BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021937
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             220   1e-55
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             206   3e-51
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                201   8e-50
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     183   1e-44
emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum]         182   4e-44

>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  220 bits (560), Expect = 1e-55
 Identities = 103/182 (56%), Positives = 145/182 (79%)
 Frame = -1

Query: 548  VTTGKFLGYIVTRRGIEANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCR 369
            VT+G+FLGY+VT+RGIEANP+QIR+++E+PSP+  +EVQRL GR+AALNRFIS+S+DKC 
Sbjct: 1018 VTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCL 1077

Query: 368  PLYRLLRNSADFAWTAECEQAFQGLKRYLGEIPLLSRPEEGEKLYLYLGVTDYAVSSVLV 189
            P Y LL+  A F W  + E+AF+ LK YL   P+L +PE GE LYLY+ V+D+AVSSVLV
Sbjct: 1078 PFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLV 1137

Query: 188  RVVDKIERPVYFQSKTMLDAETRYSRVEKYALALIFSTLKLKPYFEAHSVVVVTNLPLKQ 9
            R     +RP+++ SK++++AETRY  +EK ALA++ S  KL+PYF++H++ V+T+ PL+ 
Sbjct: 1138 REDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTDQPLRV 1197

Query: 8    AL 3
            AL
Sbjct: 1198 AL 1199


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  206 bits (523), Expect = 3e-51
 Identities = 101/182 (55%), Positives = 135/182 (74%)
 Frame = -1

Query: 548 VTTGKFLGYIVTRRGIEANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCR 369
           V +G+FLGYIVT RGIEAN  QI + + MPSP+  KEVQRL GR+AALNRFIS+S+DK  
Sbjct: 215 VPSGEFLGYIVTERGIEANSNQINAFLNMPSPRNFKEVQRLTGRIAALNRFISRSTDKSL 274

Query: 368 PLYRLLRNSADFAWTAECEQAFQGLKRYLGEIPLLSRPEEGEKLYLYLGVTDYAVSSVLV 189
           P Y++L+ +  F W  +CE+AF  LK YL   P+LS+PE  EKLYLY+ V+++AVS VLV
Sbjct: 275 PFYQILKGNKGFLWDEKCEEAFGQLKAYLTTPPILSKPEVDEKLYLYVSVSNHAVSGVLV 334

Query: 188 RVVDKIERPVYFQSKTMLDAETRYSRVEKYALALIFSTLKLKPYFEAHSVVVVTNLPLKQ 9
           R     ++P+Y+ SK+M D ETRY+ +EK ALA++ S  KL+PYF++H V V+TN PL+ 
Sbjct: 335 REDRGEQKPIYYVSKSMTDPETRYTMMEKLALAVVTSARKLRPYFQSHPVQVLTNQPLRT 394

Query: 8   AL 3
            L
Sbjct: 395 IL 396


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  201 bits (510), Expect = 8e-50
 Identities = 96/179 (53%), Positives = 134/179 (74%)
 Frame = -1

Query: 548 VTTGKFLGYIVTRRGIEANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCR 369
           V +GKFLGY++T RGIE NP+QI++++E+  P+  KEVQ+LAG  A LNRFIS+S+D+CR
Sbjct: 287 VDSGKFLGYMITHRGIEFNPDQIKAILELHPPRNPKEVQKLAGMFAVLNRFISRSADRCR 346

Query: 368 PLYRLLRNSADFAWTAECEQAFQGLKRYLGEIPLLSRPEEGEKLYLYLGVTDYAVSSVLV 189
           P YRLL    DF WT EC  AF+ L++YL    +LSRPE+ E LY YL V +YAVS VL+
Sbjct: 347 PFYRLLHKWKDFLWTDECNLAFEDLRQYLANPLILSRPEKKEVLYAYLAVMNYAVSLVLI 406

Query: 188 RVVDKIERPVYFQSKTMLDAETRYSRVEKYALALIFSTLKLKPYFEAHSVVVVTNLPLK 12
           R  D +++P+Y+ SK++ +AE RY  +EK  LA++ +T KL  YF+AH++VV+T LPL+
Sbjct: 407 RNDDGVQKPIYYISKSLQEAERRYLPLEKALLAVVHATRKLPHYFQAHTIVVLTQLPLQ 465


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  183 bits (465), Expect = 1e-44
 Identities = 90/182 (49%), Positives = 129/182 (70%)
 Frame = -1

Query: 548  VTTGKFLGYIVTRRGIEANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCR 369
            V  GKFLG +V+ RGI+ANPE++++++++  P+  KEV  L GR+AAL RFIS+S+DK  
Sbjct: 504  VRAGKFLGVLVSARGIDANPEKVQAILDLLEPRNRKEVMMLTGRMAALARFISRSTDKST 563

Query: 368  PLYRLLRNSADFAWTAECEQAFQGLKRYLGEIPLLSRPEEGEKLYLYLGVTDYAVSSVLV 189
            P +++L+ + DF+W  E   AF+ LK +L  +P LSRP  GE LYLY+ VT   VS+V++
Sbjct: 564  PFFKVLKGNKDFSWGEEQSTAFRQLKAHLITLPTLSRPMLGETLYLYIAVTSATVSAVII 623

Query: 188  RVVDKIERPVYFQSKTMLDAETRYSRVEKYALALIFSTLKLKPYFEAHSVVVVTNLPLKQ 9
            R  DK + P+YF S T+L AET Y  +EK A A++ +  KLKPYF AH V V+T+ PL++
Sbjct: 624  REEDKQQHPIYFISHTLLAAETNYPLIEKAAFAVVVAARKLKPYFNAHPVTVLTDQPLEK 683

Query: 8    AL 3
            AL
Sbjct: 684  AL 685


>emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum]
          Length = 1455

 Score =  182 bits (461), Expect = 4e-44
 Identities = 84/179 (46%), Positives = 130/179 (72%)
 Frame = -1

Query: 539  GKFLGYIVTRRGIEANPEQIRSLVEMPSPQTVKEVQRLAGRVAALNRFISKSSDKCRPLY 360
            GKFLG++VT+RGI+ NPE+ +++++MP PQT+++VQRL GR+A+L RFISK+++K  P +
Sbjct: 870  GKFLGFLVTQRGIKVNPEKSKAILDMPPPQTIRDVQRLTGRMASLIRFISKAAEKGLPFF 929

Query: 359  RLLRNSADFAWTAECEQAFQGLKRYLGEIPLLSRPEEGEKLYLYLGVTDYAVSSVLVRVV 180
            ++L N  +F W+ EC++AF  LK YL   P L +P++GE+LY+YL V    VS+VL R  
Sbjct: 930  KVLHNVKNFQWSDECQKAFDDLKGYLLCPPPLVKPQQGERLYVYLAVRKEVVSAVLARAE 989

Query: 179  DKIERPVYFQSKTMLDAETRYSRVEKYALALIFSTLKLKPYFEAHSVVVVTNLPLKQAL 3
             +   P+Y+ S+T+ DA+TRYS +EK+A AL+ +  KL+ YF  H + ++T  PL+  L
Sbjct: 990  GRDHLPIYYTSRTLKDAKTRYSLIEKFAFALVTTAQKLRSYFLTHPITILTKHPLRAIL 1048