BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00022043
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containi...    76   3e-12
emb|CBI32762.3| unnamed protein product [Vitis vinifera]               76   3e-12
ref|XP_002515739.1| pentatricopeptide repeat-containing protein,...    75   6e-12
ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containi...    58   9e-07

>ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|222832609|gb|EEE71086.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
 Frame = -2

Query: 252 SNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNFLNR 73
           SN  +A+KI+KTLI +  K  +   S L SNL+S I   V SNP + + +CL+FFNFL +
Sbjct: 23  SNSELAQKIAKTLIKAGLKPFETTNSSLLSNLDSHITNLVFSNPNVPLHSCLNFFNFLRK 82

Query: 72  TQ----HKHDIYTHVVLICRVFEARKF 4
            Q    HK D+ +H+ ++ R+F+AR+F
Sbjct: 83  NQSFVSHKPDLQSHLSVVFRLFKARRF 109


>ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)
 Frame = -2

Query: 261 SLHSNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNF 82
           SL  NQ IA KISKTL+ S +KSLQ  T  L S+LNS+ +  +LSN  L  ++CLDFF+F
Sbjct: 19  SLKLNQEIAGKISKTLVSSGAKSLQT-TPSLLSSLNSQTVHLILSNHILTAESCLDFFHF 77

Query: 81  LNRTQHKHDIYTHVVLICRVFEARK 7
           + +  +K D+  ++ LI +++ +RK
Sbjct: 78  IRKNYYKPDLRAYITLIFKLYRSRK 102


>emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/85 (45%), Positives = 58/85 (68%)
 Frame = -2

Query: 261 SLHSNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNF 82
           SL  NQ IA KISKTL+ S +KSLQ  T  L S+LNS+ +  +LSN  L  ++CLDFF+F
Sbjct: 23  SLKLNQEIAGKISKTLVSSGAKSLQT-TPSLLSSLNSQTVHLILSNHILTAESCLDFFHF 81

Query: 81  LNRTQHKHDIYTHVVLICRVFEARK 7
           + +  +K D+  ++ LI +++ +RK
Sbjct: 82  IRKNYYKPDLRAYITLIFKLYRSRK 106


>ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545176|gb|EEF46686.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 613

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
 Frame = -2

Query: 249 NQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNFLNRT 70
           +Q IAEKI+K LI S  K L+  +S L SNL+S     VLSNP L  ++CL+FF  L + 
Sbjct: 23  SQEIAEKITKILIKSGLKPLETKSS-LLSNLDSYTTNLVLSNPNLPTRSCLNFFKCLQKN 81

Query: 69  Q----HKHDIYTHVVLICRVFEARKFV 1
           Q    HK D+  HV+LI R+F+ARKFV
Sbjct: 82  QSLICHKPDLRAHVILISRLFKARKFV 108


>ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
 Frame = -2

Query: 252 SNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNFLNR 73
           S Q IA  I+K ++ S  +  +  T  L SN +S +++ VLS+P L  ++CL FF+FL +
Sbjct: 2   SKQAIAANIAKLILKSGLQPFKT-TPSLLSNFDSRVMQLVLSDPNLPTRSCLRFFDFLRQ 60

Query: 72  T-QHKHDIYTHVVLICRVFEARKF 4
               K D+  H++L  R++ ARKF
Sbjct: 61  NPSRKPDLPAHLILFSRLYRARKF 84