BLASTX nr result
ID: Coptis25_contig00022233
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00022233
(602 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN68564.1| hypothetical protein VITISV_032171 [Vitis vinifera] 135 1e-60
ref|XP_002281709.1| PREDICTED: AP2/ERF and B3 domain-containing ... 135 1e-60
gb|ACT33043.1| RAV transcription factor [Camellia sinensis] 120 2e-54
gb|ACF74549.1| RAV [Nicotiana tabacum] 119 2e-52
ref|XP_002524409.1| DNA-binding protein RAV1, putative [Ricinus ... 119 3e-52
>emb|CAN68564.1| hypothetical protein VITISV_032171 [Vitis vinifera]
Length = 364
Score = 135 bits (340), Expect(2) = 1e-60
Identities = 70/112 (62%), Positives = 85/112 (75%), Gaps = 2/112 (1%)
Frame = +2
Query: 272 SYWNSSQSYVLTKGWSRFVKEKKLQAGDVVSFLQSSGEDKQLYIDWKSRASSGPIELHNQ 451
SYWNSSQSYVLTKGWSRFVKEK L+AGD+VSF +S+G DKQLYIDWK+R
Sbjct: 245 SYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGGDKQLYIDWKARNG--------- 295
Query: 452 IYPVNSVNLVQPAVQVVRLFGVNIFKIPVSS--VVVDYGSWNGKRMRDVDFL 601
P N +N V+P V++VRLFGVNIFK+PV+S VV + GSW GKRM +++ L
Sbjct: 296 --PTNQINPVEP-VEMVRLFGVNIFKVPVNSSVVVANNGSWTGKRMIEMELL 344
Score = 123 bits (309), Expect(2) = 1e-60
Identities = 58/72 (80%), Positives = 61/72 (84%)
Frame = +1
Query: 1 GVDMPSFGTKSLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQIGTTCKGMLLNFEDKGGK 180
G D + + LFEK VTPSDVGKLNRLVIPKQHAEKHFPLQ GTT KG+LLNFED GGK
Sbjct: 179 GSDRVTKSREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQTGTTSKGVLLNFEDMGGK 238
Query: 181 VWRFRYSYWNSS 216
VWRFRYSYWNSS
Sbjct: 239 VWRFRYSYWNSS 250
>ref|XP_002281709.1| PREDICTED: AP2/ERF and B3 domain-containing transcription repressor
TEM1-like [Vitis vinifera]
Length = 358
Score = 135 bits (340), Expect(2) = 1e-60
Identities = 70/112 (62%), Positives = 85/112 (75%), Gaps = 2/112 (1%)
Frame = +2
Query: 272 SYWNSSQSYVLTKGWSRFVKEKKLQAGDVVSFLQSSGEDKQLYIDWKSRASSGPIELHNQ 451
SYWNSSQSYVLTKGWSRFVKEK L+AGD+VSF +S+G DKQLYIDWK+R
Sbjct: 245 SYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGGDKQLYIDWKARNG--------- 295
Query: 452 IYPVNSVNLVQPAVQVVRLFGVNIFKIPVSS--VVVDYGSWNGKRMRDVDFL 601
P N +N V+P V++VRLFGVNIFK+PV+S VV + GSW GKRM +++ L
Sbjct: 296 --PTNQINPVEP-VEMVRLFGVNIFKVPVNSSVVVANNGSWTGKRMIEMELL 344
Score = 123 bits (309), Expect(2) = 1e-60
Identities = 58/72 (80%), Positives = 61/72 (84%)
Frame = +1
Query: 1 GVDMPSFGTKSLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQIGTTCKGMLLNFEDKGGK 180
G D + + LFEK VTPSDVGKLNRLVIPKQHAEKHFPLQ GTT KG+LLNFED GGK
Sbjct: 179 GSDRVTKSREQLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLQTGTTSKGVLLNFEDMGGK 238
Query: 181 VWRFRYSYWNSS 216
VWRFRYSYWNSS
Sbjct: 239 VWRFRYSYWNSS 250
>gb|ACT33043.1| RAV transcription factor [Camellia sinensis]
Length = 362
Score = 120 bits (302), Expect(2) = 2e-54
Identities = 64/110 (58%), Positives = 78/110 (70%)
Frame = +2
Query: 272 SYWNSSQSYVLTKGWSRFVKEKKLQAGDVVSFLQSSGEDKQLYIDWKSRASSGPIELHNQ 451
SYWNSSQSYVLTKGWSRFVKEK L+AGD+VSF +S+G D QL+IDWK R S P+
Sbjct: 256 SYWNSSQSYVLTKGWSRFVKEKSLKAGDIVSFYRSTGSDNQLFIDWKPRNGSNPV----- 310
Query: 452 IYPVNSVNLVQPAVQVVRLFGVNIFKIPVSSVVVDYGSWNGKRMRDVDFL 601
VQP VQ+VRLFGVNIFK+P+S + + GKRMR+++ L
Sbjct: 311 ---------VQP-VQMVRLFGVNIFKVPISGGL--DSNCGGKRMREMELL 348
Score = 117 bits (294), Expect(2) = 2e-54
Identities = 55/64 (85%), Positives = 58/64 (90%)
Frame = +1
Query: 25 TKSLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQIGTTCKGMLLNFEDKGGKVWRFRYSY 204
T+ LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ TT KG+LLNF+D GKVWRFRYSY
Sbjct: 198 TEQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSETTSKGVLLNFKDVAGKVWRFRYSY 257
Query: 205 WNSS 216
WNSS
Sbjct: 258 WNSS 261
>gb|ACF74549.1| RAV [Nicotiana tabacum]
Length = 385
Score = 119 bits (299), Expect(2) = 2e-52
Identities = 57/71 (80%), Positives = 60/71 (84%)
Frame = +1
Query: 4 VDMPSFGTKSLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQIGTTCKGMLLNFEDKGGKV 183
VD + + LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ G T KG+LLNFED GKV
Sbjct: 187 VDKVNKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQNGNTSKGVLLNFEDLNGKV 246
Query: 184 WRFRYSYWNSS 216
WRFRYSYWNSS
Sbjct: 247 WRFRYSYWNSS 257
Score = 112 bits (279), Expect(2) = 2e-52
Identities = 60/101 (59%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
Frame = +2
Query: 272 SYWNSSQSYVLTKGWSRFVKEKKLQAGDVVSFLQSSGEDKQLYIDWKSRASSGPIELHNQ 451
SYWNSSQSYVLTKGWSRFVKEK L+AGD+VSF +S+GEDKQLYID+K+R ++ I
Sbjct: 252 SYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGEDKQLYIDFKARNATPTI----S 307
Query: 452 IYPVNSVNLVQPAVQVVRLFGVNIFKIP-VSSVVVDYGSWN 571
+ V + P VQ+VRLFGVNI K+P V++VV++ + N
Sbjct: 308 PTVASQVQVQVPQVQMVRLFGVNICKVPAVNNVVINNNNNN 348
>ref|XP_002524409.1| DNA-binding protein RAV1, putative [Ricinus communis]
gi|223536370|gb|EEF38020.1| DNA-binding protein RAV1,
putative [Ricinus communis]
Length = 371
Score = 119 bits (298), Expect(2) = 3e-52
Identities = 67/110 (60%), Positives = 81/110 (73%)
Frame = +2
Query: 272 SYWNSSQSYVLTKGWSRFVKEKKLQAGDVVSFLQSSGEDKQLYIDWKSRASSGPIELHNQ 451
SYWNSSQSYVLTKGWSRFVKEK L+AGD+V FL+S+G DKQLYIDWK R + +
Sbjct: 259 SYWNSSQSYVLTKGWSRFVKEKNLKAGDIVRFLKSTGPDKQLYIDWKVRTLTPTVS---- 314
Query: 452 IYPVNSVNLVQPAVQVVRLFGVNIFKIPVSSVVVDYGSWNGKRMRDVDFL 601
PV V VQP VQ+VRLFGVNIFK+P +S + NGKR+R+++ L
Sbjct: 315 -NPV--VCSVQP-VQMVRLFGVNIFKVPGNSHI---EGCNGKRIREMELL 357
Score = 111 bits (278), Expect(2) = 3e-52
Identities = 54/64 (84%), Positives = 58/64 (90%), Gaps = 1/64 (1%)
Frame = +1
Query: 28 KSLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQIGT-TCKGMLLNFEDKGGKVWRFRYSY 204
+ LFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQ G+ + KG+LLNFED GKVWRFRYSY
Sbjct: 201 EQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGSNSTKGVLLNFEDITGKVWRFRYSY 260
Query: 205 WNSS 216
WNSS
Sbjct: 261 WNSS 264