BLASTX nr result
ID: Coptis25_contig00021895
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00021895
(1773 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera] 56 2e-11
emb|CAN67963.1| hypothetical protein VITISV_027812 [Vitis vinifera] 60 6e-11
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 44 8e-11
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar... 57 5e-10
emb|CAN75273.1| hypothetical protein VITISV_043734 [Vitis vinifera] 55 5e-10
>emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]
Length = 731
Score = 55.8 bits (133), Expect(3) = 2e-11
Identities = 23/47 (48%), Positives = 35/47 (74%)
Frame = +2
Query: 800 QSLIHTDTWSLVPYSPRQNLVGSI*VFKIKYNADGSIGRHKARFVAK 940
++L+ DTW LVPY P+ N+VG+ VFK+K++ D ++ +HKA VAK
Sbjct: 298 KALMRNDTWDLVPYQPQYNVVGNKWVFKLKFHLDDTLNKHKASLVAK 344
Score = 35.8 bits (81), Expect(3) = 2e-11
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +1
Query: 952 GLDYSETYNSVAKLFTIK---SITLQFD*PIKKLDVNSNFLHKNLKEGSF 1092
G+D+SETY+ KL TI+ ++ + I++LD+N+ FL+ L+E F
Sbjct: 351 GVDFSETYSPAIKLATIRVVLTLAIAQGWEIRQLDINNAFLNGYLQENVF 400
Score = 24.6 bits (52), Expect(3) = 2e-11
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +3
Query: 612 PTQPTLRKQDHSCGIFKPKISSTTNHSLPQDLVAKLKDIPSTPTCYTQACKNLKQREAMA 791
P P + + GIFKPK+ + H L L + P C Q + + AM
Sbjct: 243 PCHPMITRA--KAGIFKPKVYAALKHPLSFSLGS------IEPMCVKQVLADPNWKIAMK 294
Query: 792 LEY 800
EY
Sbjct: 295 EEY 297
>emb|CAN67963.1| hypothetical protein VITISV_027812 [Vitis vinifera]
Length = 396
Score = 60.5 bits (145), Expect(2) = 6e-11
Identities = 25/47 (53%), Positives = 37/47 (78%)
Frame = +2
Query: 800 QSLIHTDTWSLVPYSPRQNLVGSI*VFKIKYNADGSIGRHKARFVAK 940
++L+ TW LVPY P+ N+VG+ VFK+K++ DG++ +HKARFVAK
Sbjct: 140 KALMRNHTWDLVPYQPQYNVVGNKWVFKLKFHPDGTLNKHKARFVAK 186
Score = 34.7 bits (78), Expect(2) = 6e-11
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +1
Query: 952 GLDYSETYNSVAKLFTIK---SITLQFD*PIKKLDVNSNFLHKNLKEGSF 1092
G+D+S TY+ V K TI+ ++T+ I++LD+N+ FL++ L+E F
Sbjct: 193 GVDFSITYSPVIKPATIRVVLTLTIAQGWEIRQLDINNAFLNRYLQEDVF 242
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 44.3 bits (103), Expect(3) = 8e-11
Identities = 22/47 (46%), Positives = 28/47 (59%)
Frame = +2
Query: 800 QSLIHTDTWSLVPYSPRQNLVGSI*VFKIKYNADGSIGRHKARFVAK 940
++L+ TWS V + VG VFK+K DGS+ RHKAR VAK
Sbjct: 1014 RALMKNKTWSFVSLLTNRTYVGCRWVFKLKMYPDGSVSRHKARLVAK 1060
Score = 42.4 bits (98), Expect(3) = 8e-11
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2
Query: 68 QHKLDYKAKPCAFVGYSIIFKGYRCLD 148
+HKLD+++ PC F+GYS KGY+CL+
Sbjct: 802 KHKLDFRSSPCTFLGYSSKHKGYKCLN 828
Score = 27.3 bits (59), Expect(3) = 8e-11
Identities = 50/206 (24%), Positives = 77/206 (37%)
Frame = +3
Query: 183 FNEENFPSQTKSQNTSQENSYSQVTLPLIPRLVXXXXXXXXXXXXNYDTSFXXXXXXXXX 362
F+E FP Q Q S+S V LP I LV + TS
Sbjct: 841 FDETKFPFXDXLQKPVQXVSHSTVGLPCI-XLVKNLXPJSXSXSLSLPTSSAQSSHQLDE 899
Query: 363 XQHSKVQSPVQSHTNNLKYNQTLFHHYMKHIQTHQLEIQHQTQAQSSGSTSPSAEIYLLA 542
S ++S VQ +N + T+ S S S S+ +Y+L
Sbjct: 900 NLGSDIRS-VQQDLSNTDSSSTV------------------PILNXSASISSSSNLYVLP 940
Query: 543 *FPHIHHLNNQDHMTTRSKTVQEPTQPTLRKQDHSCGIFKPKISSTTNHSLPQDLVAKLK 722
+ +++ + + ++ V P QP GIFKPK+ + DL +
Sbjct: 941 GTIPLSTNSDEPNESINTRPVTLPQQPHHMVTRSKNGIFKPKVYTF-------DLNVE-- 991
Query: 723 DIPSTPTCYTQACKNLKQREAMALEY 800
P + +A + K +EAM E+
Sbjct: 992 ----EPNTFQEAISHPKWKEAMDEEF 1013
>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
Length = 1522
Score = 56.6 bits (135), Expect(2) = 5e-10
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = +2
Query: 815 TDTWSLVPYSPRQNLVGSI*VFKIKYNADGSIGRHKARFVAK 940
T+TW+LVPYSP N++GS+ VF+ K +ADGS+ + KAR VAK
Sbjct: 942 TETWTLVPYSPNMNVLGSMWVFRTKLHADGSLDKLKARLVAK 983
Score = 35.4 bits (80), Expect(2) = 5e-10
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
Frame = +1
Query: 913 KTQSQVCGQGKKQ--GLDYSETYNSVAKLFTIKSI-----TLQFD*PIKKLDVNSNFLHK 1071
K ++++ +G KQ G+DY ETY+ V + T++ I L+++ +K++DV + FLH
Sbjct: 975 KLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVATVLKWE--LKQMDVKNAFLHG 1032
Query: 1072 NLKE 1083
+L E
Sbjct: 1033 DLTE 1036
>emb|CAN75273.1| hypothetical protein VITISV_043734 [Vitis vinifera]
Length = 1254
Score = 55.5 bits (132), Expect(3) = 5e-10
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = +2
Query: 800 QSLIHTDTWSLVPYSPRQNLVGSI*VFKIKYNADGSIGRHKARFVAK 940
Q+L + DTW LVPY + N+VG+ VFK+KYN D S+ ++K R VAK
Sbjct: 115 QALKNNDTWDLVPYKSKYNVVGNKWVFKLKYNYDCSLNKYKVRLVAK 161
Score = 33.1 bits (74), Expect(3) = 5e-10
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +1
Query: 955 LDYSETYNSVAKLFTIK---SITLQFD*PIKKLDVNSNFLHKNLKEGSF 1092
+D+SETY+ V K FTI+ ++ +Q I++LDVN+ + +L+E +
Sbjct: 169 VDFSETYSLVIKPFTIRVVLALAMQQGWDIRQLDVNNALKNGHLQEDMY 217
Score = 22.7 bits (47), Expect(3) = 5e-10
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = +3
Query: 450 HIQTHQLEIQHQTQAQSSGSTSPSAEIYLLA*FPHIHHLNNQDHMTTRSKTVQEPTQPTL 629
H Q H +H T + S+ +T P ++ P I Q +T T P +
Sbjct: 12 HSQLHDQLEEHVTHSGSTTTTFPQSKQLFQ---PIIIQPCQQPVLTFEPNPY---THPMV 65
Query: 630 RKQDHSCGIFKPKISSTTNHSL 695
+ GI+KPK+ + H L
Sbjct: 66 TRS--KAGIYKPKLFNVLKHPL 85