BLASTX nr result
ID: Coptis25_contig00022043
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00022043 (265 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|2... 77 1e-12 ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containi... 76 3e-12 emb|CBI32762.3| unnamed protein product [Vitis vinifera] 76 3e-12 ref|XP_002515739.1| pentatricopeptide repeat-containing protein,... 75 6e-12 ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containi... 58 9e-07 >ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|222832609|gb|EEE71086.1| predicted protein [Populus trichocarpa] Length = 302 Score = 77.4 bits (189), Expect = 1e-12 Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 4/87 (4%) Frame = -2 Query: 252 SNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNFLNR 73 SN +A+KI+KTLI + K + S L SNL+S I V SNP + + +CL+FFNFL + Sbjct: 23 SNSELAQKIAKTLIKAGLKPFETTNSSLLSNLDSHITNLVFSNPNVPLHSCLNFFNFLRK 82 Query: 72 TQ----HKHDIYTHVVLICRVFEARKF 4 Q HK D+ +H+ ++ R+F+AR+F Sbjct: 83 NQSFVSHKPDLQSHLSVVFRLFKARRF 109 >ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32630-like [Vitis vinifera] Length = 625 Score = 75.9 bits (185), Expect = 3e-12 Identities = 39/85 (45%), Positives = 58/85 (68%) Frame = -2 Query: 261 SLHSNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNF 82 SL NQ IA KISKTL+ S +KSLQ T L S+LNS+ + +LSN L ++CLDFF+F Sbjct: 19 SLKLNQEIAGKISKTLVSSGAKSLQT-TPSLLSSLNSQTVHLILSNHILTAESCLDFFHF 77 Query: 81 LNRTQHKHDIYTHVVLICRVFEARK 7 + + +K D+ ++ LI +++ +RK Sbjct: 78 IRKNYYKPDLRAYITLIFKLYRSRK 102 >emb|CBI32762.3| unnamed protein product [Vitis vinifera] Length = 648 Score = 75.9 bits (185), Expect = 3e-12 Identities = 39/85 (45%), Positives = 58/85 (68%) Frame = -2 Query: 261 SLHSNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNF 82 SL NQ IA KISKTL+ S +KSLQ T L S+LNS+ + +LSN L ++CLDFF+F Sbjct: 23 SLKLNQEIAGKISKTLVSSGAKSLQT-TPSLLSSLNSQTVHLILSNHILTAESCLDFFHF 81 Query: 81 LNRTQHKHDIYTHVVLICRVFEARK 7 + + +K D+ ++ LI +++ +RK Sbjct: 82 IRKNYYKPDLRAYITLIFKLYRSRK 106 >ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 613 Score = 75.1 bits (183), Expect = 6e-12 Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 4/87 (4%) Frame = -2 Query: 249 NQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNFLNRT 70 +Q IAEKI+K LI S K L+ +S L SNL+S VLSNP L ++CL+FF L + Sbjct: 23 SQEIAEKITKILIKSGLKPLETKSS-LLSNLDSYTTNLVLSNPNLPTRSCLNFFKCLQKN 81 Query: 69 Q----HKHDIYTHVVLICRVFEARKFV 1 Q HK D+ HV+LI R+F+ARKFV Sbjct: 82 QSLICHKPDLRAHVILISRLFKARKFV 108 >ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32630-like [Cucumis sativus] Length = 606 Score = 57.8 bits (138), Expect = 9e-07 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 1/84 (1%) Frame = -2 Query: 252 SNQNIAEKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVLSNPRLKIQTCLDFFNFLNR 73 S Q IA I+K ++ S + + T L SN +S +++ VLS+P L ++CL FF+FL + Sbjct: 2 SKQAIAANIAKLILKSGLQPFKT-TPSLLSNFDSRVMQLVLSDPNLPTRSCLRFFDFLRQ 60 Query: 72 T-QHKHDIYTHVVLICRVFEARKF 4 K D+ H++L R++ ARKF Sbjct: 61 NPSRKPDLPAHLILFSRLYRARKF 84