BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022168
         (473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    57   1e-06

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
 Frame = +3

Query: 27  LGVTTNYLAETVAIVEAIEKALELGWKYIWVESDSTAVAQAFQENK-MY*RVRGIWQTLK 203
           +G  T + AE  A + AIEK++E   + IW+E+DS  V +AF  ++ +  ++R  W    
Sbjct: 47  IGHATCFKAELCAAIFAIEKSIEYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCL 106

Query: 204 TQATWINITTT--WRETNLGVDSCAKHGANLPQGERKWWDSRSSF 332
             A  I    T   RE N G DS AK+G +L     +WW S   F
Sbjct: 107 ALAQKIKCVCTHIHREGNAGADSLAKNGKSLALLTSQWWSSSPLF 151