BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022157
         (1060 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...   219   8e-59
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   208   1e-57
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   215   3e-57
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   214   9e-57
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...   199   3e-56

>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
           gi|241926916|gb|EES00061.1| hypothetical protein
           SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score =  219 bits (559), Expect(2) = 8e-59
 Identities = 112/294 (38%), Positives = 176/294 (59%), Gaps = 1/294 (0%)
 Frame = -2

Query: 879 RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 700
           RLK +L  IIS  Q+AF+ GR I DN  +  EI H+         G  A+KLD++KA+DR
Sbjct: 105 RLKKILPNIISNSQSAFVPGRLITDNVLLAYEIVHHLKSIKKGAGGLAAIKLDMSKAYDR 164

Query: 699 LEWCFIDQVLERLGFSSRSRILINQCISTVSYNSFKWFPFEEN-FPFQRFEMGDPMSPYL 523
           +EW F++ ++ ++GF  +   LI +C++TV+Y       + +  FP +    GDP+SPYL
Sbjct: 165 VEWSFLENMMRKMGFDEKWVQLIMKCVTTVTYKIKVNDSYTQKIFPQRGLRQGDPLSPYL 224

Query: 522 FIIASEALSRLFLQEESLGNIHGIKVKRGAIPITHLLYADDLLIFCKATLEESKRMRQVI 343
           FII +E LS +  + E  G I GIK+ RGA  + HL +ADD LI  +A   ++  +R+++
Sbjct: 225 FIICAEGLSAMLQKAEQKGKIEGIKICRGAPKVNHLFFADDSLILMRARASDALELRRIL 284

Query: 342 VKYCETSGQAVNWEKSSAYFSSNVHHDHQRFLKQHWNVKDFNENEKYLGVPIVLTSKKSE 163
             Y + SGQ +N EKSS  FS N     +  ++ + ++ D    EKYLG+P+ +   + +
Sbjct: 285 DVYEKASGQVINKEKSSMMFSPNTGQHDRSLMRSNLSITDEASTEKYLGLPVNIGKSRKK 344

Query: 162 NFEFLIDKVQKNITG*KAKVLSQASRGVLVKTVAQSIPVYTMSTYHIPMKICDK 1
            FE++  K+   I G + K+LS+A + +L+K VAQSIP Y MS + +   +CD+
Sbjct: 345 PFEYIKKKIWSRIQGWQEKLLSKAGKEILIKAVAQSIPTYAMSCFDLTKGLCDE 398



 Score = 35.0 bits (79), Expect(2) = 8e-59
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 1015 GMLPLTLNETFITLIPKITNPEHMSKFRPISLSN 914
            G +P   N+T I LIPK   P+ +   RPISL N
Sbjct: 59   GPIPEGWNDTIIVLIPKTNTPQMLKDLRPISLCN 92


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  208 bits (529), Expect(2) = 1e-57
 Identities = 106/294 (36%), Positives = 176/294 (59%), Gaps = 1/294 (0%)
 Frame = -2

Query: 879  RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 700
            RLK  L  +IS  QAAF+ G+ I DN  + +E+ H+         G++AVK DI+KA+DR
Sbjct: 886  RLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDR 945

Query: 699  LEWCFIDQVLERLGFSSRSRILINQCISTVSYNSF-KWFPFEENFPFQRFEMGDPMSPYL 523
            +EW F+++V+ +LGF+ R    I  C+++VSY       P+ + FP +    GDP+SPYL
Sbjct: 946  VEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYL 1005

Query: 522  FIIASEALSRLFLQEESLGNIHGIKVKRGAIPITHLLYADDLLIFCKATLEESKRMRQVI 343
            F+  +E LS +  + E    IHG+K+ +  + I+HLL+ADD L FC+A+ +  +++  + 
Sbjct: 1006 FLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIF 1065

Query: 342  VKYCETSGQAVNWEKSSAYFSSNVHHDHQRFLKQHWNVKDFNENEKYLGVPIVLTSKKSE 163
             KY E SGQ +N+ KSS  F   +    ++ L +   + +     KYLG+P  L  +K E
Sbjct: 1066 KKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVE 1125

Query: 162  NFEFLIDKVQKNITG*KAKVLSQASRGVLVKTVAQSIPVYTMSTYHIPMKICDK 1
             FE+++ KV++   G     LS A + +++K +A ++PVY+M+ + +P  IC++
Sbjct: 1126 LFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNE 1179



 Score = 42.4 bits (98), Expect(2) = 1e-57
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = -1

Query: 1036 IHNFFIFGMLPLTLNETFITLIPKITNPEHMSKFRPISL 920
            + +FF   ++   +N+T I LIPKI +P+HMS +RPISL
Sbjct: 833  VRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISL 871


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  215 bits (548), Expect(2) = 3e-57
 Identities = 109/294 (37%), Positives = 181/294 (61%), Gaps = 1/294 (0%)
 Frame = -2

Query: 879  RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 700
            RLK +L  +ISP Q+AF+ GR I DN  + +E+ H          G+ A KLD++KA+DR
Sbjct: 780  RLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDR 839

Query: 699  LEWCFIDQVLERLGFSSRSRILINQCISTVSYNSFKWFPFEENF-PFQRFEMGDPMSPYL 523
            +EW F+  ++ +LGF +    LI +C+STV+Y         E+F P +    GDP+SPYL
Sbjct: 840  VEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPGRGLRQGDPLSPYL 899

Query: 522  FIIASEALSRLFLQEESLGNIHGIKVKRGAIPITHLLYADDLLIFCKATLEESKRMRQVI 343
            F++ +E  S L  + E  G +HGI++ +GA  ++HLL+ADD LI C+A   E+++++ ++
Sbjct: 900  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 959

Query: 342  VKYCETSGQAVNWEKSSAYFSSNVHHDHQRFLKQHWNVKDFNENEKYLGVPIVLTSKKSE 163
              Y E SGQ +N +KS+  FS N     +R +    N++    NE+YLG+P+ +   +++
Sbjct: 960  QIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTK 1019

Query: 162  NFEFLIDKVQKNITG*KAKVLSQASRGVLVKTVAQSIPVYTMSTYHIPMKICDK 1
             F +L +++ + I G K K+LS+A + +L+K VAQ+IP + M  + +   +CD+
Sbjct: 1020 IFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQ 1073



 Score = 33.9 bits (76), Expect(2) = 3e-57
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 1015 GMLPLTLNETFITLIPKITNPEHMSKFRPISLSN 914
            G +P   N+  I LIPK+  PE +   RPISL N
Sbjct: 734  GAIPEGWNDITIVLIPKVKKPELIKDLRPISLCN 767


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  214 bits (544), Expect(2) = 9e-57
 Identities = 109/294 (37%), Positives = 180/294 (61%), Gaps = 1/294 (0%)
 Frame = -2

Query: 879  RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 700
            RLK +L  +ISP Q+AF+ GR I DN  + +E+ H          G+ A KLD++KA+DR
Sbjct: 753  RLKKILPDVISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDR 812

Query: 699  LEWCFIDQVLERLGFSSRSRILINQCISTVSYNSFKWFPFEENF-PFQRFEMGDPMSPYL 523
            +EW F+  ++ +LGF +    LI +C+STV+Y         E+F P +    GDP+SPYL
Sbjct: 813  VEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYL 872

Query: 522  FIIASEALSRLFLQEESLGNIHGIKVKRGAIPITHLLYADDLLIFCKATLEESKRMRQVI 343
            F++ +E  S L  + E  G +HGI++ +GA  ++HLL+ADD LI C+A   E+++++ ++
Sbjct: 873  FLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTIL 932

Query: 342  VKYCETSGQAVNWEKSSAYFSSNVHHDHQRFLKQHWNVKDFNENEKYLGVPIVLTSKKSE 163
              Y E SGQ +N +KS+  FS N     +  +    N++    NEKYLG+P+ +   +++
Sbjct: 933  QIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTK 992

Query: 162  NFEFLIDKVQKNITG*KAKVLSQASRGVLVKTVAQSIPVYTMSTYHIPMKICDK 1
             F +L +++ + I G K K+LS+A + +L+K VAQ+IP + M  + +   +CD+
Sbjct: 993  IFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKDLCDQ 1046



 Score = 33.9 bits (76), Expect(2) = 9e-57
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 1015 GMLPLTLNETFITLIPKITNPEHMSKFRPISLSN 914
            G +P   N+  I LIPK+  PE +   RPISL N
Sbjct: 707  GAIPEGWNDITIVLIPKVKKPELIKDLRPISLCN 740


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score =  199 bits (506), Expect(2) = 3e-56
 Identities = 105/294 (35%), Positives = 169/294 (57%), Gaps = 1/294 (0%)
 Frame = -2

Query: 879  RLKPLLHKIISPHQAAFIKGRAIGDNTSMTNEIFHNXXXXXXXX*GWMAVKLDIAKAFDR 700
            RLK  L  I+S  Q+AF+  R I DN  + +E+ H+           MA K D++KA+DR
Sbjct: 523  RLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDR 582

Query: 699  LEWCFIDQVLERLGFSSRSRILINQCISTVSYNSF-KWFPFEENFPFQRFEMGDPMSPYL 523
            +EW F++ ++  LGF+++    I  C+++VSY+      P+    P +    GDP+SP L
Sbjct: 583  VEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPAL 642

Query: 522  FIIASEALSRLFLQEESLGNIHGIKVKRGAIPITHLLYADDLLIFCKATLEESKRMRQVI 343
            F++ +EAL  +  + E  G I GI+ +   + + HLL+ADD L+ CKAT +E + + Q +
Sbjct: 643  FVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCL 702

Query: 342  VKYCETSGQAVNWEKSSAYFSSNVHHDHQRFLKQHWNVKDFNENEKYLGVPIVLTSKKSE 163
             +Y + SGQ +N  KS+  F  NV    + ++K    +       KYLG+P  L+  K +
Sbjct: 703  SQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRD 762

Query: 162  NFEFLIDKVQKNITG*KAKVLSQASRGVLVKTVAQSIPVYTMSTYHIPMKICDK 1
             F F+ +K+Q  +TG  AK LSQ  + VL+K++A ++PVY MS + +P  +C K
Sbjct: 763  LFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQK 816



 Score = 47.0 bits (110), Expect(2) = 3e-56
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = -1

Query: 1048 VIEAIHNFFIFGMLPLTLNETFITLIPKITNPEHMSKFRPISL 920
            ++  I  FF  G+LP   N T I LIPKIT+P+ MS  RPISL
Sbjct: 466  ILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISL 508