BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021788
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   191   4e-47
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...   178   4e-43
ref|NP_175971.3| transcription initiation factor TFIIH subunit H...   169   2e-40
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab...   167   6e-40
ref|XP_002310512.1| predicted protein [Populus trichocarpa] gi|2...   161   4e-38

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  191 bits (486), Expect = 4e-47
 Identities = 94/110 (85%), Positives = 99/110 (90%)
 Frame = -1

Query: 472 PQESVLDTLPKRTKEELLHHWASIQELLKHFWSSYPITTTYLDTKVSRLKDAMSEIYPKL 293
           PQESVLD LP  TKEELLHHW SIQELL+HFWSSYPITTTYL TK SRLKDAMS+IYPKL
Sbjct: 491 PQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKL 550

Query: 292 QRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVKGGERLNG 143
           Q IKESVQSDFRHQ+SLLVQPMLQALDAAFAHYDA+ QKRS + GER NG
Sbjct: 551 QEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGERPNG 600


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 729

 Score =  178 bits (452), Expect = 4e-43
 Identities = 86/112 (76%), Positives = 100/112 (89%)
 Frame = -1

Query: 472 PQESVLDTLPKRTKEELLHHWASIQELLKHFWSSYPITTTYLDTKVSRLKDAMSEIYPKL 293
           PQES+L++LP  TKEELLHHW SIQELLKHFWSSYPITT+YL TKVSRLKDAM++IY +L
Sbjct: 618 PQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQL 677

Query: 292 QRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVKGGERLNGCT 137
           + IKE+V +DFRHQ+SLLV+PM QALDAAF H+DA+ QKRSVK GERLNG T
Sbjct: 678 EEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGYT 729


>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
           thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
           Full=Probable RNA polymerase II transcription factor B
           subunit 1-1; AltName: Full=General transcription and DNA
           repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
           Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332195172|gb|AEE33293.1| transcription initiation
           factor TFIIH subunit H1 [Arabidopsis thaliana]
          Length = 591

 Score =  169 bits (428), Expect = 2e-40
 Identities = 80/110 (72%), Positives = 92/110 (83%)
 Frame = -1

Query: 472 PQESVLDTLPKRTKEELLHHWASIQELLKHFWSSYPITTTYLDTKVSRLKDAMSEIYPKL 293
           P+ES LD LPK TK+E+LHHW SIQELLKHFWSSYPITTTYL TKV +LKDAMS  Y KL
Sbjct: 480 PRESFLDRLPKSTKDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKL 539

Query: 292 QRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVKGGERLNG 143
           + +KESVQSD RHQ+SLLV+PM QALDAAF HY+ + Q+R+ K GER NG
Sbjct: 540 EAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPNG 589


>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
           lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
           ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
          Length = 592

 Score =  167 bits (424), Expect = 6e-40
 Identities = 81/111 (72%), Positives = 94/111 (84%), Gaps = 1/111 (0%)
 Frame = -1

Query: 472 PQESVLDTLPKRTKEELLHHWASIQELLKHFWSSYPITTTYLDTKVSRLKDAMSEIYPKL 293
           P+ES LD LPK TK+E+LHHW SIQELL+HFWSSYPITTTYL TKV +LKDAMS  Y KL
Sbjct: 480 PRESFLDRLPKSTKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKL 539

Query: 292 QRIKESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVK-GGERLNG 143
           + +KESVQSD RHQ+SLLV+PM QALDAAF HY+A+ Q+R+ K GGER NG
Sbjct: 540 EAMKESVQSDLRHQVSLLVRPMQQALDAAFQHYEADLQRRTAKSGGERPNG 590


>ref|XP_002310512.1| predicted protein [Populus trichocarpa] gi|222853415|gb|EEE90962.1|
           predicted protein [Populus trichocarpa]
          Length = 603

 Score =  161 bits (408), Expect = 4e-38
 Identities = 78/109 (71%), Positives = 91/109 (83%)
 Frame = -1

Query: 463 SVLDTLPKRTKEELLHHWASIQELLKHFWSSYPITTTYLDTKVSRLKDAMSEIYPKLQRI 284
           SVLDTLP   KEELL+HW S+QELLKH+WSSYPITTTYL TKVSRLKDAMS+I  +LQ +
Sbjct: 495 SVLDTLPNTIKEELLYHWTSLQELLKHYWSSYPITTTYLYTKVSRLKDAMSKIDSQLQEL 554

Query: 283 KESVQSDFRHQISLLVQPMLQALDAAFAHYDANTQKRSVKGGERLNGCT 137
           KESVQSD RHQ++LL++PM QAL+AA  HYDA  QKRS + G+R NG T
Sbjct: 555 KESVQSDLRHQVTLLLRPMQQALEAAMQHYDAELQKRSARSGDRSNGYT 603