BLASTX nr result
ID: Coptis25_contig00021936
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00021936
(730 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 72 6e-15
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 69 3e-14
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 71 3e-14
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 69 2e-13
emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera] 65 1e-11
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 71.6 bits (174), Expect(2) = 6e-15
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 9/124 (7%)
Frame = -2
Query: 597 VCDIYCNSPQAT------QVSGDFKCACRVTKYYLVEWLGELLLAAKYIRIIQ--DEPGY 442
VCD+ NSP+ + Q+ GD + YLV LLL +Y+ + D Y
Sbjct: 234 VCDVNGNSPKVSFIETPRQIGGDMQ--------YLVSSGDGLLLVTRYLDLDVEFDIFIY 285
Query: 441 KTERFEVYKITFNKKEWEEVKDLGQHLFFLGFNTSVSMLASDTSTFRRNCIYFTDD-NAT 265
KT RFEV+K+ N WE V LG + F+G N+S+++ AS S +CIY+TDD +A
Sbjct: 286 KTARFEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDYSAN 345
Query: 264 EYIG 253
Y G
Sbjct: 346 NYDG 349
Score = 35.0 bits (79), Expect(2) = 6e-15
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 727 GDNSWSPIQTRIPAVAAVDDVIYFKNQFYNVNRCGKVAVC 608
GD W+ ++ + + +DVIYF FY VN+ G++ VC
Sbjct: 199 GDECWNIVEN---SRSFSEDVIYFNGLFYAVNKAGQIVVC 235
>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 398
Score = 68.6 bits (166), Expect(2) = 3e-14
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 14/122 (11%)
Frame = -2
Query: 597 VCDIYCNSPQAT------QVSGDFKCACRVTKYYLVEWLGELLLAAKYIRIIQD------ 454
+CDI +SP+ + Q GD + YLV ELLL +Y+ + +
Sbjct: 233 ICDISSDSPRVSFMETPRQAGGDMQ--------YLVNSGDELLLVTRYLDLEYEFDHPDM 284
Query: 453 EPG--YKTERFEVYKITFNKKEWEEVKDLGQHLFFLGFNTSVSMLASDTSTFRRNCIYFT 280
EP Y+T RFEV+++ +N +W + LG F+G N+S+S+ A+D S NCIY+T
Sbjct: 285 EPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSGCMGNCIYYT 344
Query: 279 DD 274
DD
Sbjct: 345 DD 346
Score = 35.8 bits (81), Expect(2) = 3e-14
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 727 GDNSWSPIQTRIPAVAAVDDVIYFKNQFYNVNRCGKVAVC 608
GD SWS ++ A + +DVI+ FY VN+ G++ +C
Sbjct: 198 GDKSWSLVEN---ARSFCEDVIFVNGMFYAVNKAGQIVIC 234
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 71.2 bits (173), Expect(2) = 3e-14
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 15/139 (10%)
Frame = -2
Query: 612 YVTMSVCDIYCNSPQAT------QVSGDFKCACRVTKYYLVEWLGELLLAAKYIRIIQD- 454
Y +++VCD+ +SP+ + Q GD + YLVE ELLL +Y+ + D
Sbjct: 225 YGSIAVCDVSGSSPRVSIIEMPQQFGGDLQ--------YLVESGEELLLVTRYLDLTYDV 276
Query: 453 EPG-----YKTERFEVYKITFNKKEWEEVKDLGQHLFFLGFNTSVSMLASDTSTFRRNCI 289
EP Y+T RF+V ++ WE V LG FLG N S+S+ + D + NCI
Sbjct: 277 EPDQTSLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCI 336
Query: 288 YFTDDNATEY---IGTDKD 241
Y+TDD + + IG ++D
Sbjct: 337 YYTDDYSEDNYDGIGGEQD 355
Score = 33.1 bits (74), Expect(2) = 3e-14
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -1
Query: 724 DNSWSPIQTRIPAVAAVDDVIYFKNQFYNVNRCGKVAVC 608
D+SW+ ++ A + +DVI+ + FY VN+ G +AVC
Sbjct: 196 DDSWTFLED---AQSYAEDVIFHRGLFYAVNKYGSIAVC 231
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 68.9 bits (167), Expect(2) = 2e-13
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 15/139 (10%)
Frame = -2
Query: 612 YVTMSVCDIYCNSPQAT------QVSGDFKCACRVTKYYLVEWLGELLLAAKYIRIIQDE 451
Y +++VCD+ +SP+ + Q GD + YLVE ELLL +Y+ + D
Sbjct: 225 YGSIAVCDVSGSSPRVSIIEMPQQFGGDLQ--------YLVESGEELLLVTRYLDLTYDV 276
Query: 450 PG------YKTERFEVYKITFNKKEWEEVKDLGQHLFFLGFNTSVSMLASDTSTFRRNCI 289
Y+T RF+V ++ WE V LG FLG N S+S+ + D + NCI
Sbjct: 277 EXDQTSLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPGCKGNCI 336
Query: 288 YFTDDNATEY---IGTDKD 241
Y+TDD + + IG ++D
Sbjct: 337 YYTDDYSEDNYDGIGGEQD 355
Score = 32.3 bits (72), Expect(2) = 2e-13
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -1
Query: 724 DNSWSPIQTRIPAVAAVDDVIYFKNQFYNVNRCGKVAVC 608
D+SW+ ++ A + +DVI+ + FY VN+ G +AVC
Sbjct: 196 DDSWTFLED---AQSYSEDVIFHRGLFYAVNKYGSIAVC 231
>emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]
Length = 1290
Score = 64.7 bits (156), Expect(2) = 1e-11
Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = -2
Query: 516 YLVEWLGELLLAAK--YIRIIQDEPGYKTERFEVYKITFNKKEWEEVKDLGQHLFFLGFN 343
YLVE GE+ + + Y +D P +T F V K+ K WEEV++L FFLG N
Sbjct: 1161 YLVESGGEIYMVTRNLYDTARRDIPYMRTWTFSVLKLDMCNKRWEEVENLDHCSFFLGNN 1220
Query: 342 TSVSMLASDTSTFRRNCIYFTDD 274
S S ASD FR+N IYFTDD
Sbjct: 1221 HSFSTWASDYPEFRKNSIYFTDD 1243
Score = 30.8 bits (68), Expect(2) = 1e-11
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 730 PGDNSWSPIQTRIPAVAAVDDVIYFKNQFYNVNRCGKVAVC 608
PG +W+ +++ VDD+IYF F VN +V +C
Sbjct: 1094 PGHQTWTLLESES---GPVDDIIYFNGSFLAVNLSWEVWIC 1131