BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022370
         (913 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi...   302   8e-80
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]   301   1e-79
ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   297   3e-78
gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]   289   7e-76
ref|XP_003595043.1| Pentatricopeptide repeat-containing protein ...   289   7e-76

>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
            mitochondrial-like [Vitis vinifera]
          Length = 993

 Score =  302 bits (773), Expect = 8e-80
 Identities = 154/304 (50%), Positives = 207/304 (68%)
 Frame = +1

Query: 1    GLCKVGRTSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMC 180
            GLCK GRTSEA E+S  I GD  TF+TLLHGY++E N+ GILETKRR+EE G+ +D+VMC
Sbjct: 307  GLCKAGRTSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMC 366

Query: 181  NVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRG 360
            N +IKAL+M+ A EDAY+ +KGM  M L+ DSVTY TMI+GYC+  RI+EALEIFD  R 
Sbjct: 367  NTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVSRIEEALEIFDEFRK 426

Query: 361  TSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGG 540
            T S+++V CY  +I  LC  G+VDMAI+VFIEL  K L     TY +L+++ F  +   G
Sbjct: 427  T-SISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGAEG 485

Query: 541  VLDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMEMRKKCLSMTRKCYYVILK 720
            VL FV   E LG EAF ++ + AI  LC+     +A +VYM MR+K   +T + YY ILK
Sbjct: 486  VLKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILK 545

Query: 721  GLMSTGSKLLIPIMLNSYVKEYGLSESKIGMILVTYLCEKDVTKAISLLDKMKDNNLLIA 900
            GL+S   K L    LN+++KEYG+ E ++  +LV Y+C KD  KA+  L  ++ N   +A
Sbjct: 546  GLISDDQKGLGWPFLNTFLKEYGIDEPRVSKVLVPYMCMKDADKALFFLTNIQVNTSAVA 605

Query: 901  IPIA 912
             P++
Sbjct: 606  FPVS 609



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 61/285 (21%), Positives = 117/285 (41%), Gaps = 1/285 (0%)
 Frame = +1

Query: 40   ISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKALIMLRAF 219
            I   I  D  ++T L+ G+ +E  +   +    ++++ G++ ++V    ++         
Sbjct: 185  IEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKL 244

Query: 220  EDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVI 399
            ++AY+ FK +  +G+  D   Y+T+IDG+C  G ID    + +         ++  YN I
Sbjct: 245  DEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSI 304

Query: 400  IRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGGVLDFVQEFEKLGH 579
            I  LC  G    A +V      K +  +  T+  LL       N  G+L+  +  E+ G 
Sbjct: 305  INGLCKAGRTSEADEV-----SKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGV 359

Query: 580  EAFQSVCSDAIYILCREACFESAFDVYMEMRKKCLSMTRKCYYVILKGLMSTGSKLLIPI 759
                 +C+  I  L      E A+  Y  M    L      Y  ++ G     S++   +
Sbjct: 360  CIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRV-SRIEEAL 418

Query: 760  MLNSYVKEYGLSESKIGMILVTYLCEKD-VTKAISLLDKMKDNNL 891
             +    ++  +S       ++  LC K  V  AI +  ++ +  L
Sbjct: 419  EIFDEFRKTSISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGL 463



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 5/179 (2%)
 Frame = +1

Query: 4   LCKVGRTSEASEISNSIFGDNFTFTTLLH-----GYVQENNLVGILETKRRVEESGIRMD 168
           L ++GR  E S++ + +  + F F  + +     GY +E  LV  +   + + E GI  D
Sbjct: 133 LFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPD 192

Query: 169 VVMCNVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFD 348
            V   +LI         E A    + M + GL P+ VTY  ++ G+CK G++DEA  +F 
Sbjct: 193 TVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFK 252

Query: 349 ACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNA 525
                        Y  +I   C  G +D    +  ++  + + P   TY +++  L  A
Sbjct: 253 MVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKA 311



 Score = 71.2 bits (173), Expect = 3e-10
 Identities = 43/170 (25%), Positives = 82/170 (48%)
 Frame = +1

Query: 61   DNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKALIMLRAFEDAYSAF 240
            D   ++ ++    +E +L   L+    V++ GI +++   N +I  L        A+  F
Sbjct: 638  DLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLF 697

Query: 241  KGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWN 420
              + ++ L+P  +TY T+ID  CK G + +A ++F+          V  YN +I   C  
Sbjct: 698  DSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKF 757

Query: 421  GLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGGVLDFVQEFEK 570
            G ++ A+++ I+L  + + P+  T  AL+    +  +  G L F  EF+K
Sbjct: 758  GNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKK 807



 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 3/206 (1%)
 Frame = +1

Query: 130  TKRRVEESGIRMDVVMCNVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYC 309
            T  +V  S +   V +   L K   +L A++    A + +P M    D V Y  MID  C
Sbjct: 595  TNIQVNTSAVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVM----DLVDYSIMIDVLC 650

Query: 310  KTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERA 489
            K G +D+AL++    +       +  YN +I  LC  G +  A  +F  L    LVP   
Sbjct: 651  KEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEI 710

Query: 490  TYVALLRSLFNARNEGGVLDFVQEFEKLGHEAFQ---SVCSDAIYILCREACFESAFDVY 660
            TY  L+ SL     EG +LD  Q FEK+  + F     V +  I   C+    E A ++ 
Sbjct: 711  TYATLIDSLC---KEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLL 767

Query: 661  MEMRKKCLSMTRKCYYVILKGLMSTG 738
            ++++ +C+         ++ G    G
Sbjct: 768  IDLKARCIKPDEFTVSALINGYCHKG 793


>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
          Length = 993

 Score =  301 bits (772), Expect = 1e-79
 Identities = 154/304 (50%), Positives = 207/304 (68%)
 Frame = +1

Query: 1    GLCKVGRTSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMC 180
            GLCK GRTSEA E+S  I GD  TF+TLLHGY++E N+ GILETKRR+EE G+ +D+VMC
Sbjct: 307  GLCKAGRTSEADEVSKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGVCIDLVMC 366

Query: 181  NVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRG 360
            N +IKAL+M+ A EDAY+ +KGM  M L+ DSVTY TMI+GYC+  RI+EALEIFD  R 
Sbjct: 367  NTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMINGYCRVXRIEEALEIFDEFRK 426

Query: 361  TSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGG 540
            T S+++V CY  +I  LC  G+VDMAI+VFIEL  K L     TY +L+++ F  +   G
Sbjct: 427  T-SISSVSCYKCMIYGLCRKGMVDMAIEVFIELNEKGLELVSGTYTSLIKASFEEQGAEG 485

Query: 541  VLDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMEMRKKCLSMTRKCYYVILK 720
            VL FV   E LG EAF ++ + AI  LC+     +A +VYM MR+K   +T + YY ILK
Sbjct: 486  VLKFVHRIENLGREAFDTISNSAICFLCKRGFSLAACEVYMRMRRKQSVVTSRSYYSILK 545

Query: 721  GLMSTGSKLLIPIMLNSYVKEYGLSESKIGMILVTYLCEKDVTKAISLLDKMKDNNLLIA 900
            GL+S   K L    LN+++KEYG+ E ++  +LV Y+C KD  KA+  L  ++ N   +A
Sbjct: 546  GLISDDQKGLGWPFLNTFLKEYGIDEPRVSKVLVPYMCMKDADKALFFLTNIQVNTSAVA 605

Query: 901  IPIA 912
             P++
Sbjct: 606  FPVS 609



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 52/228 (22%), Positives = 95/228 (41%)
 Frame = +1

Query: 40  ISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKALIMLRAF 219
           I   I  D  ++T L+ G+ +E  +   +    ++++ G++ ++V    ++         
Sbjct: 185 IEKGIAPDTVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKL 244

Query: 220 EDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVI 399
           ++AY+ FK +  +G+  D   Y+T+IDG+C  G ID    + +         ++  YN I
Sbjct: 245 DEAYTLFKMVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSI 304

Query: 400 IRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGGVLDFVQEFEKLGH 579
           I  LC  G    A +V      K +  +  T+  LL       N  G+L+  +  E+ G 
Sbjct: 305 INGLCKAGRTSEADEV-----SKGIAGDAVTFSTLLHGYIEEENVKGILETKRRLEEDGV 359

Query: 580 EAFQSVCSDAIYILCREACFESAFDVYMEMRKKCLSMTRKCYYVILKG 723
                +C+  I  L      E A+  Y  M    L      Y  ++ G
Sbjct: 360 CIDLVMCNTIIKALLMVGALEDAYAFYKGMSGMDLVADSVTYCTMING 407



 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 43/170 (25%), Positives = 82/170 (48%)
 Frame = +1

Query: 61   DNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKALIMLRAFEDAYSAF 240
            D   ++ ++    +E +L   L+    V++ GI +++   N +I  L        A+  F
Sbjct: 638  DLVDYSIMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLF 697

Query: 241  KGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWN 420
              + ++ L+P  +TY T+ID  CK G + +A ++F+          V  YN +I   C  
Sbjct: 698  DSLEKIDLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKF 757

Query: 421  GLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGGVLDFVQEFEK 570
            G ++ A+++ I+L  + + P+  T  AL+    +  +  G L F  EF+K
Sbjct: 758  GNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKK 807



 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 5/179 (2%)
 Frame = +1

Query: 4   LCKVGRTSEASEISNSIFGDNFTFTTLLH-----GYVQENNLVGILETKRRVEESGIRMD 168
           L ++GR  E S++ + +  + F F  + +     GY +E  LV  +   + + E GI  D
Sbjct: 133 LFQLGRVREVSDLVSWMEREEFVFDVVFYSSWICGYFREGVLVEAIRKHKEMIEKGIAPD 192

Query: 169 VVMCNVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFD 348
            V   +LI         E A    + M + GL P+ VTY  ++ G+CK G++DEA  +F 
Sbjct: 193 TVSYTILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFK 252

Query: 349 ACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNA 525
                        Y  +I   C  G +D    +  ++  + + P   TY +++  L  A
Sbjct: 253 MVENLGIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKA 311



 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 3/206 (1%)
 Frame = +1

Query: 130  TKRRVEESGIRMDVVMCNVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYC 309
            T  +V  S +   V +   L K   +L A++    A + +P M    D V Y  MID  C
Sbjct: 595  TNIQVNTSAVAFPVSVLKSLKKNGRILDAYKLVIGAEENLPVM----DLVDYSIMIDVLC 650

Query: 310  KTGRIDEALEIFDACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERA 489
            K G +D+AL++    +       +  YN +I  LC  G +  A  +F  L    LVP   
Sbjct: 651  KEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKIDLVPSEI 710

Query: 490  TYVALLRSLFNARNEGGVLDFVQEFEKLGHEAFQ---SVCSDAIYILCREACFESAFDVY 660
            TY  L+ SL     EG +LD  Q FEK+  + F     V +  I   C+    E A ++ 
Sbjct: 711  TYATLIDSLC---KEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLL 767

Query: 661  MEMRKKCLSMTRKCYYVILKGLMSTG 738
            ++++ +C+         ++ G    G
Sbjct: 768  IDLKARCIKPDEFTVSALINGYCHKG 793


>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
            mitochondrial-like [Glycine max]
          Length = 1064

 Score =  297 bits (760), Expect = 3e-78
 Identities = 150/296 (50%), Positives = 205/296 (69%)
 Frame = +1

Query: 1    GLCKVGRTSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMC 180
            GL K GRTSEA E+  ++  D  T++TLLHGY++E N+ GIL+TKRR+EESGI MDVVMC
Sbjct: 379  GLSKHGRTSEADELLKNVAADVITYSTLLHGYMEEENIPGILQTKRRLEESGISMDVVMC 438

Query: 181  NVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRG 360
            NVLI+AL M+ AFED Y+ +KGMPEM L+P+SVTY TMIDGYCK GRI+EALE+FD  R 
Sbjct: 439  NVLIRALFMMGAFEDVYALYKGMPEMDLIPNSVTYCTMIDGYCKVGRIEEALEVFDEFRK 498

Query: 361  TSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGG 540
            T  ++++ CYN II  LC NG+ +MAI+  +EL  + L  +  T+  L +++F   N   
Sbjct: 499  T-LISSLACYNSIINGLCKNGMTEMAIEALLELNHEGLELDIGTFRMLTKTIFEENNTKK 557

Query: 541  VLDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMEMRKKCLSMTRKCYYVILK 720
             LD V   E LG + + SVC+D+I++LC+    + A  ++M M+KK LS+T   YY IL+
Sbjct: 558  ALDLVYRMEGLGPDIYSSVCNDSIFLLCQRGLLDDANHMWMMMKKKGLSVTCNSYYSILR 617

Query: 721  GLMSTGSKLLIPIMLNSYVKEYGLSESKIGMILVTYLCEKDVTKAISLLDKMKDNN 888
            G ++ G++  I  +LNS++K+YGL E  +  IL  YLC KDV  AI  L K  DN+
Sbjct: 618  GHLNNGNREQIYPLLNSFLKDYGLVEPMVQKILACYLCLKDVNGAIRFLGKTMDNS 673



 Score = 70.9 bits (172), Expect = 4e-10
 Identities = 78/368 (21%), Positives = 135/368 (36%), Gaps = 76/368 (20%)
 Frame = +1

Query: 4    LCKVGRTSEASEISNSIFGDNFTFTTLLH-----GYVQENNLVGILETKRRVEESGIRMD 168
            LCK+GR  E   +   +  +      +L+     GYV+E  L  +    R + E GI  D
Sbjct: 205  LCKMGRVGEVCGLVQWMEREGLGLDVVLYSAWACGYVEERVLGEVFGRMREMVEKGIGHD 264

Query: 169  VVMCNVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFD 348
             V   VL+     L   E +++    M + G  P+ VTY  ++  YCK G+++EA  +F+
Sbjct: 265  FVSYTVLVDGFSKLGDVEKSFTFLAKMIKEGHRPNKVTYSAIMSAYCKKGKVEEAFGVFE 324

Query: 349  ACRG-----------------------------------TSSVATVGCYNVIIRALCWNG 423
            + +                                    +    +V  YN ++  L  +G
Sbjct: 325  SMKDLGIDLDEYVFVILIDGFGRIGDFDKVFCLFDEMERSGISPSVVAYNAVMNGLSKHG 384

Query: 424  LVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGGVLDFVQEFEKLGHEAFQSVCS 603
                A ++      K +  +  TY  LL       N  G+L   +  E+ G      +C+
Sbjct: 385  RTSEADELL-----KNVAADVITYSTLLHGYMEEENIPGILQTKRRLEESGISMDVVMCN 439

Query: 604  ------------DAIYIL-----------------------CREACFESAFDVYMEMRKK 678
                        + +Y L                       C+    E A +V+ E RK 
Sbjct: 440  VLIRALFMMGAFEDVYALYKGMPEMDLIPNSVTYCTMIDGYCKVGRIEEALEVFDEFRKT 499

Query: 679  CLSMTRKCYYVILKGLMSTG-SKLLIPIMLNSYVKEYGLSESKIGMILVTYLCEKDVTKA 855
             +S +  CY  I+ GL   G +++ I  +L    +   L      M+  T   E +  KA
Sbjct: 500  LIS-SLACYNSIINGLCKNGMTEMAIEALLELNHEGLELDIGTFRMLTKTIFEENNTKKA 558

Query: 856  ISLLDKMK 879
            + L+ +M+
Sbjct: 559  LDLVYRME 566


>gb|ABD28636.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1053

 Score =  289 bits (739), Expect = 7e-76
 Identities = 140/305 (45%), Positives = 211/305 (69%), Gaps = 1/305 (0%)
 Frame = +1

Query: 1    GLCKVGRTSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMC 180
            GL K GRT EA E S ++  D  T++TLLHGY +E+N++GIL+TK+R+EE+GI MDVVMC
Sbjct: 365  GLSKYGRTQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMC 424

Query: 181  NVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRG 360
            NVLI+AL M++A+ED Y+ +KGMPEM L+P+S+TY TMIDGYCK G+I+EALE+FD  R 
Sbjct: 425  NVLIRALFMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFRK 484

Query: 361  TSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGG 540
            T S+++  CYN II  LC  G+V+MAI+  +EL  K L+ +  T+  L++++F   +   
Sbjct: 485  T-SISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKV 543

Query: 541  VLDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMEMRKKCLSMTRKCYYVILK 720
            VLD V   E L  + + ++C+D+I++LC+    + A+ ++M M+KK L +T K Y+ +L+
Sbjct: 544  VLDLVCRMESLELDIYNAICNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLR 603

Query: 721  GLMS-TGSKLLIPIMLNSYVKEYGLSESKIGMILVTYLCEKDVTKAISLLDKMKDNNLLI 897
             L+   G++  I  +LN ++KEYGL E K+  +L  Y+C KDV  A+  L K   N+  +
Sbjct: 604  RLLCVVGNREQILPLLNCFLKEYGLVEPKVQKVLAQYICLKDVDSALRFLGKTSYNSSAV 663

Query: 898  AIPIA 912
              P++
Sbjct: 664  TFPVS 668



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 75/334 (22%), Positives = 127/334 (38%), Gaps = 36/334 (10%)
 Frame = +1

Query: 4    LCKVGRTSEASEISNSIFGDNFTFTTLLH-----GYVQENNLVGILETKRRVEESGIRMD 168
            LCK+GR  E   +   +  D      +L+     GYV+E  LV +    R + E GI  D
Sbjct: 191  LCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHD 250

Query: 169  VVMCNVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFD 348
             V   +LI     L   E +++    M + G++P+ VTY  ++  YCK GRI+EA  +F 
Sbjct: 251  FVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFV 310

Query: 349  ACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVA--------- 501
              +          + V+I      G  D    + +E+  + + P   TY A         
Sbjct: 311  RMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVVNGLSKYG 370

Query: 502  ---------------------LLRSLFNARNEGGVLDFVQEFEKLGHEAFQSVCSDAIYI 618
                                 LL       N  G+L   +  E+ G      +C+  I  
Sbjct: 371  RTQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRA 430

Query: 619  LCREACFESAFDVYMEMRKKCLSMTRKCYYVILKGLMSTGSKLLIPIMLNSYVKEYGLSE 798
            L     +E  + +Y  M +  L      Y  ++ G    G K+   + +    ++  +S 
Sbjct: 431  LFMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVG-KINEALEVFDDFRKTSISS 489

Query: 799  SKIGMILVTYLCEKD-VTKAISLLDKMKDNNLLI 897
                  ++  LC+K  V  AI  L ++    L++
Sbjct: 490  YACYNSIINGLCKKGMVEMAIEALLELDHKGLML 523



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 8/182 (4%)
 Frame = +1

Query: 55  FGDNF--------TFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKALIML 210
           F DNF        T+T +++   +   +  +    R++EE G+ +DVV+ +V +   +  
Sbjct: 170 FFDNFMGSRPNLVTYTAVVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEE 229

Query: 211 RAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRGTSSVATVGCY 390
           +   + +   + M E G+  D V+Y  +IDG+ K G ++++            +     Y
Sbjct: 230 KVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTY 289

Query: 391 NVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGGVLDFVQEFEK 570
             I+ A C  G ++ A  +F+ +    +  +   +V L+       +   V   + E EK
Sbjct: 290 TAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEK 349

Query: 571 LG 576
            G
Sbjct: 350 RG 351


>ref|XP_003595043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355484091|gb|AES65294.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 1070

 Score =  289 bits (739), Expect = 7e-76
 Identities = 140/305 (45%), Positives = 211/305 (69%), Gaps = 1/305 (0%)
 Frame = +1

Query: 1    GLCKVGRTSEASEISNSIFGDNFTFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMC 180
            GL K GRT EA E S ++  D  T++TLLHGY +E+N++GIL+TK+R+EE+GI MDVVMC
Sbjct: 382  GLSKYGRTQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMC 441

Query: 181  NVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRG 360
            NVLI+AL M++A+ED Y+ +KGMPEM L+P+S+TY TMIDGYCK G+I+EALE+FD  R 
Sbjct: 442  NVLIRALFMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVGKINEALEVFDDFRK 501

Query: 361  TSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGG 540
            T S+++  CYN II  LC  G+V+MAI+  +EL  K L+ +  T+  L++++F   +   
Sbjct: 502  T-SISSYACYNSIINGLCKKGMVEMAIEALLELDHKGLMLDTGTHRLLMKTIFKENSSKV 560

Query: 541  VLDFVQEFEKLGHEAFQSVCSDAIYILCREACFESAFDVYMEMRKKCLSMTRKCYYVILK 720
            VLD V   E L  + + ++C+D+I++LC+    + A+ ++M M+KK L +T K Y+ +L+
Sbjct: 561  VLDLVCRMESLELDIYNAICNDSIFLLCKRGLLDDAYQLWMAMKKKGLPVTCKSYHSLLR 620

Query: 721  GLMS-TGSKLLIPIMLNSYVKEYGLSESKIGMILVTYLCEKDVTKAISLLDKMKDNNLLI 897
             L+   G++  I  +LN ++KEYGL E K+  +L  Y+C KDV  A+  L K   N+  +
Sbjct: 621  RLLCVVGNREQILPLLNCFLKEYGLVEPKVQKVLAQYICLKDVDSALRFLGKTSYNSSAV 680

Query: 898  AIPIA 912
              P++
Sbjct: 681  TFPVS 685



 Score = 77.0 bits (188), Expect = 6e-12
 Identities = 75/334 (22%), Positives = 127/334 (38%), Gaps = 36/334 (10%)
 Frame = +1

Query: 4    LCKVGRTSEASEISNSIFGDNFTFTTLLH-----GYVQENNLVGILETKRRVEESGIRMD 168
            LCK+GR  E   +   +  D      +L+     GYV+E  LV +    R + E GI  D
Sbjct: 208  LCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEEKVLVEVFRKMREMVEKGICHD 267

Query: 169  VVMCNVLIKALIMLRAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFD 348
             V   +LI     L   E +++    M + G++P+ VTY  ++  YCK GRI+EA  +F 
Sbjct: 268  FVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTYTAIMSAYCKKGRIEEAFGLFV 327

Query: 349  ACRGTSSVATVGCYNVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVA--------- 501
              +          + V+I      G  D    + +E+  + + P   TY A         
Sbjct: 328  RMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEKRGIGPNVVTYNAVVNGLSKYG 387

Query: 502  ---------------------LLRSLFNARNEGGVLDFVQEFEKLGHEAFQSVCSDAIYI 618
                                 LL       N  G+L   +  E+ G      +C+  I  
Sbjct: 388  RTQEADEFSKNVTADVVTYSTLLHGYTEEDNVLGILQTKKRLEEAGISMDVVMCNVLIRA 447

Query: 619  LCREACFESAFDVYMEMRKKCLSMTRKCYYVILKGLMSTGSKLLIPIMLNSYVKEYGLSE 798
            L     +E  + +Y  M +  L      Y  ++ G    G K+   + +    ++  +S 
Sbjct: 448  LFMMQAYEDVYALYKGMPEMDLVPNSITYCTMIDGYCKVG-KINEALEVFDDFRKTSISS 506

Query: 799  SKIGMILVTYLCEKD-VTKAISLLDKMKDNNLLI 897
                  ++  LC+K  V  AI  L ++    L++
Sbjct: 507  YACYNSIINGLCKKGMVEMAIEALLELDHKGLML 540



 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 39/182 (21%), Positives = 79/182 (43%), Gaps = 8/182 (4%)
 Frame = +1

Query: 55  FGDNF--------TFTTLLHGYVQENNLVGILETKRRVEESGIRMDVVMCNVLIKALIML 210
           F DNF        T+T +++   +   +  +    R++EE G+ +DVV+ +V +   +  
Sbjct: 187 FFDNFMGSRPNLVTYTAVVNALCKLGRVDEVCGLVRKMEEDGLDLDVVLYSVWVCGYVEE 246

Query: 211 RAFEDAYSAFKGMPEMGLLPDSVTYLTMIDGYCKTGRIDEALEIFDACRGTSSVATVGCY 390
           +   + +   + M E G+  D V+Y  +IDG+ K G ++++            +     Y
Sbjct: 247 KVLVEVFRKMREMVEKGICHDFVSYTILIDGFSKLGDVEKSFTFLAKMIKEGIIPNKVTY 306

Query: 391 NVIIRALCWNGLVDMAIDVFIELIGKALVPERATYVALLRSLFNARNEGGVLDFVQEFEK 570
             I+ A C  G ++ A  +F+ +    +  +   +V L+       +   V   + E EK
Sbjct: 307 TAIMSAYCKKGRIEEAFGLFVRMKDMGIELDEFVFVVLIDGFGRVGDFDRVFQLLVEMEK 366

Query: 571 LG 576
            G
Sbjct: 367 RG 368