BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022328
         (823 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containi...   294   1e-77
ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containi...   292   7e-77
emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]   291   1e-76
ref|XP_002517926.1| pentatricopeptide repeat-containing protein,...   274   2e-71
ref|XP_004136821.1| PREDICTED: pentatricopeptide repeat-containi...   270   3e-70

>ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score =  294 bits (753), Expect = 1e-77
 Identities = 136/273 (49%), Positives = 197/273 (72%)
 Frame = +2

Query: 2   IEKAEAFMQQMKQLGYARSPHSYNVLLSLYSKVGRYEKLESLVEEMKVNGVHADKFTMSI 181
           ++KAEA MQ+++ LG+ R+   YN L+++Y ++G +EKL+ L+ EM+  G+  DKFT++I
Sbjct: 165 VDKAEAIMQRLRDLGFVRTALGYNTLMNVYYRMGNWEKLDILMHEMEEKGIFCDKFTLAI 224

Query: 182 QMAAYAANSNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKIGCIDKALQTLKNSEKL 361
           +++AYAA SNI G++ I+  ME +P+II+DWNSYA+ A+GY+K+G +DK L  +K  E+L
Sbjct: 225 RLSAYAAASNIVGIDNIVTRMESDPRIILDWNSYAVVAHGYLKVGLVDKTLVMMKKLEEL 284

Query: 362 ITGKQRRVAYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIGSLLKLDDIDGA 541
           I  K   VA+D LL +YA  R +++L R+W LYK  EK+ N  ++ MI SLLK DDID A
Sbjct: 285 IDAKGSNVAFDNLLKLYAETRQRDELDRVWMLYKKKEKIYNKGYMAMISSLLKFDDIDAA 344

Query: 542 EKILEEWGSGHTSYDFRVPNLLIAAYCKNGLVEKAEMLLNKTVEKGKKPLSSTWGYLATG 721
           EK+LEEW S   SYDFRVPN LI AYC+ GL EKAE L+NK + KG  PL  TW YLA G
Sbjct: 345 EKVLEEWESRRLSYDFRVPNFLIDAYCRKGLTEKAEALVNKILTKGGNPLVDTWFYLANG 404

Query: 722 YVAANEFPKALKAMESALLARRPKWMLNRDTLS 820
           Y+  ++ PKA++A++ A++   P W  +++TL+
Sbjct: 405 YLEDSQIPKAVEALKKAVVVCPPNWKPSKNTLA 437


>ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial [Vitis vinifera]
          Length = 499

 Score =  292 bits (747), Expect = 7e-77
 Identities = 138/274 (50%), Positives = 200/274 (72%)
 Frame = +2

Query: 2   IEKAEAFMQQMKQLGYARSPHSYNVLLSLYSKVGRYEKLESLVEEMKVNGVHADKFTMSI 181
           +EKAEA MQ+M+ +G+ ++  SYNV+L LYS++G++EKL++L++EM+ NG+  D FT  I
Sbjct: 152 LEKAEAIMQEMRDMGFVKTL-SYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCI 210

Query: 182 QMAAYAANSNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKIGCIDKALQTLKNSEKL 361
           ++ AY A S+++GMEK+L  +E +P +  DWN+Y +AANGY+K    +KA++ LK SE+ 
Sbjct: 211 RLNAYCATSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQF 270

Query: 362 ITGKQRRVAYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIGSLLKLDDIDGA 541
           I+G+ RR  Y+ LLT+YA   +K ++YRIW LYK+  K  NT ++ M+ SLLKLDD+DGA
Sbjct: 271 ISGRSRRFGYEILLTLYATMGNKTEVYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGA 330

Query: 542 EKILEEWGSGHTSYDFRVPNLLIAAYCKNGLVEKAEMLLNKTVEKGKKPLSSTWGYLATG 721
           EK  EEW SG+  +DFRVPNLLI AYCK GL+EKAE L+++ +E+G++P++ TW  LA G
Sbjct: 331 EKTFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAG 390

Query: 722 YVAANEFPKALKAMESALLARRPKWMLNRDTLSA 823
           Y   N+  KA+  ++ ALLA    W  N  TLSA
Sbjct: 391 YHENNQMEKAVDTLKKALLATSQGWKPNPVTLSA 424


>emb|CAN73453.1| hypothetical protein VITISV_024964 [Vitis vinifera]
          Length = 499

 Score =  291 bits (745), Expect = 1e-76
 Identities = 138/274 (50%), Positives = 199/274 (72%)
 Frame = +2

Query: 2   IEKAEAFMQQMKQLGYARSPHSYNVLLSLYSKVGRYEKLESLVEEMKVNGVHADKFTMSI 181
           +EKAEA MQ+M+ +G+ ++  SYNV+L LYS++G++EKL++L++EM+ NG+  D FT  I
Sbjct: 152 LEKAEAIMQEMRDMGFVKTL-SYNVMLGLYSRLGKHEKLDNLMQEMEENGIGLDSFTYCI 210

Query: 182 QMAAYAANSNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKIGCIDKALQTLKNSEKL 361
           ++ AY A S+++GMEK+L  +E +P +  DWN+Y +AANGY+K    +KA++ LK SE+ 
Sbjct: 211 RLNAYCATSDMEGMEKLLMKLETDPAVNSDWNAYIVAANGYLKADLKEKAVEMLKKSEQF 270

Query: 362 ITGKQRRVAYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIGSLLKLDDIDGA 541
           I+G+ RR  Y+ LLT+YA   +K + YRIW LYK+  K  NT ++ M+ SLLKLDD+DGA
Sbjct: 271 ISGRSRRFGYEILLTLYATMGNKTEXYRIWNLYKTIGKFFNTGYVAMVSSLLKLDDMDGA 330

Query: 542 EKILEEWGSGHTSYDFRVPNLLIAAYCKNGLVEKAEMLLNKTVEKGKKPLSSTWGYLATG 721
           EK  EEW SG+  +DFRVPNLLI AYCK GL+EKAE L+++ +E+G++P++ TW  LA G
Sbjct: 331 EKTFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQGEEPIAVTWDALAAG 390

Query: 722 YVAANEFPKALKAMESALLARRPKWMLNRDTLSA 823
           Y   N+  KA+  ++ ALLA    W  N  TLSA
Sbjct: 391 YHENNQMEKAVDTLKKALLATSQGWKPNPVTLSA 424


>ref|XP_002517926.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542908|gb|EEF44444.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 504

 Score =  274 bits (700), Expect = 2e-71
 Identities = 131/272 (48%), Positives = 190/272 (69%)
 Frame = +2

Query: 8   KAEAFMQQMKQLGYARSPHSYNVLLSLYSKVGRYEKLESLVEEMKVNGVHADKFTMSIQM 187
           KAEA MQ+MK LG+ ++  SYNV+LSLYS +G YEKL+ LV+EM+ NG+  D+ T  I++
Sbjct: 158 KAEATMQKMKDLGFVKNSLSYNVMLSLYSHMGNYEKLDPLVQEMEENGISCDRITYCIRL 217

Query: 188 AAYAANSNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKIGCIDKALQTLKNSEKLIT 367
            A   +S+I+GMEK+L  MEV+P I + +++Y IAANGY+K G +DK L  LK SE+LI+
Sbjct: 218 NACVNSSDIEGMEKLLMKMEVDPNISVGFHAYVIAANGYLKAGLVDKTLIMLKRSEQLIS 277

Query: 368 GKQRRVAYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIGSLLKLDDIDGAEK 547
           G  RR AY+FLLT+Y  + +K ++YRIW  YK   +  N+ ++CMI SLLKLDDIDGAE+
Sbjct: 278 GNTRRFAYEFLLTLYTASGNKAEVYRIWNKYKEIGRFFNSGYICMISSLLKLDDIDGAER 337

Query: 548 ILEEWGSGHTSYDFRVPNLLIAAYCKNGLVEKAEMLLNKTVEKGKKPLSSTWGYLATGYV 727
           I EEW S    +D R+PN ++  Y + G +EKAE  +NK V  G++P +++W +LA GY 
Sbjct: 338 IFEEWDSKKVLFDIRIPNSMVNVYSRKGHLEKAETYINKIVASGEEPDATSWNHLAAGYH 397

Query: 728 AANEFPKALKAMESALLARRPKWMLNRDTLSA 823
           ++ +  KA++ +  A+   +P W  +  TLSA
Sbjct: 398 SSGQMTKAVETIRKAISVSKPGWKPSLLTLSA 429


>ref|XP_004136821.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Cucumis sativus]
          Length = 486

 Score =  270 bits (690), Expect = 3e-70
 Identities = 121/274 (44%), Positives = 195/274 (71%)
 Frame = +2

Query: 2   IEKAEAFMQQMKQLGYARSPHSYNVLLSLYSKVGRYEKLESLVEEMKVNGVHADKFTMSI 181
           ++KAEA MQ+M+++G+ ++P SYN +L+LY+++G++EKL+ LV+EM+  G+  ++FT ++
Sbjct: 153 LKKAEAIMQKMREVGFMKTPLSYNAMLNLYAQLGKHEKLDELVKEMEEMGIGHNRFTYNV 212

Query: 182 QMAAYAANSNIDGMEKILQSMEVNPKIIMDWNSYAIAANGYIKIGCIDKALQTLKNSEKL 361
           +M AYAA S+I  MEK+L  ME +P +  DW+ Y    NGY K G  + ++  LK +E+L
Sbjct: 213 RMNAYAAASDITNMEKLLSKMEADPLVATDWHIYFTVGNGYFKAGLSENSISMLKKAEQL 272

Query: 362 ITGKQRRVAYDFLLTMYAGARSKEDLYRIWKLYKSSEKLNNTSFLCMIGSLLKLDDIDGA 541
           I  KQ+ +AY +L+T+YA   +K+++YR+W LY + +K  N+ +LC+I SL+KLDDIDGA
Sbjct: 273 IGDKQKWLAYQYLMTLYAAIGNKDEVYRVWNLYTNLQKRFNSGYLCIISSLMKLDDIDGA 332

Query: 542 EKILEEWGSGHTSYDFRVPNLLIAAYCKNGLVEKAEMLLNKTVEKGKKPLSSTWGYLATG 721
           E+IL+EW SG TS+DF++PN++I +YC  G V+KAE  +++ +E GK+P +  W  LA+G
Sbjct: 333 ERILKEWESGDTSFDFKIPNMMINSYCTKGFVDKAEAYISRLIENGKEPRAYAWDRLASG 392

Query: 722 YVAANEFPKALKAMESALLARRPKWMLNRDTLSA 823
           Y +     KA + ++ A+    P+W  N D L+A
Sbjct: 393 YHSNGLTNKAAETLKKAISVSPPRWKPNYDILAA 426