BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022056
         (244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003574205.1| PREDICTED: DNA excision repair protein ERCC-...    70   2e-10
ref|NP_187172.1| DNA excision repair protein ERCC-1 [Arabidopsis...    69   3e-10
ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-...    69   3e-10
ref|XP_002512344.1| excision repair cross-complementing 1 ercc1,...    69   3e-10
ref|XP_002328427.1| predicted protein [Populus trichocarpa] gi|2...    69   3e-10

>ref|XP_003574205.1| PREDICTED: DNA excision repair protein ERCC-1-like [Brachypodium
           distachyon]
          Length = 391

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 30/34 (88%), Positives = 34/34 (100%)
 Frame = +1

Query: 88  RIMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRR 189
           RIMDSSME+LARCPGIGE+KVKR+YDTFHEPF+R
Sbjct: 266 RIMDSSMEELARCPGIGERKVKRIYDTFHEPFKR 299


>ref|NP_187172.1| DNA excision repair protein ERCC-1 [Arabidopsis thaliana]
           gi|55976606|sp|Q9MA98.1|ERCC1_ARATH RecName: Full=DNA
           excision repair protein ERCC-1; Short=AtERCC1;
           Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive
           7 gi|6729031|gb|AAF27027.1|AC009177_17 putative
           nucleotide repair protein [Arabidopsis thaliana]
           gi|9800490|gb|AAF99316.1|AF276082_1 ERCC1 [Arabidopsis
           thaliana] gi|15215614|gb|AAK91352.1| AT3g05210/T12H1_18
           [Arabidopsis thaliana] gi|21435979|gb|AAM51569.1|
           AT3g05210/T12H1_18 [Arabidopsis thaliana]
           gi|21618171|gb|AAM67221.1| putative nucleotide repair
           protein [Arabidopsis thaliana]
           gi|332640684|gb|AEE74205.1| DNA excision repair protein
           ERCC-1 [Arabidopsis thaliana]
          Length = 410

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 30/34 (88%), Positives = 34/34 (100%)
 Frame = +1

Query: 91  IMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRRA 192
           I+D+SMEDLARCPGIGE+KVKRLYDTFHEPF+RA
Sbjct: 288 IIDASMEDLARCPGIGERKVKRLYDTFHEPFKRA 321



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 24/26 (92%), Positives = 25/26 (96%)
 Frame = +2

Query: 2   EDVVKPILEVTKTALLHDCTLLCAWS 79
           ED VKP+LEVTKTALLHDCTLLCAWS
Sbjct: 201 EDTVKPLLEVTKTALLHDCTLLCAWS 226


>ref|XP_002281063.2| PREDICTED: DNA excision repair protein ERCC-1-like [Vitis vinifera]
           gi|296088298|emb|CBI36743.3| unnamed protein product
           [Vitis vinifera]
          Length = 398

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 30/33 (90%), Positives = 33/33 (100%)
 Frame = +1

Query: 91  IMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRR 189
           IMD+SMEDLARCPGIGE+KVKRLYDTFHEPF+R
Sbjct: 270 IMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 302



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 23/26 (88%), Positives = 26/26 (100%)
 Frame = +2

Query: 2   EDVVKPILEVTKTALLHDCTLLCAWS 79
           EDV+KP+LEVT+TALLHDCTLLCAWS
Sbjct: 183 EDVIKPLLEVTRTALLHDCTLLCAWS 208


>ref|XP_002512344.1| excision repair cross-complementing 1 ercc1, putative [Ricinus
           communis] gi|223548305|gb|EEF49796.1| excision repair
           cross-complementing 1 ercc1, putative [Ricinus communis]
          Length = 392

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 30/33 (90%), Positives = 33/33 (100%)
 Frame = +1

Query: 91  IMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRR 189
           IMD+SMEDLARCPGIGE+KVKRLYDTFHEPF+R
Sbjct: 265 IMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 297



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = +2

Query: 2   EDVVKPILEVTKTALLHDCTLLCAWS 79
           EDVVKP+LEVTKTALLHDCTLLCAWS
Sbjct: 178 EDVVKPLLEVTKTALLHDCTLLCAWS 203


>ref|XP_002328427.1| predicted protein [Populus trichocarpa] gi|222838142|gb|EEE76507.1|
           predicted protein [Populus trichocarpa]
          Length = 382

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 30/33 (90%), Positives = 33/33 (100%)
 Frame = +1

Query: 91  IMDSSMEDLARCPGIGEKKVKRLYDTFHEPFRR 189
           IMD+SMEDLARCPGIGE+KVKRLYDTFHEPF+R
Sbjct: 259 IMDASMEDLARCPGIGERKVKRLYDTFHEPFKR 291



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 25/26 (96%), Positives = 26/26 (100%)
 Frame = +2

Query: 2   EDVVKPILEVTKTALLHDCTLLCAWS 79
           EDVVKP+LEVTKTALLHDCTLLCAWS
Sbjct: 172 EDVVKPLLEVTKTALLHDCTLLCAWS 197