BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022204
         (819 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309447.1| predicted protein [Populus trichocarpa] gi|1...   167   3e-39
ref|XP_002516178.1| RING-H2 finger protein ATL3J, putative [Rici...   155   1e-35
ref|XP_002874020.1| zinc finger family protein [Arabidopsis lyra...   151   2e-34
ref|NP_568404.1| RING/U-box domain-containing protein [Arabidops...   147   2e-33
ref|XP_002324208.1| predicted protein [Populus trichocarpa] gi|2...   144   2e-32

>ref|XP_002309447.1| predicted protein [Populus trichocarpa] gi|118483893|gb|ABK93837.1|
           unknown [Populus trichocarpa]
           gi|222855423|gb|EEE92970.1| predicted protein [Populus
           trichocarpa]
          Length = 168

 Score =  167 bits (422), Expect = 3e-39
 Identities = 87/174 (50%), Positives = 104/174 (59%), Gaps = 5/174 (2%)
 Frame = -3

Query: 688 MGFSVEYSGLVLTHFLYNATLILSLLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 509
           MGF VE SGL++TH LY A L+L++LR    W  R                      SS 
Sbjct: 1   MGFFVEESGLIVTHLLYKAALVLAVLRWALAWALRFKNRTHLASPSNDSLRRSHPVPSS- 59

Query: 508 LTAQMIRETLDVVTYGDIMHNLPGTCDTCAVCLNELKKNDRVRELRNCCHVFHIKCIDRW 329
              Q IR+ L + T+GD+   +PG CDTCAVCL++L+  D VRELRNCCHVFH  CIDRW
Sbjct: 60  ---QQIRDGLILTTFGDVTERMPGVCDTCAVCLSQLRDQDEVRELRNCCHVFHRDCIDRW 116

Query: 328 LDHG-----DQKNCPLCRAPLLVTSCGSGLDGGWARSEPSWAVERLLYLFGDDL 182
           +DH      +   CPLCRAPLL TS          R+EPSWAVER+LYLFGDDL
Sbjct: 117 VDHDHEHDENHNTCPLCRAPLLTTSQSLAR----TRAEPSWAVERILYLFGDDL 166


>ref|XP_002516178.1| RING-H2 finger protein ATL3J, putative [Ricinus communis]
           gi|223544664|gb|EEF46180.1| RING-H2 finger protein
           ATL3J, putative [Ricinus communis]
          Length = 177

 Score =  155 bits (391), Expect = 1e-35
 Identities = 85/177 (48%), Positives = 107/177 (60%), Gaps = 8/177 (4%)
 Frame = -3

Query: 688 MGFSVEYSGLVLTHFLYNATLILSLLRCVFCWVTR--SMGFXXXXXXXXXXSTVPQVGLS 515
           MGF VE S +++TH LY A +IL++ R    W  R  S  +           ++ Q   S
Sbjct: 1   MGFFVEDSDVIVTHLLYKAAVILAVARWALSWALRFRSRTYLSPSSSSSSNDSLHQ---S 57

Query: 514 SGL-TAQMIRETLDVVTYGDIMHNLPGTCDTCAVCLNELKKNDRVRELRNCCHVFHIKCI 338
             L ++Q IR+ L + T+GDI   + G CDTCAVCL +L + D VRELRNCCHVFH +CI
Sbjct: 58  CALPSSQQIRDGLILTTFGDITDRISGACDTCAVCLGQLSELDEVRELRNCCHVFHKECI 117

Query: 337 DRWLDH-----GDQKNCPLCRAPLLVTSCGSGLDGGWARSEPSWAVERLLYLFGDDL 182
           DRW+DH      + K CPLCRAPLL  S          + EPSWAVER+LYLFGDDL
Sbjct: 118 DRWVDHDHDHDDNHKTCPLCRAPLLTASQSLAWINN-NKCEPSWAVERILYLFGDDL 173


>ref|XP_002874020.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297319857|gb|EFH50279.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 178

 Score =  151 bits (381), Expect = 2e-34
 Identities = 84/188 (44%), Positives = 110/188 (58%), Gaps = 18/188 (9%)
 Frame = -3

Query: 688 MGFSVEYSGLVLTHFLYNATLILSLLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 509
           M F +E+SGL++T  LY   +++++LR +  W+ R              S+     +S  
Sbjct: 1   MSFFIEHSGLIVTQLLYKMAVLITILRWILAWILRYRS------RSRSTSSSSSPSVSPS 54

Query: 508 LTAQMIRETLDVVTYGDIMHNLPGTC-DTCAVCLNELKKNDRVRELRNCCHVFHIKCIDR 332
           +++Q I+E+L V T+ D     P    DTCAVCL +L+  D VRELRNC H+FH +CIDR
Sbjct: 55  ISSQTIKESLSVTTFRDAAERSPAMINDTCAVCLGDLEDGDEVRELRNCSHMFHRECIDR 114

Query: 331 WLDH----GDQKN---------CPLCRAPLL---VTSCGSGLDGGW-ARSEPSWAVERLL 203
           WLD+    GD  N         CPLCR PLL    TSCG      W A++EPSWAVERLL
Sbjct: 115 WLDYECCGGDDNNEAEEDNHRTCPLCRTPLLAANTTSCGD-----WPAKNEPSWAVERLL 169

Query: 202 YLFGDDLH 179
           YLFGDDLH
Sbjct: 170 YLFGDDLH 177


>ref|NP_568404.1| RING/U-box domain-containing protein [Arabidopsis thaliana]
           gi|16209696|gb|AAL14405.1| AT5g20880/F22D1_50
           [Arabidopsis thaliana] gi|23463037|gb|AAN33188.1|
           At5g20880/F22D1_50 [Arabidopsis thaliana]
           gi|26451529|dbj|BAC42862.1| unknown protein [Arabidopsis
           thaliana] gi|332005517|gb|AED92900.1| RING/U-box
           domain-containing protein [Arabidopsis thaliana]
          Length = 176

 Score =  147 bits (372), Expect = 2e-33
 Identities = 83/188 (44%), Positives = 107/188 (56%), Gaps = 18/188 (9%)
 Frame = -3

Query: 688 MGFSVEYSGLVLTHFLYNATLILSLLRCVFCWVTRSMGFXXXXXXXXXXSTVPQVGLSSG 509
           M F +E SGL++T  LY   +++++LR +  W+ R              ST         
Sbjct: 1   MSFFIEDSGLIVTQLLYKMAVLITVLRWILAWILRYRS--------RSRSTSSSTSACPS 52

Query: 508 LTAQMIRETLDVVTYGDIMHNLPGTC-DTCAVCLNELKKNDRVRELRNCCHVFHIKCIDR 332
           +++Q I+E+L V T+ D     P    DTCAVCL +L+  D VRELRNC H+FH +CIDR
Sbjct: 53  ISSQAIKESLSVTTFRDAAERSPAMINDTCAVCLGDLEDGDEVRELRNCSHMFHRECIDR 112

Query: 331 WLDH----GDQKN---------CPLCRAPLL---VTSCGSGLDGGW-ARSEPSWAVERLL 203
           WLD+    GD+ N         CPLCR PLL    TSCG      W  ++EPSWAVERLL
Sbjct: 113 WLDYECCGGDENNEGEEDNHRTCPLCRTPLLAANTTSCGD-----WPTKNEPSWAVERLL 167

Query: 202 YLFGDDLH 179
           YLFGDDLH
Sbjct: 168 YLFGDDLH 175


>ref|XP_002324208.1| predicted protein [Populus trichocarpa] gi|222865642|gb|EEF02773.1|
           predicted protein [Populus trichocarpa]
          Length = 174

 Score =  144 bits (364), Expect = 2e-32
 Identities = 78/184 (42%), Positives = 99/184 (53%), Gaps = 15/184 (8%)
 Frame = -3

Query: 688 MGFSVEYSGLVLTHFLYNATLILSLLRCVFCWVTRSMG----FXXXXXXXXXXSTVPQVG 521
           MGF  E SGL++ H +Y A L L++L   + W  R                    VP   
Sbjct: 1   MGFFAEESGLIVAHLIYKAALALAVLIWAWDWALRFKNRAHLSSSSNDSLQQYHPVP--- 57

Query: 520 LSSGLTAQMIRETLDVVTYGDIMHNLPGTCDTCAVCLNELKKNDRVRELRNCCHVFHIKC 341
                +   + + L   T+ D++  +PG CDTCAVCL++L+  D VRELRNC HVFH +C
Sbjct: 58  -----SPHQVMDGLISTTFNDVIERVPGVCDTCAVCLSQLRDQDEVRELRNCGHVFHKEC 112

Query: 340 IDRWLDHG-----------DQKNCPLCRAPLLVTSCGSGLDGGWARSEPSWAVERLLYLF 194
           IDRW+DH            +   CPLCRAPL  TS        W R+EPSWAVER+LYLF
Sbjct: 113 IDRWVDHDHDHDHDHDHDENHNTCPLCRAPLPTTSRSL----AWTRTEPSWAVERILYLF 168

Query: 193 GDDL 182
           GDDL
Sbjct: 169 GDDL 172