BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022282
         (682 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat...   166   9e-44
ref|XP_002512535.1| pentatricopeptide repeat-containing protein,...   163   3e-41
emb|CBI39620.3| unnamed protein product [Vitis vinifera]              166   3e-39
ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat...   146   4e-38
ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat...   146   4e-38

>ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  166 bits (421), Expect(2) = 9e-44
 Identities = 73/134 (54%), Positives = 103/134 (76%)
 Frame = -2

Query: 543 TTGGRNTQAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNM 364
           T+   +T AW +FC++  E++  NAFT+SSVLKAC+GM  +  G +VHGLA+K+G+DG +
Sbjct: 85  TSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFI 144

Query: 363 YVQNALMDMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQ 184
           YV NALMDMYATC  +M +AC VF  I +KN++SWTT+IA YTH+ DGY  L+VF++M+ 
Sbjct: 145 YVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLL 204

Query: 183 EEAELNSYTYSITI 142
           EE ELN +++SI +
Sbjct: 205 EEVELNPFSFSIAV 218



 Score = 36.6 bits (83), Expect(2) = 9e-44
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = -3

Query: 602 LFDKIPERDVVAWTSMISG 546
           LFD++PERDVVAWT MI+G
Sbjct: 65  LFDEMPERDVVAWTVMIAG 83



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
 Frame = -2

Query: 549 WNTT-----GGRNTQAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVK 385
           WNT          T++  +F  ++ E    N FT +S++ AC  +  + CG  +HG  ++
Sbjct: 280 WNTLIAGYERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIR 339

Query: 384 NGVDGNMYVQNALMDMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALK 205
            G+DGN+ + NAL+DMY+ C   ++++  VF  +  ++ +SWT M+  Y   G G  A++
Sbjct: 340 RGLDGNLALSNALIDMYSKC-GNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVE 398

Query: 204 VFKRMVQ 184
           +F +MV+
Sbjct: 399 LFDKMVR 405



 Score = 69.7 bits (169), Expect = 5e-10
 Identities = 38/120 (31%), Positives = 65/120 (54%)
 Frame = -2

Query: 510 MFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNMYVQNALMDMYA 331
           +F  +  E+V+LN F+ S  ++AC  +G    G  +H    K+G + N+ V N+++DMY 
Sbjct: 198 VFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYC 257

Query: 330 TCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQEEAELNSYTYS 151
            CS   SEA   F  +  ++ ++W T+IA Y  + +   +L VF  M  E    N +T++
Sbjct: 258 RCS-CFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFT 315


>ref|XP_002512535.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548496|gb|EEF49987.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 387

 Score =  163 bits (412), Expect(2) = 3e-41
 Identities = 71/126 (56%), Positives = 99/126 (78%)
 Frame = -2

Query: 519 AWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNMYVQNALMD 340
           AW+MFCD+   ++  NAFT+SSVLKAC+GM  + CG++VHG A+K+G++G+++V NALMD
Sbjct: 44  AWSMFCDMVASEMNPNAFTISSVLKACKGMKSLSCGTLVHGFAIKHGIEGSIFVDNALMD 103

Query: 339 MYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQEEAELNSY 160
            YATC  +M EAC VF  I VKN +SWTT+IA YTHKGDG+  L++F++M+ EE E N Y
Sbjct: 104 AYATCCVSMREACLVFCGIEVKNAVSWTTLIAGYTHKGDGHLGLQIFRQMLLEEEECNPY 163

Query: 159 TYSITI 142
           ++SI +
Sbjct: 164 SFSIAV 169



 Score = 31.6 bits (70), Expect(2) = 3e-41
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = -3

Query: 602 LFDKIPERDVVAWTSMISG 546
           +FD++ ERDVVAWT MI+G
Sbjct: 16  VFDEMLERDVVAWTVMIAG 34



 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 41/142 (28%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
 Frame = -2

Query: 549 WNTT-----GGRNTQAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVK 385
           WNT         + +A  +F ++K      +  T +SV  AC  + V+ CG  VHG  ++
Sbjct: 231 WNTIIAGYERSDSIEALFIFSEMKLNGFDPDCNTFTSVTAACANLAVLSCGQQVHGGIIQ 290

Query: 384 NGVDGNMYVQNALMDMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALK 205
            G+D ++ + NAL+DMYA C   ++++  +F  +  KN +SWT+M+  Y   G G   ++
Sbjct: 291 KGLDKDLILANALIDMYAKC-GIITDSRKIFSELSCKNLVSWTSMMIGYGAHGFGREVVE 349

Query: 204 VFKRMVQEEAELNSYTYSITIS 139
           +F  MV+   + +   +   +S
Sbjct: 350 LFDEMVESGIKPDHIAFMAVLS 371



 Score = 58.2 bits (139), Expect(2) = 1e-07
 Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
 Frame = -2

Query: 510 MFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNMYVQNALMDMYA 331
           +F  +  E+ + N ++ S  ++AC  +G    G  +H   +K+G + ++ V N+++DMY 
Sbjct: 149 IFRQMLLEEEECNPYSFSIAVRACASIGSHNFGKQIHAAVIKHGCEFSLPVMNSILDMYC 208

Query: 330 TCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQE--EAELNSYT 157
            C   + EA   F  +  ++ ++W T+IA Y  + D   AL +F  M     + + N++T
Sbjct: 209 RC-GRLPEANQYFHEMTRRDLITWNTIIAGY-ERSDSIEALFIFSEMKLNGFDPDCNTFT 266

Query: 156 YSITISNA 133
            S+T + A
Sbjct: 267 -SVTAACA 273



 Score = 23.9 bits (50), Expect(2) = 1e-07
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 611 AC*LFDKIPERDVVAWTSMISG 546
           AC +F  I  ++ V+WT++I+G
Sbjct: 115 ACLVFCGIEVKNAVSWTTLIAG 136


>emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  166 bits (421), Expect = 3e-39
 Identities = 73/134 (54%), Positives = 103/134 (76%)
 Frame = -2

Query: 543 TTGGRNTQAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNM 364
           T+   +T AW +FC++  E++  NAFT+SSVLKAC+GM  +  G +VHGLA+K+G+DG +
Sbjct: 69  TSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFI 128

Query: 363 YVQNALMDMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQ 184
           YV NALMDMYATC  +M +AC VF  I +KN++SWTT+IA YTH+ DGY  L+VF++M+ 
Sbjct: 129 YVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLL 188

Query: 183 EEAELNSYTYSITI 142
           EE ELN +++SI +
Sbjct: 189 EEVELNPFSFSIAV 202



 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
 Frame = -2

Query: 549 WNTT-----GGRNTQAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVK 385
           WNT          T++  +F  ++ E    N FT +S++ AC  +  + CG  +HG  ++
Sbjct: 264 WNTLIAGYERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIR 323

Query: 384 NGVDGNMYVQNALMDMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALK 205
            G+DGN+ + NAL+DMY+ C   ++++  VF  +  ++ +SWT M+  Y   G G  A++
Sbjct: 324 RGLDGNLALSNALIDMYSKC-GNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVE 382

Query: 204 VFKRMVQ 184
           +F +MV+
Sbjct: 383 LFDKMVR 389



 Score = 69.7 bits (169), Expect = 5e-10
 Identities = 38/120 (31%), Positives = 65/120 (54%)
 Frame = -2

Query: 510 MFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNMYVQNALMDMYA 331
           +F  +  E+V+LN F+ S  ++AC  +G    G  +H    K+G + N+ V N+++DMY 
Sbjct: 182 VFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYC 241

Query: 330 TCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQEEAELNSYTYS 151
            CS   SEA   F  +  ++ ++W T+IA Y  + +   +L VF  M  E    N +T++
Sbjct: 242 RCS-CFSEANRYFYEMNQRDLITWNTLIAGY-ERSNPTESLYVFSMMESEGFSPNCFTFT 299


>ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  146 bits (369), Expect(2) = 4e-38
 Identities = 66/125 (52%), Positives = 95/125 (76%)
 Frame = -2

Query: 522 QAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNMYVQNALM 343
           QAWTMF ++ + +VQ NAFT+SSVLKAC+GM  + CG++ H LA K+G+D ++YVQNAL+
Sbjct: 92  QAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALL 151

Query: 342 DMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQEEAELNS 163
           DMYA   A M +A +VF  I +K  +SWTT+IA +TH+GDGY+ L  F++M+ E+   NS
Sbjct: 152 DMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNS 211

Query: 162 YTYSI 148
           +++SI
Sbjct: 212 FSFSI 216



 Score = 37.7 bits (86), Expect(2) = 4e-38
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -3

Query: 611 AC*LFDKIPERDVVAWTSMISG 546
           AC LF++IPERDVV WT+MI G
Sbjct: 62  ACNLFNEIPERDVVTWTAMIVG 83



 Score = 79.7 bits (195), Expect = 5e-13
 Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
 Frame = -2

Query: 549 WNTT-----GGRNTQAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVK 385
           WNT         ++++ ++F  +  E  + N FT +S+  AC  + V+ CG  VHG  V+
Sbjct: 280 WNTLIAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVR 339

Query: 384 NGVDGNMYVQNALMDMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALK 205
            G D N+ + N+L+DMYA C  ++S++  +F  +  ++ +SWTTM+  Y   G G  A+K
Sbjct: 340 RGFDKNVALINSLIDMYAKC-GSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVK 398

Query: 204 VFKRMVQ 184
           +F  MVQ
Sbjct: 399 LFDEMVQ 405



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
 Frame = -2

Query: 489 EDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNMYVQNALMDMYATCSAAMS 310
           EDV  N+F+ S   +AC  +    CG  +H    K G+  +  V N+++DMY  C+  + 
Sbjct: 205 EDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCN-YLC 263

Query: 309 EACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQEEAELNSYTY-SITISNA 133
           +A   F  +  KN ++W T+IA Y  + D   +L +F +M  E  + N +T+ SIT + A
Sbjct: 264 DAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACA 322


>ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  146 bits (369), Expect(2) = 4e-38
 Identities = 66/125 (52%), Positives = 95/125 (76%)
 Frame = -2

Query: 522 QAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNMYVQNALM 343
           QAWTMF ++ + +VQ NAFT+SSVLKAC+GM  + CG++ H LA K+G+D ++YVQNAL+
Sbjct: 92  QAWTMFSEMLRSEVQPNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALL 151

Query: 342 DMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQEEAELNS 163
           DMYA   A M +A +VF  I +K  +SWTT+IA +TH+GDGY+ L  F++M+ E+   NS
Sbjct: 152 DMYAASCATMDDALSVFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNS 211

Query: 162 YTYSI 148
           +++SI
Sbjct: 212 FSFSI 216



 Score = 37.7 bits (86), Expect(2) = 4e-38
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -3

Query: 611 AC*LFDKIPERDVVAWTSMISG 546
           AC LF++IPERDVV WT+MI G
Sbjct: 62  ACNLFNEIPERDVVTWTAMIVG 83



 Score = 79.7 bits (195), Expect = 5e-13
 Identities = 44/127 (34%), Positives = 73/127 (57%), Gaps = 5/127 (3%)
 Frame = -2

Query: 549 WNTT-----GGRNTQAWTMFCDVKKEDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVK 385
           WNT         ++++ ++F  +  E  + N FT +S+  AC  + V+ CG  VHG  V+
Sbjct: 280 WNTLIAGYERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVR 339

Query: 384 NGVDGNMYVQNALMDMYATCSAAMSEACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALK 205
            G D N+ + N+L+DMYA C  ++S++  +F  +  ++ +SWTTM+  Y   G G  A+K
Sbjct: 340 RGFDKNVALINSLIDMYAKC-GSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVK 398

Query: 204 VFKRMVQ 184
           +F  MVQ
Sbjct: 399 LFDEMVQ 405



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
 Frame = -2

Query: 489 EDVQLNAFTVSSVLKACRGMGVVLCGSMVHGLAVKNGVDGNMYVQNALMDMYATCSAAMS 310
           EDV  N+F+ S   +AC  +    CG  +H    K G+  +  V N+++DMY  C+  + 
Sbjct: 205 EDVGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCN-YLC 263

Query: 309 EACTVFEMIRVKNDMSWTTMIASYTHKGDGYAALKVFKRMVQEEAELNSYTY-SITISNA 133
           +A   F  +  KN ++W T+IA Y  + D   +L +F +M  E  + N +T+ SIT + A
Sbjct: 264 DAKRCFGELTEKNLITWNTLIAGY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACA 322