BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022161
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_176496.1| pentatricopeptide repeat-containing protein [Ar...    82   5e-14
emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]         82   5e-14
gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protei...    81   8e-14
ref|NP_001185295.1| pentatricopeptide repeat-containing protein ...    81   8e-14
ref|NP_176481.2| pentatricopeptide repeat-containing protein [Ar...    81   8e-14

>ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
           gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein;
           41955-40111 [Arabidopsis thaliana]
           gi|332195930|gb|AEE34051.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 45/96 (46%), Positives = 54/96 (56%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           P+ VT TT            EAV L+E+ V  G   D VTYG VINGLCK    D AL L
Sbjct: 168 PDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNL 227

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVF 290
           L  ME  KI A+V +YS ++D LCK   V+D L +F
Sbjct: 228 LNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLF 263



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/97 (28%), Positives = 48/97 (49%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           PNVVT  +            EA +L ++ +      + VTY  +ING C    +D A ++
Sbjct: 308 PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQI 367

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFK 293
              M  K  + +V  Y+ +++G CK  +V DG+ +F+
Sbjct: 368 FTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFR 404


>emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 42/96 (43%), Positives = 57/96 (59%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           P+ VT  T            EAV L+++ V  G   D VTYG V+NGLCK  ++D AL L
Sbjct: 183 PDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSL 242

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVF 290
           L+ ME  KI A+V +Y+ I+DGLCK   ++D  A+F
Sbjct: 243 LKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALF 278



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 51/95 (53%)
 Frame = +3

Query: 6   NVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLL 185
           N VT  T             A ++ +K V +G   D +TY ++++GLCK   ++ AL + 
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488

Query: 186 RAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVF 290
             ++  K+  ++  Y+++++G+CK  +V DG  +F
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 523



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/97 (29%), Positives = 44/97 (45%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           PNVVT +             EA +L ++ +      D  TY  +ING C    +D A  +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFK 293
              M  K    NV  Y+ ++ G CK  RV +G+ +F+
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419


>gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/96 (43%), Positives = 54/96 (56%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           PN VT  T            EAV L+++ V  G   D  TYG V+NGLCK  ++D AL L
Sbjct: 167 PNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSL 226

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVF 290
           L+ ME  KI A+V +Y+ I+D LC    VND L +F
Sbjct: 227 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLF 262



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 51/95 (53%)
 Frame = +3

Query: 6   NVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLL 185
           N VT  T             A ++ +K V +G   D +TY ++++GLCK   ++ AL + 
Sbjct: 413 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 472

Query: 186 RAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVF 290
             ++  K+  ++  Y+++++G+CK  +V DG  +F
Sbjct: 473 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 507



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/97 (29%), Positives = 44/97 (45%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           PNVVT +             EA +L ++ +      D  TY  +ING C    +D A  +
Sbjct: 307 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 366

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFK 293
              M  K    NV  Y+ ++ G CK  RV +G+ +F+
Sbjct: 367 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 403


>ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
           gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB
           PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana] gi|332195900|gb|AEE34021.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 528

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 43/96 (44%), Positives = 54/96 (56%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           P+ VT TT            EAV L+++ V  G   D VTYG V+NGLCK  + D AL L
Sbjct: 181 PDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNL 240

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVF 290
           L  ME  KI ANV +YS ++D LCK    +D L +F
Sbjct: 241 LNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLF 276


>ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
           gi|332195902|gb|AEE34023.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/96 (43%), Positives = 54/96 (56%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           PN VT  T            EAV L+++ V  G   D  TYG V+NGLCK  ++D AL L
Sbjct: 183 PNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSL 242

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVF 290
           L+ ME  KI A+V +Y+ I+D LC    VND L +F
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLF 278



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 51/95 (53%)
 Frame = +3

Query: 6   NVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLL 185
           N VT  T             A ++ +K V +G   D +TY ++++GLCK   ++ AL + 
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488

Query: 186 RAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVF 290
             ++  K+  ++  Y+++++G+CK  +V DG  +F
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 523



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 29/97 (29%), Positives = 44/97 (45%)
 Frame = +3

Query: 3   PNVVTITTXXXXXXXXXXXXEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRL 182
           PNVVT +             EA +L ++ +      D  TY  +ING C    +D A  +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 183 LRAMEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFK 293
              M  K    NV  Y+ ++ G CK  RV +G+ +F+
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419