BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022338
         (575 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja...   157   1e-36
gb|ABB46931.2| retrotransposon protein, putative, unclassified [...   157   1e-36
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   156   2e-36
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...   156   2e-36
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   155   3e-36

>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1888

 Score =  157 bits (397), Expect = 1e-36
 Identities = 82/191 (42%), Positives = 111/191 (58%)
 Frame = +3

Query: 3    EVSGVVNSFFTDLFSTDSPKTDSSILNLFKPVITKRENDILGKIPTDTEIWNVVKKLHPL 182
            E+  +   +F  LF+ D     S + +L KP +T   N+ L K  ++ EI N + ++ PL
Sbjct: 955  ELERMATEYFQRLFTADPSIDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPL 1014

Query: 183  KAPGPDGFQGVFYQSCWDIVGPLITKTVKNFFLYNMLPPDLNETFITLIPKIPSPDHISK 362
            KAPGPDGF G FYQ  W I+   I + V+ FF    +P  +NET I LIPK   P  +  
Sbjct: 1015 KAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKD 1074

Query: 363  FRPISLCNFTYKIISKLLANRLKALLHKIISPFQGAFVKGRFIGDNIGLASEIFHHMSRM 542
            FRPISLCN  YKI+SK L NRL+ +L  ++S  Q AFV GR I DN  +A E FHH+ R 
Sbjct: 1075 FRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRN 1134

Query: 543  EKKKQGWLALK 575
            +  +  + A K
Sbjct: 1135 KNPENAYSAYK 1145


>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1853

 Score =  157 bits (397), Expect = 1e-36
 Identities = 82/191 (42%), Positives = 111/191 (58%)
 Frame = +3

Query: 3    EVSGVVNSFFTDLFSTDSPKTDSSILNLFKPVITKRENDILGKIPTDTEIWNVVKKLHPL 182
            E+  +   +F  LF+ D     S + +L KP +T   N+ L K  ++ EI N + ++ PL
Sbjct: 920  ELERMATEYFQRLFTADPSIDHSRVTSLMKPKVTDAMNEELCKTFSEEEIANALFQIGPL 979

Query: 183  KAPGPDGFQGVFYQSCWDIVGPLITKTVKNFFLYNMLPPDLNETFITLIPKIPSPDHISK 362
            KAPGPDGF G FYQ  W I+   I + V+ FF    +P  +NET I LIPK   P  +  
Sbjct: 980  KAPGPDGFPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKD 1039

Query: 363  FRPISLCNFTYKIISKLLANRLKALLHKIISPFQGAFVKGRFIGDNIGLASEIFHHMSRM 542
            FRPISLCN  YKI+SK L NRL+ +L  ++S  Q AFV GR I DN  +A E FHH+ R 
Sbjct: 1040 FRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRN 1099

Query: 543  EKKKQGWLALK 575
            +  +  + A K
Sbjct: 1100 KNPENAYSAYK 1110


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  156 bits (395), Expect = 2e-36
 Identities = 78/191 (40%), Positives = 115/191 (60%)
 Frame = +3

Query: 3    EVSGVVNSFFTDLFSTDSPKTDSSILNLFKPVITKRENDILGKIPTDTEIWNVVKKLHPL 182
            E+      FFT ++ ++           FKP++T++ ND L K  +D EI+N +  +   
Sbjct: 766  EIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDD 825

Query: 183  KAPGPDGFQGVFYQSCWDIVGPLITKTVKNFFLYNMLPPDLNETFITLIPKIPSPDHISK 362
            KAPGPDG    FY+SCW+IVGP + K VK FF  + +   +N T I +IPKI +P+ +S 
Sbjct: 826  KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 885

Query: 363  FRPISLCNFTYKIISKLLANRLKALLHKIISPFQGAFVKGRFIGDNIGLASEIFHHMSRM 542
            +RPI+LCN  YKIISK L  RLK  L  I+S  Q AF+ GR + DN+ +A E+ H +   
Sbjct: 886  YRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTR 945

Query: 543  EKKKQGWLALK 575
            ++  Q ++A+K
Sbjct: 946  KRVSQSYMAVK 956


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score =  156 bits (395), Expect = 2e-36
 Identities = 78/191 (40%), Positives = 115/191 (60%)
 Frame = +3

Query: 3    EVSGVVNSFFTDLFSTDSPKTDSSILNLFKPVITKRENDILGKIPTDTEIWNVVKKLHPL 182
            E+      FFT ++ ++           FKP++T++ ND L K  +D EI+N +  +   
Sbjct: 746  EIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDD 805

Query: 183  KAPGPDGFQGVFYQSCWDIVGPLITKTVKNFFLYNMLPPDLNETFITLIPKIPSPDHISK 362
            KAPGPDG    FY+SCW+IVGP + K VK FF  + +   +N T I +IPKI +P+ +S 
Sbjct: 806  KAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSD 865

Query: 363  FRPISLCNFTYKIISKLLANRLKALLHKIISPFQGAFVKGRFIGDNIGLASEIFHHMSRM 542
            +RPI+LCN  YKIISK L  RLK  L  I+S  Q AF+ GR + DN+ +A E+ H +   
Sbjct: 866  YRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTR 925

Query: 543  EKKKQGWLALK 575
            ++  Q ++A+K
Sbjct: 926  KRVSQSYMAVK 936


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  155 bits (393), Expect = 3e-36
 Identities = 79/191 (41%), Positives = 116/191 (60%)
 Frame = +3

Query: 3    EVSGVVNSFFTDLFSTDSPKTDSSILNLFKPVITKRENDILGKIPTDTEIWNVVKKLHPL 182
            E+      FFT++FST+  K        FK  +T   N  L K  +DTEI++ + ++   
Sbjct: 540  EIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDD 599

Query: 183  KAPGPDGFQGVFYQSCWDIVGPLITKTVKNFFLYNMLPPDLNETFITLIPKIPSPDHISK 362
            KAPGPDG    FY++CWDIVG  +   VK FF  + + P +N T I +IPKI +P  +S 
Sbjct: 600  KAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSD 659

Query: 363  FRPISLCNFTYKIISKLLANRLKALLHKIISPFQGAFVKGRFIGDNIGLASEIFHHMSRM 542
            +RPI+LCN  YK+ISK L NRLK+ L+ I+S  Q AF+ GR I DN+ +A E+ H +   
Sbjct: 660  YRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVR 719

Query: 543  EKKKQGWLALK 575
            ++  + ++A+K
Sbjct: 720  KRVSKTYMAVK 730