BLASTX nr result

ID: Coptis25_contig00021759 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021759
         (1132 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|...    87   6e-15
ref|XP_003554261.1| PREDICTED: F-box/kelch-repeat protein SKIP30...    86   2e-14
ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30...    85   4e-14
ref|XP_002307595.1| f-box family protein [Populus trichocarpa] g...    83   1e-13
ref|XP_003521251.1| PREDICTED: F-box/kelch-repeat protein SKIP30...    82   2e-13

>ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|223535945|gb|EEF37604.1|
            Protein AFR, putative [Ricinus communis]
          Length = 345

 Score = 87.4 bits (215), Expect = 6e-15
 Identities = 46/98 (46%), Positives = 62/98 (63%)
 Frame = -1

Query: 1123 HSWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHL 944
            HSWRSA+ S ELF+AR EV +++DL+  CA +P  L QLY   RDLW+ LPV PS++ HL
Sbjct: 33   HSWRSAIRSPELFKARQEVGSAEDLLCVCAFEPENLWQLYDPLRDLWITLPVLPSKIRHL 92

Query: 943  ANLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
            A+ GVVST  K   +   +    P+       FA+N+V
Sbjct: 93   AHFGVVSTAGKLYVLGGGSDAVDPLTGDQDGNFATNEV 130



 Score = 62.0 bits (149), Expect(2) = 3e-08
 Identities = 33/67 (49%), Positives = 43/67 (64%)
 Frame = -2

Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
           DAVDPLTGD +G+    + WSY  ++ Q A R  MLV  A F CC+   K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGNFATNEVWSYDPVIRQWALRASMLVPRAMFACCVLKGKIVVAGGFTSC 171

Query: 705 RKSITRS 685
           RKSI+++
Sbjct: 172 RKSISQA 178



 Score = 23.1 bits (48), Expect(2) = 3e-08
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 689 DPEKDVWLGSCNT*SSSRNSAYFGLV 612
           DPEKDVW+   +    + NSA  G+V
Sbjct: 182 DPEKDVWIPIPDL-HRTHNSACSGIV 206


>ref|XP_003554261.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]
          Length = 345

 Score = 85.5 bits (210), Expect = 2e-14
 Identities = 42/97 (43%), Positives = 61/97 (62%)
 Frame = -1

Query: 1120 SWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHLA 941
            SW++A+CS ELF+AR EV +++DL+  CA DP  L QLY   +DLW+ LPV PS++ HL+
Sbjct: 34   SWQAAICSPELFKARQEVGSTEDLLCVCAFDPENLWQLYDPMQDLWITLPVLPSKIRHLS 93

Query: 940  NLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
            N G VST  K   +   +    P+       FA+++V
Sbjct: 94   NFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEV 130



 Score = 60.1 bits (144), Expect(2) = 1e-07
 Identities = 32/67 (47%), Positives = 42/67 (62%)
 Frame = -2

Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
           DAVDPLTGD +G     + WSY  +  + A R  MLV  + F CC+ + K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGCFATDEVWSYDPVAREWASRASMLVPRSMFACCVLNGKIVVAGGFTSC 171

Query: 705 RKSITRS 685
           RKSI++S
Sbjct: 172 RKSISQS 178



 Score = 22.7 bits (47), Expect(2) = 1e-07
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 707 SGSPSQDPEKDVWLGSCNT*SSSRNSAYFGLV 612
           S S   DP+KD+W+   +    + NSA  G+V
Sbjct: 176 SQSEMYDPDKDIWIPMPDL-HRTHNSACSGVV 206


>ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 1 [Vitis
            vinifera] gi|359479635|ref|XP_003632310.1| PREDICTED:
            F-box/kelch-repeat protein SKIP30-like isoform 2 [Vitis
            vinifera] gi|359479637|ref|XP_003632311.1| PREDICTED:
            F-box/kelch-repeat protein SKIP30-like isoform 3 [Vitis
            vinifera]
          Length = 345

 Score = 84.7 bits (208), Expect = 4e-14
 Identities = 44/97 (45%), Positives = 59/97 (60%)
 Frame = -1

Query: 1120 SWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHLA 941
            SWR A+   ELF+AR EV +S+DL+  CA DP  L QLY  R+DLW++LPV PS + HLA
Sbjct: 34   SWRDAIRGPELFKARQEVGSSEDLLCVCAFDPENLWQLYDPRKDLWISLPVLPSRIRHLA 93

Query: 940  NLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
            + G VST  K   +   +    P+       FA+N+V
Sbjct: 94   HFGAVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130



 Score = 66.6 bits (161), Expect(2) = 3e-09
 Identities = 35/67 (52%), Positives = 44/67 (65%)
 Frame = -2

Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
           DAVDPLTGD +GS    + WSY  ++ Q A R  MLV  A F CC+ D K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGSFATNEVWSYDPIIRQWAPRAPMLVPRAMFACCVLDGKIVVAGGFTSC 171

Query: 705 RKSITRS 685
           RKSI+++
Sbjct: 172 RKSISQA 178



 Score = 21.9 bits (45), Expect(2) = 3e-09
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 689 DPEKDVWLGSCNT*SSSRNSAYFGLV 612
           DPEKD W+ S      + NSA  G+V
Sbjct: 182 DPEKDAWV-SIPDLHRTHNSACSGVV 206


>ref|XP_002307595.1| f-box family protein [Populus trichocarpa]
            gi|118482816|gb|ABK93324.1| unknown [Populus trichocarpa]
            gi|222857044|gb|EEE94591.1| f-box family protein [Populus
            trichocarpa]
          Length = 345

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 43/97 (44%), Positives = 60/97 (61%)
 Frame = -1

Query: 1120 SWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHLA 941
            SWR+ + S ELF+AR EV +++DL+  CA DP  L QLY   RDLW+ LPV PS++ HLA
Sbjct: 34   SWRAVVRSPELFKARQEVGSAEDLLCVCAFDPENLWQLYDPHRDLWITLPVLPSKIRHLA 93

Query: 940  NLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
            + GVVS+  K   +   +    P+       FA+N+V
Sbjct: 94   HFGVVSSAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130



 Score = 59.7 bits (143), Expect(2) = 2e-07
 Identities = 34/67 (50%), Positives = 42/67 (62%)
 Frame = -2

Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
           DAVDPLTGD +GS    + WSY  +L Q A R  MLV  A F C   + K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGSFATNEVWSYDPVLRQWAARASMLVPRAMFACGTLNGKIVVAGGFTSC 171

Query: 705 RKSITRS 685
           RKSI+++
Sbjct: 172 RKSISQA 178



 Score = 22.3 bits (46), Expect(2) = 2e-07
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 689 DPEKDVWL 666
           DPEKDVW+
Sbjct: 182 DPEKDVWI 189


>ref|XP_003521251.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]
          Length = 345

 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 42/97 (43%), Positives = 60/97 (61%)
 Frame = -1

Query: 1120 SWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHLA 941
            SW++A+ S ELF+AR EV +++DL+  CA DP  L QLY   RDLW+ LPV PS++ HL+
Sbjct: 34   SWQAAIRSPELFKARQEVGSTEDLLCVCAFDPENLWQLYDPMRDLWITLPVLPSKIRHLS 93

Query: 940  NLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
            N G VST  K   +   +    P+       FA+++V
Sbjct: 94   NFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEV 130



 Score = 60.5 bits (145), Expect(2) = 2e-07
 Identities = 32/67 (47%), Positives = 43/67 (64%)
 Frame = -2

Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
           DAVDPLTGD +G     + WSY  ++ Q A R  MLV  + F CC+ + K VVA G T+ 
Sbjct: 112 DAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSC 171

Query: 705 RKSITRS 685
           RKSI+++
Sbjct: 172 RKSISQA 178



 Score = 21.9 bits (45), Expect(2) = 2e-07
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 689 DPEKDVWLGSCNT*SSSRNSAYFGLV 612
           DP+KDVW+   +    + NSA  G+V
Sbjct: 182 DPDKDVWIPMPDL-HRTHNSACSGVV 206


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