BLASTX nr result

ID: Coptis25_contig00022198 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022198
         (259 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274489.2| PREDICTED: LOW QUALITY PROTEIN: midasin-like...    62   4e-08
ref|XP_003627212.1| Midasin [Medicago truncatula] gi|355521234|g...    58   7e-07
ref|XP_002327931.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>ref|XP_002274489.2| PREDICTED: LOW QUALITY PROTEIN: midasin-like [Vitis vinifera]
          Length = 5286

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +2

Query: 2   YTIPIMGCFRPMVRDIVDKTXXXXXXXXXXXXRSDNDLSKMDIXXXXXXXXXXXXXG--F 175
           YTIP+MGCFRP+ R IVDK              S+  L++++              G   
Sbjct: 57  YTIPMMGCFRPICRKIVDKAVALLRLVPNLRYNSNGTLTEVEEDKLLGEAGNFEDAGDAS 116

Query: 176 VMDAFVTSGRGLQLHEAACLAFSRALDL 259
           V++ F  +G GL LHE ACLAF RALDL
Sbjct: 117 VIEFFARNGWGLNLHELACLAFCRALDL 144


>ref|XP_003627212.1| Midasin [Medicago truncatula] gi|355521234|gb|AET01688.1| Midasin
           [Medicago truncatula]
          Length = 494

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 33/86 (38%), Positives = 42/86 (48%)
 Frame = +2

Query: 2   YTIPIMGCFRPMVRDIVDKTXXXXXXXXXXXXRSDNDLSKMDIXXXXXXXXXXXXXGFVM 181
           YTIP+MGCFR + R  VDK              + +D  ++D                V+
Sbjct: 57  YTIPLMGCFRAIARKFVDKAVALLRLVPNLRSNTVDDAMEIDADIVLDDVAN------VV 110

Query: 182 DAFVTSGRGLQLHEAACLAFSRALDL 259
           + +V  GRGL LHE  CLAF RALDL
Sbjct: 111 EYYVEQGRGLDLHEHVCLAFCRALDL 136


>ref|XP_002327931.1| predicted protein [Populus trichocarpa] gi|222837340|gb|EEE75719.1|
           predicted protein [Populus trichocarpa]
          Length = 5317

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/86 (38%), Positives = 45/86 (52%)
 Frame = +2

Query: 2   YTIPIMGCFRPMVRDIVDKTXXXXXXXXXXXXRSDNDLSKMDIXXXXXXXXXXXXXGFVM 181
           YTIP++G FRP+ R IVD+               D + + +D               +V+
Sbjct: 57  YTIPLIGSFRPVARKIVDQAVALLRNCNLSSDSDDIEGNFVDADVL-----------YVI 105

Query: 182 DAFVTSGRGLQLHEAACLAFSRALDL 259
           + +  SGRGL+LHE ACLAF RALDL
Sbjct: 106 EHYERSGRGLELHELACLAFCRALDL 131


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