BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021735
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    89   3e-16
ref|XP_003549554.1| PREDICTED: F-box protein CPR30-like [Glycine...    82   3e-14
ref|XP_003529663.1| PREDICTED: F-box protein CPR30-like [Glycine...    82   5e-14
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...    82   5e-14
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ...    82   5e-14

>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 12/145 (8%)
 Frame = -2

Query: 399 NGLVCMTTKDNSFICLWNPSTRKRNIIPS-----KSFHGKPSRSVY--GFCSNASVKDYE 241
           NGL+C++   +  I +WNPSTRK  ++P      K + G  S SVY  GF  ++   DY+
Sbjct: 103 NGLLCISNVVDD-IAVWNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYK 161

Query: 240 VVEISLFLKRG----DSEVTVYSLRRNSWQRIQVFPYAIR-TGRGGVIINGALHWKAHRS 76
           +V I+ F   G    +SEV VYSLR+ SW+RI   PY +   G  GV  NGALHW    +
Sbjct: 162 LVRIAQFGGGGKRSFESEVKVYSLRKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGEN 221

Query: 75  RKNGLLQSFESVIIAYDAGGESFRE 1
            ++ +     ++++A D G E +RE
Sbjct: 222 PESNV----ANIVVALDLGVEDYRE 242


>ref|XP_003549554.1| PREDICTED: F-box protein CPR30-like [Glycine max]
          Length = 382

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
 Frame = -2

Query: 399 NGLVCMTTKDNSFICLWNPSTRKRNIIPSKSFHGKPSRS-----VYGFCSNASVKDYEVV 235
           NGL+C++   +  I LWNP  RK  I+PS  FH +P  S     VYGF  +    DY+++
Sbjct: 94  NGLLCISNVADD-IALWNPFLRKHRILPSDRFH-RPESSLFAARVYGFGHHPPSNDYKLL 151

Query: 234 EISLFL----KRGDSEVTVYSLRRNSWQRIQVFPYAIRTGRG-GVIINGALHWKAHRSRK 70
            I+ F+    +  DS+V +Y+L+ +SW+ +   PYA+   R  GV ++G+LHW   R   
Sbjct: 152 SITYFVDLHKRTFDSQVQLYTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRK-- 209

Query: 69  NGLLQSFESVIIAYDAGGESFRE 1
             L      +I+A+D   E+F E
Sbjct: 210 --LQPDEPDLIVAFDLTSETFCE 230


>ref|XP_003529663.1| PREDICTED: F-box protein CPR30-like [Glycine max]
          Length = 385

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
 Frame = -2

Query: 399 NGLVCMTTKDNSFICLWNPSTRKRNIIPSKSFHGKPSRS-----VYGFCSNASVKDYEVV 235
           NGL+C++   +  I LWNP  RK  I+P+  FH +P  S     VYGF  ++   DY+++
Sbjct: 94  NGLLCISNVADD-IALWNPFLRKHRILPADRFH-RPQSSLFAARVYGFGHHSPSNDYKLL 151

Query: 234 EISLFL----KRGDSEVTVYSLRRNSWQRIQVFPYAIRTGRG-GVIINGALHWKAHRSRK 70
            I+ F+    +  DS+V +Y+L+ +SW+ +   PYA+   R  GV ++G+LHW   R   
Sbjct: 152 SITYFVDLQKRTFDSQVQLYTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRK-- 209

Query: 69  NGLLQSFE-SVIIAYDAGGESFRE 1
              LQ  E  +I+++D   E+F E
Sbjct: 210 ---LQPHEPDLIVSFDLTRETFHE 230


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 16/150 (10%)
 Frame = -2

Query: 402 CNGLVCMTTKDNSFICLWNPSTRKRNIIPSKSFHGKPSRS-----------VYGFCSNAS 256
           CNGL+C+    +  I  WNP+ RK  IIPS+    K +             VYGF  +++
Sbjct: 92  CNGLLCICNIADD-IAFWNPTIRKHRIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSA 150

Query: 255 VKDYEVVEISLFL----KRGDSEVTVYSLRRNSWQRIQVFPYAIRTGRG-GVIINGALHW 91
             DY++V IS F+    +  DS V +Y++R + W+ +   PYA+   R  GV ++GALHW
Sbjct: 151 TDDYKLVSISYFVDLHNRSFDSHVKIYTMRTDVWKTLPSMPYALCCARTMGVFVSGALHW 210

Query: 90  KAHRSRKNGLLQSFESVIIAYDAGGESFRE 1
              R     L      +I+A+D   E FRE
Sbjct: 211 VVTRD----LEPESRDLIVAFDLRFEVFRE 236


>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 389

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 12/144 (8%)
 Frame = -2

Query: 402 CNGLVCMTTKDNSFICLWNPSTRKRNIIPS-----KSFHGKPSR--SVYGFCSNASVKDY 244
           CNGL+C+    +  I LWNPS R   ++P      K + G  S   SV+GF  + S  DY
Sbjct: 95  CNGLLCICNIVDD-IALWNPSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDY 153

Query: 243 EVVEISLF----LKRGDSEVTVYSLRRNSWQRIQVFPYAI-RTGRGGVIINGALHWKAHR 79
           ++V I+ F     K  +SEV V+SLR+NSW+RI   PY +   G  G+  NGALHW   +
Sbjct: 154 KLVRIAQFGGVDRKSFESEVKVFSLRKNSWRRIADMPYCVLYPGENGIYANGALHWLVSQ 213

Query: 78  SRKNGLLQSFESVIIAYDAGGESF 7
              +    +    I+A D G E +
Sbjct: 214 DPDS----TVADTIVALDLGVEDY 233