BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022387
         (456 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD43492.1| putative retroelement pol polyprotein [Arabidops...    86   2e-15
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...    86   2e-15
gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [...    86   2e-15
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...    84   1e-14
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ...    83   3e-14

>dbj|BAD43492.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 207

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
 Frame = -3

Query: 334 SRYQNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQVCKKR 155
           +R + K      SF++RGRGF Q       +  NS   +      ++    V CQ+C K 
Sbjct: 56  NRGKGKSNRGRNSFSTRGRGFHQQ-----ISSTNSSSGS------QSGGTSVVCQICGKM 104

Query: 154 GYNALKCWYRFDNSYQDDQVPQSLAALHLNSPTE---SEWLPDSGATTHITDDP 2
           G+ ALKCW+RF+NSYQ +++P++LAA+ +   T+   +EWLPDS AT H+T+ P
Sbjct: 105 GHPALKCWHRFNNSYQYEELPRALAAMRITDITDQHGNEWLPDSAATAHVTNSP 158


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
 Frame = -3

Query: 334 SRYQNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQVCKKR 155
           +R + K      SF++RGRGF Q       +  NS   +      ++    V CQ+C K 
Sbjct: 244 NRGKGKSNRGRNSFSTRGRGFHQQ-----ISSTNSSSGS------QSGGTSVVCQICGKM 292

Query: 154 GYNALKCWYRFDNSYQDDQVPQSLAALHLNSPTE---SEWLPDSGATTHITDDP 2
           G+ ALKCW+RF+NSYQ +++P++LAA+ +   T+   +EWLPDS AT H+T+ P
Sbjct: 293 GHPALKCWHRFNNSYQYEELPRALAAMRITDITDQHGNEWLPDSAATAHVTNSP 346


>gb|AAK44121.1|AF370306_1 putative retroelement pol polyprotein [Arabidopsis thaliana]
           gi|17104755|gb|AAL34266.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|51971701|dbj|BAD44515.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|51971723|dbj|BAD44526.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
           gi|110741320|dbj|BAF02210.1| putative retroelement pol
           polyprotein [Arabidopsis thaliana]
          Length = 405

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
 Frame = -3

Query: 334 SRYQNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQVCKKR 155
           +R + K      SF++RGRGF Q       +  NS   +      ++    V CQ+C K 
Sbjct: 254 NRGKGKSNRGRNSFSTRGRGFHQQ-----ISSTNSSSGS------QSGGTSVVCQICGKM 302

Query: 154 GYNALKCWYRFDNSYQDDQVPQSLAALHLNSPTE---SEWLPDSGATTHITDDP 2
           G+ ALKCW+RF+NSYQ +++P++LAA+ +   T+   +EWLPDS AT H+T+ P
Sbjct: 303 GHPALKCWHRFNNSYQYEELPRALAAMRITDITDQHGNEWLPDSAATAHVTNSP 356


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
 Frame = -3

Query: 325 QNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQVCKKRGYN 146
           ++  G    SF++RGRGF Q                +P    +A  + + CQ+C K G++
Sbjct: 244 RSNSGSGKSSFSTRGRGFHQQI--------------SPTSGSQAGNSGLVCQICGKAGHH 289

Query: 145 ALKCWYRFDNSYQDDQVPQSLAALHLNSPTE---SEWLPDSGATTHITDD 5
           ALKCW+RFDNSYQ + +P +LA + +   T+    EW+PDS A+ H+T++
Sbjct: 290 ALKCWHRFDNSYQHEDLPMALATMRITDVTDHHGHEWIPDSAASAHVTNN 339


>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 2301

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 3/119 (2%)
 Frame = -3

Query: 349 GQRSSSRYQNKRGGYNPSFTSRGRGFTQSS*RPSYNQRNSQPNNAPPQIERAPTNDVYCQ 170
           G+   +R + +  G    F++RGRGF Q       +  +S  ++     E  P     CQ
Sbjct: 236 GRPFFTRNRGRNRGGRSFFSTRGRGFPQH-----LSSSSSSRSSVSADSEARPV----CQ 286

Query: 169 VCKKRGYNALKCWYRFDNSYQDDQVPQSLAALHLNSPTES---EWLPDSGATTHITDDP 2
           +C K G+ A++CW+RFDNSYQ D++  +LAA+ ++   +S   EW PD+GA+ HIT+ P
Sbjct: 287 ICGKSGHEAMRCWHRFDNSYQLDEMHNALAAMRVSDMIDSRGGEWFPDTGASAHITNTP 345