BLASTX nr result
ID: Coptis25_contig00021759
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00021759
(1132 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|... 87 6e-15
ref|XP_003554261.1| PREDICTED: F-box/kelch-repeat protein SKIP30... 86 2e-14
ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30... 85 4e-14
ref|XP_002307595.1| f-box family protein [Populus trichocarpa] g... 83 1e-13
ref|XP_003521251.1| PREDICTED: F-box/kelch-repeat protein SKIP30... 82 2e-13
>ref|XP_002524761.1| Protein AFR, putative [Ricinus communis] gi|223535945|gb|EEF37604.1|
Protein AFR, putative [Ricinus communis]
Length = 345
Score = 87.4 bits (215), Expect = 6e-15
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = -1
Query: 1123 HSWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHL 944
HSWRSA+ S ELF+AR EV +++DL+ CA +P L QLY RDLW+ LPV PS++ HL
Sbjct: 33 HSWRSAIRSPELFKARQEVGSAEDLLCVCAFEPENLWQLYDPLRDLWITLPVLPSKIRHL 92
Query: 943 ANLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
A+ GVVST K + + P+ FA+N+V
Sbjct: 93 AHFGVVSTAGKLYVLGGGSDAVDPLTGDQDGNFATNEV 130
Score = 62.0 bits (149), Expect(2) = 3e-08
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = -2
Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
DAVDPLTGD +G+ + WSY ++ Q A R MLV A F CC+ K VVA G T+
Sbjct: 112 DAVDPLTGDQDGNFATNEVWSYDPVIRQWALRASMLVPRAMFACCVLKGKIVVAGGFTSC 171
Query: 705 RKSITRS 685
RKSI+++
Sbjct: 172 RKSISQA 178
Score = 23.1 bits (48), Expect(2) = 3e-08
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 689 DPEKDVWLGSCNT*SSSRNSAYFGLV 612
DPEKDVW+ + + NSA G+V
Sbjct: 182 DPEKDVWIPIPDL-HRTHNSACSGIV 206
>ref|XP_003554261.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]
Length = 345
Score = 85.5 bits (210), Expect = 2e-14
Identities = 42/97 (43%), Positives = 61/97 (62%)
Frame = -1
Query: 1120 SWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHLA 941
SW++A+CS ELF+AR EV +++DL+ CA DP L QLY +DLW+ LPV PS++ HL+
Sbjct: 34 SWQAAICSPELFKARQEVGSTEDLLCVCAFDPENLWQLYDPMQDLWITLPVLPSKIRHLS 93
Query: 940 NLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
N G VST K + + P+ FA+++V
Sbjct: 94 NFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEV 130
Score = 60.1 bits (144), Expect(2) = 1e-07
Identities = 32/67 (47%), Positives = 42/67 (62%)
Frame = -2
Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
DAVDPLTGD +G + WSY + + A R MLV + F CC+ + K VVA G T+
Sbjct: 112 DAVDPLTGDQDGCFATDEVWSYDPVAREWASRASMLVPRSMFACCVLNGKIVVAGGFTSC 171
Query: 705 RKSITRS 685
RKSI++S
Sbjct: 172 RKSISQS 178
Score = 22.7 bits (47), Expect(2) = 1e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 707 SGSPSQDPEKDVWLGSCNT*SSSRNSAYFGLV 612
S S DP+KD+W+ + + NSA G+V
Sbjct: 176 SQSEMYDPDKDIWIPMPDL-HRTHNSACSGVV 206
>ref|XP_003632309.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform 1 [Vitis
vinifera] gi|359479635|ref|XP_003632310.1| PREDICTED:
F-box/kelch-repeat protein SKIP30-like isoform 2 [Vitis
vinifera] gi|359479637|ref|XP_003632311.1| PREDICTED:
F-box/kelch-repeat protein SKIP30-like isoform 3 [Vitis
vinifera]
Length = 345
Score = 84.7 bits (208), Expect = 4e-14
Identities = 44/97 (45%), Positives = 59/97 (60%)
Frame = -1
Query: 1120 SWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHLA 941
SWR A+ ELF+AR EV +S+DL+ CA DP L QLY R+DLW++LPV PS + HLA
Sbjct: 34 SWRDAIRGPELFKARQEVGSSEDLLCVCAFDPENLWQLYDPRKDLWISLPVLPSRIRHLA 93
Query: 940 NLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
+ G VST K + + P+ FA+N+V
Sbjct: 94 HFGAVSTAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130
Score = 66.6 bits (161), Expect(2) = 3e-09
Identities = 35/67 (52%), Positives = 44/67 (65%)
Frame = -2
Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
DAVDPLTGD +GS + WSY ++ Q A R MLV A F CC+ D K VVA G T+
Sbjct: 112 DAVDPLTGDQDGSFATNEVWSYDPIIRQWAPRAPMLVPRAMFACCVLDGKIVVAGGFTSC 171
Query: 705 RKSITRS 685
RKSI+++
Sbjct: 172 RKSISQA 178
Score = 21.9 bits (45), Expect(2) = 3e-09
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 689 DPEKDVWLGSCNT*SSSRNSAYFGLV 612
DPEKD W+ S + NSA G+V
Sbjct: 182 DPEKDAWV-SIPDLHRTHNSACSGVV 206
>ref|XP_002307595.1| f-box family protein [Populus trichocarpa]
gi|118482816|gb|ABK93324.1| unknown [Populus trichocarpa]
gi|222857044|gb|EEE94591.1| f-box family protein [Populus
trichocarpa]
Length = 345
Score = 82.8 bits (203), Expect = 1e-13
Identities = 43/97 (44%), Positives = 60/97 (61%)
Frame = -1
Query: 1120 SWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHLA 941
SWR+ + S ELF+AR EV +++DL+ CA DP L QLY RDLW+ LPV PS++ HLA
Sbjct: 34 SWRAVVRSPELFKARQEVGSAEDLLCVCAFDPENLWQLYDPHRDLWITLPVLPSKIRHLA 93
Query: 940 NLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
+ GVVS+ K + + P+ FA+N+V
Sbjct: 94 HFGVVSSAGKLFVLGGGSDAVDPLTGDQDGSFATNEV 130
Score = 59.7 bits (143), Expect(2) = 2e-07
Identities = 34/67 (50%), Positives = 42/67 (62%)
Frame = -2
Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
DAVDPLTGD +GS + WSY +L Q A R MLV A F C + K VVA G T+
Sbjct: 112 DAVDPLTGDQDGSFATNEVWSYDPVLRQWAARASMLVPRAMFACGTLNGKIVVAGGFTSC 171
Query: 705 RKSITRS 685
RKSI+++
Sbjct: 172 RKSISQA 178
Score = 22.3 bits (46), Expect(2) = 2e-07
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -3
Query: 689 DPEKDVWL 666
DPEKDVW+
Sbjct: 182 DPEKDVWI 189
>ref|XP_003521251.1| PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max]
Length = 345
Score = 82.4 bits (202), Expect = 2e-13
Identities = 42/97 (43%), Positives = 60/97 (61%)
Frame = -1
Query: 1120 SWRSALCSHELFRARFEVEASKDLISACAIDPVILSQLYGSRRDLWMNLPVFPSEVWHLA 941
SW++A+ S ELF+AR EV +++DL+ CA DP L QLY RDLW+ LPV PS++ HL+
Sbjct: 34 SWQAAIRSPELFKARQEVGSTEDLLCVCAFDPENLWQLYDPMRDLWITLPVLPSKIRHLS 93
Query: 940 NLGVVSTQEKCLFVFVEAGCCRPIDRGPQWFFASNKV 830
N G VST K + + P+ FA+++V
Sbjct: 94 NFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEV 130
Score = 60.5 bits (145), Expect(2) = 2e-07
Identities = 32/67 (47%), Positives = 43/67 (64%)
Frame = -2
Query: 885 DAVDPLTGDHNGSSRRTKFWSYGHLLLQCAQRE*MLVRGATFRCCLFD*KGVVACGITTF 706
DAVDPLTGD +G + WSY ++ Q A R MLV + F CC+ + K VVA G T+
Sbjct: 112 DAVDPLTGDQDGCFATDEVWSYDPVVRQWAPRASMLVPRSMFACCVLNGKIVVAGGFTSC 171
Query: 705 RKSITRS 685
RKSI+++
Sbjct: 172 RKSISQA 178
Score = 21.9 bits (45), Expect(2) = 2e-07
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 689 DPEKDVWLGSCNT*SSSRNSAYFGLV 612
DP+KDVW+ + + NSA G+V
Sbjct: 182 DPDKDVWIPMPDL-HRTHNSACSGVV 206