BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022239
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP46207.1| putative retrotransposon protein [Oryza sativa Ja...   152   2e-35
gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]    152   2e-35
gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]     152   4e-35
gb|ABA94321.1| retrotransposon protein, putative, unclassified [...   152   4e-35
emb|CAE03644.2| OSJNBa0060N03.9 [Oryza sativa Japonica Group]         152   4e-35

>gb|AAP46207.1| putative retrotransposon protein [Oryza sativa Japonica Group]
          Length = 1176

 Score =  152 bits (385), Expect = 2e-35
 Identities = 74/135 (54%), Positives = 91/135 (67%)
 Frame = -3

Query: 411 GVLQQLTCPCSQEQNGVAERKNRHLMNVVRSLNRGMNVPKRFWSMAVITATFLINRTPSR 232
           G+L Q +CP +  QNGVAERKNRHL+ + RSL   MNVPK  WS AV+TA +LINRTPSR
Sbjct: 471 GILHQTSCPDTPPQNGVAERKNRHLLEIARSLMYTMNVPKFLWSEAVMTAAYLINRTPSR 530

Query: 231 ILGGHVPLHLVKPGYPLFSLAPRVFGCMCFVQDRCPQRAKLDDKFIKCLFLGYSSQSKGY 52
           ILG   P  ++  G   F + PRVFGC CFV+D  P   KLD + +KC+F+GYSS  KGY
Sbjct: 531 ILGMKTPYEMIF-GKNEFVVPPRVFGCTCFVRDHRPSIGKLDPRAVKCIFIGYSSSQKGY 589

Query: 51  RCYDPMSHRVIHSRD 7
           +C+ P   R   S D
Sbjct: 590 KCWSPSERRTFVSMD 604


>gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]
          Length = 1472

 Score =  152 bits (385), Expect = 2e-35
 Identities = 74/135 (54%), Positives = 91/135 (67%)
 Frame = -3

Query: 411  GVLQQLTCPCSQEQNGVAERKNRHLMNVVRSLNRGMNVPKRFWSMAVITATFLINRTPSR 232
            G+L Q +CP +  QNGVAERKNRHL+ + RSL   MNVPK  WS AV+TA +LINRTPSR
Sbjct: 644  GILHQTSCPDTPPQNGVAERKNRHLLEIARSLMYTMNVPKFLWSEAVMTAAYLINRTPSR 703

Query: 231  ILGGHVPLHLVKPGYPLFSLAPRVFGCMCFVQDRCPQRAKLDDKFIKCLFLGYSSQSKGY 52
            ILG   P  ++  G   F + PRVFGC CFV+D  P   KLD + +KC+F+GYSS  KGY
Sbjct: 704  ILGMKTPYEMIF-GKNEFVVPPRVFGCTCFVRDHRPSIGKLDPRAVKCIFIGYSSSQKGY 762

Query: 51   RCYDPMSHRVIHSRD 7
            +C+ P   R   S D
Sbjct: 763  KCWSPSERRTFVSMD 777


>gb|AAO20078.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1299

 Score =  152 bits (383), Expect = 4e-35
 Identities = 74/135 (54%), Positives = 91/135 (67%)
 Frame = -3

Query: 411 GVLQQLTCPCSQEQNGVAERKNRHLMNVVRSLNRGMNVPKRFWSMAVITATFLINRTPSR 232
           G+L Q +CP +  QNGVAERKNRHL+   RSL   MNVPK  WS AV+TAT+LINRTPSR
Sbjct: 470 GILHQTSCPDTPPQNGVAERKNRHLLETARSLMYAMNVPKFLWSEAVMTATYLINRTPSR 529

Query: 231 ILGGHVPLHLVKPGYPLFSLAPRVFGCMCFVQDRCPQRAKLDDKFIKCLFLGYSSQSKGY 52
           ILG   P  ++  G   F + P+VFGC CFV+D  P   KLD + +KC+F+GYSS  KGY
Sbjct: 530 ILGMKTPCEMIF-GKNEFVVPPKVFGCTCFVRDHRPSIGKLDPRAVKCIFVGYSSGQKGY 588

Query: 51  RCYDPMSHRVIHSRD 7
           +C+ P   R   S D
Sbjct: 589 KCWSPSERRTFVSMD 603


>gb|ABA94321.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1133

 Score =  152 bits (383), Expect = 4e-35
 Identities = 74/135 (54%), Positives = 93/135 (68%)
 Frame = -3

Query: 411 GVLQQLTCPCSQEQNGVAERKNRHLMNVVRSLNRGMNVPKRFWSMAVITATFLINRTPSR 232
           G++ Q TCP +  QNGVAERKNRHL+ V RSL   MNVPK  WS AV+TA +LINR PSR
Sbjct: 384 GIIHQTTCPGTPPQNGVAERKNRHLLEVARSLMFQMNVPKYLWSEAVMTAAYLINRMPSR 443

Query: 231 ILGGHVPLHLVKPGYPLFSLAPRVFGCMCFVQDRCPQRAKLDDKFIKCLFLGYSSQSKGY 52
           ILG   P  L+  G   F + P+VFGC+CFV+D  P   KLD   +KC+F+GY+S  KGY
Sbjct: 444 ILGMKSPAELLL-GKREFKVPPKVFGCVCFVRDHRPSVGKLDPHAVKCVFVGYASSQKGY 502

Query: 51  RCYDPMSHRVIHSRD 7
           +C+DP+  R+  S D
Sbjct: 503 KCWDPIERRLFVSMD 517


>emb|CAE03644.2| OSJNBa0060N03.9 [Oryza sativa Japonica Group]
          Length = 1045

 Score =  152 bits (383), Expect = 4e-35
 Identities = 74/135 (54%), Positives = 93/135 (68%)
 Frame = -3

Query: 411 GVLQQLTCPCSQEQNGVAERKNRHLMNVVRSLNRGMNVPKRFWSMAVITATFLINRTPSR 232
           G++ Q TCP +  QNGVAERKNRHL+ V RSL   MNVPK  WS AV+TA +LINR PSR
Sbjct: 553 GIIHQTTCPGTPPQNGVAERKNRHLLEVARSLMFQMNVPKYLWSEAVMTAAYLINRMPSR 612

Query: 231 ILGGHVPLHLVKPGYPLFSLAPRVFGCMCFVQDRCPQRAKLDDKFIKCLFLGYSSQSKGY 52
           ILG   P  L+  G   F + P+VFGC+CFV+D  P   KLD   +KC+F+GY+S  KGY
Sbjct: 613 ILGMKSPAELLL-GKREFKVPPKVFGCVCFVRDHRPSVGKLDPHAVKCVFVGYASSQKGY 671

Query: 51  RCYDPMSHRVIHSRD 7
           +C+DP+  R+  S D
Sbjct: 672 KCWDPIERRLFVSMD 686