAEEMPQGK-SVEEGFAYGQMIDSLCRAGQNHGASRIVY-IM 184
+ +I C+ G E ++ ++M GK + Y +I L G+ A ++ +M
Sbjct: 457 NTVINGFCKMGRVEEALKVLDDMVMGKFCAPDSVTYTTIICGLLNLGRTEEALDVLRRVM 516
Query: 183 RKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEALCRESDI 4
+KGF P +V++N +LHGL K + A ++F + G + + TY ++++ L I
Sbjct: 517 PEKGFKPGVVTFNAVLHGLFKLQQANVATEVFNSMVSDGVAANTITYTIIIDGLFESDQI 576
Query: 3 D 1
D
Sbjct: 577 D 577
>ref|XP_002529554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530966|gb|EEF32823.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 678
Score = 200 bits (508), Expect = 1e-49
Identities = 94/126 (74%), Positives = 111/126 (88%)
Frame = -1
Query: 378 NVNSAAFSNLIYALCREGLFHEVFRIAEEMPQGKSVEEGFAYGQMIDSLCRAGQNHGASR 199
+VN+AAF N+I +LCREG ++VF+IAE+MPQGKSV + FAY MIDSLCRAG+NHGASR
Sbjct: 273 SVNAAAFVNVIDSLCREGFLNDVFKIAEDMPQGKSVNQEFAYAHMIDSLCRAGKNHGASR 332
Query: 198 IVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEALC 19
IVY+M+KKG PSLVSYN I+HGL K+RGCMRAYQLF+EGIEFGY PSE TYKVLVEALC
Sbjct: 333 IVYMMKKKGLTPSLVSYNSIIHGLCKERGCMRAYQLFEEGIEFGYLPSEYTYKVLVEALC 392
Query: 18 RESDID 1
+E D+D
Sbjct: 393 QEMDLD 398
Score = 58.9 bits (141), Expect = 4e-07
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Frame = -1
Query: 357 SNLIYALCREGLFHEVFRIAEEMPQGK-SVEEGFAYGQMIDSLCRAGQNHGASRIVY-IM 184
+ ++ C+ E I +M GK + + +I L AG++ A ++Y +M
Sbjct: 455 NTVVNGFCKMHRIEEALTILTDMTMGKFCAPDAVTFTTIIAGLLNAGRSQEALNLLYKVM 514
Query: 183 RKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEALCRESDI 4
+KG P + +YN ++HGL K + A + FK + G + TY ++++ LC I
Sbjct: 515 HEKGISPGVETYNAVIHGLFKLQLAEEAMRAFKRMLAAGVAADSKTYTLIIDGLCESGLI 574
Query: 3 D 1
D
Sbjct: 575 D 575
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/113 (25%), Positives = 57/113 (50%)
Frame = -1
Query: 372 NSAAFSNLIYALCREGLFHEVFRIAEEMPQGKSVEEGFAYGQMIDSLCRAGQNHGASRIV 193
+S ++ +I LC GL + ++ +++ + + F Y ++ LCRAG+ A +
Sbjct: 557 DSKTYTLIIDGLCESGLIDKAKKLWDDVIWPSRIHDDFVYASILKGLCRAGKLDEACHFL 616
Query: 192 YIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVL 34
Y + G P+++SYN ++ K AYQ+ E + G +P T+++L
Sbjct: 617 YELVDSGVSPNIISYNIVIDSACKLGMKREAYQVVTEMRKNGLTPDAVTWRIL 669
>ref|XP_002322098.1| predicted protein [Populus trichocarpa] gi|222869094|gb|EEF06225.1|
predicted protein [Populus trichocarpa]
Length = 668
Score = 192 bits (488), Expect = 2e-47
Identities = 91/128 (71%), Positives = 106/128 (82%)
Frame = -1
Query: 384 DANVNSAAFSNLIYALCREGLFHEVFRIAEEMPQGKSVEEGFAYGQMIDSLCRAGQNHGA 205
D +VNSAAF NL+ LCREGLF+EVF IAEEMPQG V E FAYG +IDSLC+ G++HGA
Sbjct: 262 DQSVNSAAFDNLVDCLCREGLFNEVFMIAEEMPQGNRVNEDFAYGHLIDSLCKVGRSHGA 321
Query: 204 SRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEA 25
SR+VYIMRKKGF PS+VSYN I+HGL K+ GCMRAYQL +EG+ FGY SE TYKVLVEA
Sbjct: 322 SRVVYIMRKKGFTPSVVSYNSIIHGLCKEGGCMRAYQLLEEGVGFGYLLSEYTYKVLVEA 381
Query: 24 LCRESDID 1
LC+ D+D
Sbjct: 382 LCQAMDLD 389
Score = 68.6 bits (166), Expect = 5e-10
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Frame = -1
Query: 357 SNLIYALCREGLFHEVFRIAEEMPQGK-SVEEGFAYGQMIDSLCRAGQNHGASRIVYIMR 181
+ +I C+ G E ++ +M GK S + + +I L G++ A ++ M
Sbjct: 446 NTVINGFCKMGRVEEALKVLNDMMTGKFSAPDAVTFTSIISGLLNVGRSQEARNLLLQML 505
Query: 180 KKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGIEFGYSPSEATYKVLVEALCRESDID 1
+KG P +V+YN IL GL K + A +F E I G + + TY ++VE LC ID
Sbjct: 506 EKGITPGVVTYNAILRGLFKLQLTKEAMAVFDEMITDGVAANSQTYSIIVEGLCESGQID 565
Score = 60.1 bits (144), Expect = 2e-07
Identities = 29/85 (34%), Positives = 49/85 (57%)
Frame = -1
Query: 255 YGQMIDSLCRAGQNHGASRIVYIMRKKGFVPSLVSYNCILHGLTKDRGCMRAYQLFKEGI 76
Y ++ID C + A R++Y M +G PS+VSY +++G +K AY+LF E
Sbjct: 160 YNRLIDQFCSVSLPNVAHRMLYDMINRGHCPSIVSYTTLVNGYSKIGEISDAYKLFDEMP 219
Query: 75 EFGYSPSEATYKVLVEALCRESDID 1
E+G P+ +Y +L+ + R+ DI+
Sbjct: 220 EWGVVPNSLSYSLLIRGVLRKRDIE 244
Score = 55.1 bits (131), Expect = 6e-06
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Frame = -1
Query: 372 NSAAFSNLIYALCREGLFHEVFRIAEEMPQGKSVEEGFAYGQMIDSLCRAGQNHGASRIV 193
NS +S ++ LC G + +E+ + + F Y ++ LCR+G + A +
Sbjct: 547 NSQTYSIIVEGLCESGQIDGAKKFWDEVIWPSKIHDDFVYAAILKGLCRSGHLNEAIHFL 606
Query: 192 YIMRKKGFVPSLVSYNCILHGLTKDRGC-----MRAYQLFKEGIEFGYSPSEATYKVL 34
Y + G P++VSYN ++ DR C AYQ+ E + G +P T++ L
Sbjct: 607 YELVDSGVNPNIVSYNIVI-----DRACSLGMKREAYQIAGEMQKNGLTPDAVTWRTL 659