BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00021680
         (733 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   244   1e-62
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   244   1e-62
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   228   1e-57
ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|2...   221   1e-55
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      213   4e-53

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|296081598|emb|CBI20603.3| unnamed protein product
           [Vitis vinifera]
          Length = 561

 Score =  244 bits (623), Expect = 1e-62
 Identities = 131/245 (53%), Positives = 164/245 (66%), Gaps = 3/245 (1%)
 Frame = +3

Query: 6   LEREIYIQLEKLGALKLFHACLARALAIPTTL---SSHTELTKHSSTEGDVHDHVNITIV 176
           LER+I +QL +LGALKLF  CL+R L   T+    S+ TE  +   T G V DH++  +V
Sbjct: 149 LERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVV 208

Query: 177 XXXXXXXXXXXXXXXXXTVSKTSSLAPMSKSISKPPRRAIGSTVGSSYKSRSRRQKVVRN 356
                                  +    SK+I K P R   STV  +  SR +R    +N
Sbjct: 209 RSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKN 268

Query: 357 EAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAAGVDTKVLQQRLHYGWFCRDKLL 536
           EAEMS+ VK VA+LE+IR  LE E G VAS  +WAEAAGVD KVLQQ+L +GW+CRD+LL
Sbjct: 269 EAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELL 328

Query: 537 RSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYMS 716
           RSTHSLV+Y+ARNYRG+GV+ ED+ QAGN+GVL+GAERFDHT+GY+FSTYVQYWIRK MS
Sbjct: 329 RSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMS 388

Query: 717 GLVTQ 731
            LV +
Sbjct: 389 TLVAR 393


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  244 bits (623), Expect = 1e-62
 Identities = 131/245 (53%), Positives = 164/245 (66%), Gaps = 3/245 (1%)
 Frame = +3

Query: 6   LEREIYIQLEKLGALKLFHACLARALAIPTTL---SSHTELTKHSSTEGDVHDHVNITIV 176
           LER+I +QL +LGALKLF  CL+R L   T+    S+ TE  +   T G V DH++  +V
Sbjct: 199 LERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVV 258

Query: 177 XXXXXXXXXXXXXXXXXTVSKTSSLAPMSKSISKPPRRAIGSTVGSSYKSRSRRQKVVRN 356
                                  +    SK+I K P R   STV  +  SR +R    +N
Sbjct: 259 RSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKN 318

Query: 357 EAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAAGVDTKVLQQRLHYGWFCRDKLL 536
           EAEMS+ VK VA+LE+IR  LE E G VAS  +WAEAAGVD KVLQQ+L +GW+CRD+LL
Sbjct: 319 EAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELL 378

Query: 537 RSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYMS 716
           RSTHSLV+Y+ARNYRG+GV+ ED+ QAGN+GVL+GAERFDHT+GY+FSTYVQYWIRK MS
Sbjct: 379 RSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMS 438

Query: 717 GLVTQ 731
            LV +
Sbjct: 439 TLVAR 443


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 560

 Score =  228 bits (581), Expect = 1e-57
 Identities = 122/246 (49%), Positives = 161/246 (65%), Gaps = 4/246 (1%)
 Frame = +3

Query: 6   LEREIYIQLEKLGALKLFHACLARALAIPTTLSS---HTELTKHSSTEG-DVHDHVNITI 173
           LE +I +QL KLGALKLF+ CL R L     L     HTE+    +  G  +++ + + +
Sbjct: 147 LEEDILLQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSINNQIKVVV 206

Query: 174 VXXXXXXXXXXXXXXXXXTVSKTSSLAPMSKSISKPPRRAIGSTVGSSYKSRSRRQKVVR 353
                                K+ SL   S+ I     +   S+   + KS+SRR  + R
Sbjct: 207 HTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGSEKPTVSSGKKASKSKSRRLIIAR 266

Query: 354 NEAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAAGVDTKVLQQRLHYGWFCRDKL 533
           NEAEM+R +K +ADLEKIRT LE E+ +V S   WAEAAG+D KVLQQ+L +GW+CRD+L
Sbjct: 267 NEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCRDEL 326

Query: 534 LRSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYM 713
           ++ST SLV+Y ARNYRG G++LEDL QAGN+GVL+GAERFDHTRGY+FSTYVQYWIRK M
Sbjct: 327 IKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFSTYVQYWIRKSM 386

Query: 714 SGLVTQ 731
           S +V++
Sbjct: 387 SKIVSR 392


>ref|XP_002308586.1| predicted protein [Populus trichocarpa] gi|222854562|gb|EEE92109.1|
           predicted protein [Populus trichocarpa]
          Length = 559

 Score =  221 bits (563), Expect = 1e-55
 Identities = 123/246 (50%), Positives = 162/246 (65%), Gaps = 6/246 (2%)
 Frame = +3

Query: 6   LEREIYIQLEKLGALKLFHACLARALAIPTTLSSH---TELTKHSSTEGDVHDHVNITIV 176
           LER+I +QL +LGAL+ F+ACL+R L     L      TE T  S T+G + D    T+V
Sbjct: 148 LERDILLQLGRLGALEFFNACLSRTLQTSNVLDLSAVPTENTGESKTDGMLGDLTGKTVV 207

Query: 177 XXXXXXXXXXXXXXXXX-TVSKTSSLAPMSKSISK--PPRRAIGSTVGSSYKSRSRRQKV 347
                                KT+SL+  SK++    P    +  T  SS    SRR  +
Sbjct: 208 RTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTFVKRTSSSS----SRRSLI 263

Query: 348 VRNEAEMSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAAGVDTKVLQQRLHYGWFCRD 527
            RNEA+M+R VK  +DLE+IRT LE E+GQV S   WAEA G+D KVLQQ+L +GW+CRD
Sbjct: 264 ARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWYCRD 323

Query: 528 KLLRSTHSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRK 707
           +L+++THSLV+Y+ARNYRG+G+++EDL QAGN+G+L+GAERFD TRGY+FSTYVQYWIRK
Sbjct: 324 ELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQYWIRK 383

Query: 708 YMSGLV 725
            M  +V
Sbjct: 384 SMLKIV 389


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  213 bits (541), Expect = 4e-53
 Identities = 117/242 (48%), Positives = 155/242 (64%)
 Frame = +3

Query: 6   LEREIYIQLEKLGALKLFHACLARALAIPTTLSSHTELTKHSSTEGDVHDHVNITIVXXX 185
           LE++I +QL +LGAL+LFHACL+R + +       TE  K +  +    D+     +   
Sbjct: 144 LEKDILVQLGRLGALQLFHACLSRIIDMSDLPGLITEDGKANVRK----DNELKKKLVFS 199

Query: 186 XXXXXXXXXXXXXXTVSKTSSLAPMSKSISKPPRRAIGSTVGSSYKSRSRRQKVVRNEAE 365
                           S +   A  S+S  +     + ST     K+R RR  + +NEAE
Sbjct: 200 KRKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARGRRAIIAKNEAE 259

Query: 366 MSRRVKDVADLEKIRTKLEIESGQVASFHSWAEAAGVDTKVLQQRLHYGWFCRDKLLRST 545
           MSR +K VA LEK++  LE E+G+  S + WAEAAG+D KVLQ  LH+GW+CRD+LL+S 
Sbjct: 260 MSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCRDELLKSG 319

Query: 546 HSLVVYLARNYRGLGVSLEDLYQAGNMGVLKGAERFDHTRGYQFSTYVQYWIRKYMSGLV 725
            SLV+YL+R YRGLGV+ EDL QAGN+G+L+GAERFDHTRGYQFSTYVQYWIRK MS LV
Sbjct: 320 RSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFSTYVQYWIRKAMSQLV 379

Query: 726 TQ 731
           ++
Sbjct: 380 SR 381